Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC15.13■□□□□ 0.01
Cdx2P43241 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx2P43241 Gm45606-201ENSMUST00000209836 2795 ntBASIC15.13■□□□□ 0.01
Cdx2P43241 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Cdx2P43241 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Gm36858-201ENSMUST00000194501 2391 ntBASIC15.12■□□□□ 0.01
Cdx2P43241 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Cdx2P43241 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Cdx2P43241 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC15.12■□□□□ 0.01
Cdx2P43241 Gm17968-201ENSMUST00000194902 784 ntBASIC15.12■□□□□ 0.01
Cdx2P43241 Gm9682-201ENSMUST00000197505 556 ntBASIC15.12■□□□□ 0.01
Cdx2P43241 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Cdx2P43241 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC15.12■□□□□ 0.01
Cdx2P43241 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Cdx2P43241 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx2P43241 Gm16401-202ENSMUST00000197463 2074 ntBASIC15.12■□□□□ 0.01
Cdx2P43241 Best4-ps-201ENSMUST00000129783 1380 ntBASIC15.11■□□□□ 0.01
Cdx2P43241 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx2P43241 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx2P43241 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC15.11■□□□□ 0.01
Cdx2P43241 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx2P43241 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx2P43241 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx2P43241 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC15.11■□□□□ 0.01
Cdx2P43241 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx2P43241 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC15.11■□□□□ 0.01
Cdx2P43241 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Cdx2P43241 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx2P43241 Gm8396-201ENSMUST00000057361 823 ntBASIC15.11■□□□□ 0.01
Cdx2P43241 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC15.11■□□□□ 0.01
Cdx2P43241 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx2P43241 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx2P43241 Gm9954-202ENSMUST00000198686 4725 ntBASIC15.11■□□□□ 0.01
Cdx2P43241 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC15.11■□□□□ 0.01
Cdx2P43241 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx2P43241 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
Cdx2P43241 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx2P43241 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Cdx2P43241 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC15.1■□□□□ 0.01
Cdx2P43241 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx2P43241 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx2P43241 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx2P43241 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC15.1■□□□□ 0.01
Cdx2P43241 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx2P43241 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Cdx2P43241 Gm14057-201ENSMUST00000120631 482 ntBASIC15.1■□□□□ 0.01
Cdx2P43241 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx2P43241 AC151836.1-202ENSMUST00000226259 753 ntBASIC15.1■□□□□ 0.01
Cdx2P43241 AC158982.1-201ENSMUST00000228377 901 ntBASIC15.1■□□□□ 0.01
Cdx2P43241 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx2P43241 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Cdx2P43241 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC15.1■□□□□ 0.01
Cdx2P43241 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Cdx2P43241 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
Cdx2P43241 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx2P43241 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx2P43241 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC15.1■□□□□ 0.01
Cdx2P43241 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx2P43241 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx2P43241 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx2P43241 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Cdx2P43241 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx2P43241 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx2P43241 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx2P43241 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx2P43241 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC15.09■□□□□ 0.01
Cdx2P43241 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx2P43241 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC15.09■□□□□ 0.01
Cdx2P43241 Gm13597-201ENSMUST00000121239 375 ntBASIC15.09■□□□□ 0.01
Cdx2P43241 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
Cdx2P43241 Gm18489-201ENSMUST00000172565 551 ntBASIC15.09■□□□□ 0.01
Cdx2P43241 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC15.09■□□□□ 0.01
Cdx2P43241 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx2P43241 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Cdx2P43241 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx2P43241 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx2P43241 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx2P43241 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Cdx2P43241 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx2P43241 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx2P43241 Gm37811-201ENSMUST00000192416 2601 ntBASIC15.09■□□□□ 0.01
Cdx2P43241 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdx2P43241 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms