Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col18a1P39061 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col18a1P39061 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC21.14■□□□□ 0.97
Col18a1P39061 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC21.14■□□□□ 0.97
Col18a1P39061 Gm9824-201ENSMUST00000178707 561 ntBASIC21.14■□□□□ 0.97
Col18a1P39061 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col18a1P39061 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col18a1P39061 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col18a1P39061 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col18a1P39061 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC21.13■□□□□ 0.97
Col18a1P39061 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col18a1P39061 Gm24694-201ENSMUST00000180054 110 ntBASIC21.13■□□□□ 0.97
Col18a1P39061 Gm27663-201ENSMUST00000184839 110 ntBASIC21.13■□□□□ 0.97
Col18a1P39061 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col18a1P39061 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col18a1P39061 AC124732.1-201ENSMUST00000221551 910 ntBASIC21.13■□□□□ 0.97
Col18a1P39061 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col18a1P39061 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.13■□□□□ 0.97
Col18a1P39061 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col18a1P39061 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col18a1P39061 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col18a1P39061 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col18a1P39061 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC21.13■□□□□ 0.97
Col18a1P39061 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC21.13■□□□□ 0.97
Col18a1P39061 AC124751.1-201ENSMUST00000222716 1408 ntBASIC21.13■□□□□ 0.97
Col18a1P39061 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col18a1P39061 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col18a1P39061 Gm5953-201ENSMUST00000220644 2616 ntBASIC21.12■□□□□ 0.97
Col18a1P39061 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col18a1P39061 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col18a1P39061 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col18a1P39061 Syt7-205ENSMUST00000224135 1557 ntBASIC21.12■□□□□ 0.97
Col18a1P39061 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col18a1P39061 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Col18a1P39061 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Col18a1P39061 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
Col18a1P39061 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC21.12■□□□□ 0.97
Col18a1P39061 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC21.12■□□□□ 0.97
Col18a1P39061 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col18a1P39061 Gm18737-201ENSMUST00000173594 937 ntBASIC21.12■□□□□ 0.97
Col18a1P39061 Gm8318-201ENSMUST00000182954 872 ntBASIC21.12■□□□□ 0.97
Col18a1P39061 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col18a1P39061 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col18a1P39061 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col18a1P39061 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col18a1P39061 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col18a1P39061 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col18a1P39061 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col18a1P39061 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC21.11■□□□□ 0.97
Col18a1P39061 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col18a1P39061 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col18a1P39061 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC21.11■□□□□ 0.97
Col18a1P39061 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col18a1P39061 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col18a1P39061 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col18a1P39061 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col18a1P39061 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col18a1P39061 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Col18a1P39061 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col18a1P39061 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC21.1■□□□□ 0.97
Col18a1P39061 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC21.1■□□□□ 0.97
Col18a1P39061 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col18a1P39061 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col18a1P39061 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC21.1■□□□□ 0.97
Col18a1P39061 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col18a1P39061 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Col18a1P39061 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col18a1P39061 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
Col18a1P39061 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC21.1■□□□□ 0.97
Col18a1P39061 Gm14767-201ENSMUST00000121559 586 ntBASIC21.1■□□□□ 0.97
Col18a1P39061 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC21.1■□□□□ 0.97
Col18a1P39061 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col18a1P39061 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC21.1■□□□□ 0.97
Col18a1P39061 AC125350.2-201ENSMUST00000224737 727 ntBASIC21.1■□□□□ 0.97
Col18a1P39061 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC21.1■□□□□ 0.97
Col18a1P39061 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col18a1P39061 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col18a1P39061 Gm43182-201ENSMUST00000199476 2528 ntBASIC21.1■□□□□ 0.97
Col18a1P39061 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col18a1P39061 Gm13517-201ENSMUST00000120782 1495 ntBASIC21.09■□□□□ 0.97
Col18a1P39061 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col18a1P39061 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col18a1P39061 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Col18a1P39061 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC21.09■□□□□ 0.97
Col18a1P39061 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col18a1P39061 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col18a1P39061 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col18a1P39061 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col18a1P39061 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Col18a1P39061 Syt7-204ENSMUST00000223586 1344 ntBASIC21.08■□□□□ 0.97
Col18a1P39061 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col18a1P39061 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col18a1P39061 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col18a1P39061 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Col18a1P39061 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col18a1P39061 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col18a1P39061 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Col18a1P39061 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col18a1P39061 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Col18a1P39061 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms