Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
Hmgb3O54879 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Hmgb3O54879 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.29□□□□□ -0.28
Hmgb3O54879 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Gm42545-201ENSMUST00000202755 922 ntBASIC13.29□□□□□ -0.28
Hmgb3O54879 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Ccdc166-201ENSMUST00000182172 2584 ntBASIC13.29□□□□□ -0.28
Hmgb3O54879 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Hmgb3O54879 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Hmgb3O54879 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Hmgb3O54879 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Hmgb3O54879 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Mir5133-201ENSMUST00000174955 77 ntBASIC13.28□□□□□ -0.28
Hmgb3O54879 Gm10517-202ENSMUST00000192970 758 ntBASIC13.28□□□□□ -0.28
Hmgb3O54879 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC13.28□□□□□ -0.28
Hmgb3O54879 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Hmgb3O54879 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC13.28□□□□□ -0.28
Hmgb3O54879 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Hmgb3O54879 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Hmgb3O54879 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Hmgb3O54879 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Hmgb3O54879 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.28
Hmgb3O54879 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Hmgb3O54879 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Hmgb3O54879 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Hmgb3O54879 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC13.27□□□□□ -0.28
Hmgb3O54879 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC13.27□□□□□ -0.28
Hmgb3O54879 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Hmgb3O54879 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Hmgb3O54879 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Hmgb3O54879 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Hmgb3O54879 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Hmgb3O54879 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Hmgb3O54879 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Hmgb3O54879 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Hmgb3O54879 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Hmgb3O54879 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Hmgb3O54879 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Hmgb3O54879 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Hmgb3O54879 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Hmgb3O54879 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Hmgb3O54879 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC13.27□□□□□ -0.29
Hmgb3O54879 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Hmgb3O54879 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Hmgb3O54879 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Hmgb3O54879 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Hmgb3O54879 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Hmgb3O54879 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Hmgb3O54879 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC13.26□□□□□ -0.29
Hmgb3O54879 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC13.26□□□□□ -0.29
Hmgb3O54879 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC13.26□□□□□ -0.29
Hmgb3O54879 Gm24841-201ENSMUST00000158676 357 ntBASIC13.26□□□□□ -0.29
Hmgb3O54879 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC13.26□□□□□ -0.29
Hmgb3O54879 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC13.26□□□□□ -0.29
Hmgb3O54879 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Hmgb3O54879 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Hmgb3O54879 Gm42569-201ENSMUST00000200539 472 ntBASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms