Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Clk3O35492 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Clk3O35492 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
Clk3O35492 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Clk3O35492 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC15.23■□□□□ 0.03
Clk3O35492 Gm18032-201ENSMUST00000222541 538 ntBASIC15.23■□□□□ 0.03
Clk3O35492 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Clk3O35492 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Clk3O35492 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Clk3O35492 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Clk3O35492 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC15.23■□□□□ 0.03
Clk3O35492 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Clk3O35492 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Clk3O35492 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC15.22■□□□□ 0.03
Clk3O35492 Gm45203-201ENSMUST00000206384 1831 ntBASIC15.22■□□□□ 0.03
Clk3O35492 Wnt10b-204ENSMUST00000226655 1807 ntBASIC15.22■□□□□ 0.03
Clk3O35492 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
Clk3O35492 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Clk3O35492 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
Clk3O35492 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
Clk3O35492 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Clk3O35492 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Clk3O35492 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Clk3O35492 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC15.21■□□□□ 0.03
Clk3O35492 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC15.21■□□□□ 0.03
Clk3O35492 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC15.21■□□□□ 0.03
Clk3O35492 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Gm11355-201ENSMUST00000121120 306 ntBASIC15.21■□□□□ 0.03
Clk3O35492 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC15.21■□□□□ 0.03
Clk3O35492 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Clk3O35492 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Clk3O35492 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Clk3O35492 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Clk3O35492 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Clk3O35492 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Clk3O35492 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clk3O35492 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Clk3O35492 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Clk3O35492 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Clk3O35492 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clk3O35492 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clk3O35492 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Clk3O35492 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clk3O35492 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC15.2■□□□□ 0.02
Clk3O35492 Ccdc166-201ENSMUST00000182172 2584 ntBASIC15.2■□□□□ 0.02
Clk3O35492 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clk3O35492 Gm11336-201ENSMUST00000118168 334 ntBASIC15.2■□□□□ 0.02
Clk3O35492 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 9.9 ms