Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MTND4LP19-201ENST00000403051 166 ntBASIC1.04□□□□□ -2.24
USP3Q9Y6I4 RNU6-92P-201ENST00000605893 104 ntBASIC1.04□□□□□ -2.24
USP3Q9Y6I4 SNORD114-27-201ENST00000363766 70 ntBASIC1.03□□□□□ -2.24
USP3Q9Y6I4 SNORA2A-201ENST00000383885 135 ntBASIC1.03□□□□□ -2.24
USP3Q9Y6I4 MIR517B-201ENST00000385102 67 ntBASIC1.03□□□□□ -2.24
USP3Q9Y6I4 SNORD113-2-201ENST00000391082 72 ntBASIC1.03□□□□□ -2.24
USP3Q9Y6I4 HMGN2P22-201ENST00000427588 175 ntBASIC1.03□□□□□ -2.24
USP3Q9Y6I4 RNU6-698P-201ENST00000363523 107 ntBASIC1.02□□□□□ -2.25
USP3Q9Y6I4 RNU6-34P-201ENST00000364874 107 ntBASIC1.02□□□□□ -2.25
USP3Q9Y6I4 SNORA33.1-201ENST00000364957 130 ntBASIC1.02□□□□□ -2.25
USP3Q9Y6I4 MIR548C-201ENST00000384815 97 ntBASIC1.02□□□□□ -2.25
USP3Q9Y6I4 RNU1-29P-201ENST00000606574 126 ntBASIC1.02□□□□□ -2.25
USP3Q9Y6I4 AC103810.9-201ENST00000606688 112 ntBASIC1.02□□□□□ -2.25
USP3Q9Y6I4 MIR6734-201ENST00000621166 68 ntBASIC1.02□□□□□ -2.25
USP3Q9Y6I4 SNORD114-29-201ENST00000364819 70 ntBASIC1.01□□□□□ -2.25
USP3Q9Y6I4 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
USP3Q9Y6I4 RNU6-122P-201ENST00000516818 107 ntBASIC1.01□□□□□ -2.25
USP3Q9Y6I4 MIR4752-201ENST00000579672 72 ntBASIC1.01□□□□□ -2.25
USP3Q9Y6I4 MIR4452-201ENST00000583004 71 ntBASIC1.01□□□□□ -2.25
USP3Q9Y6I4 U2.7-201ENST00000619197 100 ntBASIC1.01□□□□□ -2.25
USP3Q9Y6I4 MIR373-201ENST00000362273 69 ntBASIC1□□□□□ -2.25
USP3Q9Y6I4 RNA5SP192-201ENST00000364404 120 ntBASIC1□□□□□ -2.25
USP3Q9Y6I4 MIR582-201ENST00000365731 98 ntBASIC1□□□□□ -2.25
USP3Q9Y6I4 MIR532-201ENST00000385025 91 ntBASIC1□□□□□ -2.25
USP3Q9Y6I4 AC069271.1-201ENST00000445577 156 ntBASIC1□□□□□ -2.25
USP3Q9Y6I4 SNORD114-22-201ENST00000365423 72 ntBASIC0.99□□□□□ -2.25
USP3Q9Y6I4 RNY1P8-201ENST00000383970 114 ntBASIC0.99□□□□□ -2.25
USP3Q9Y6I4 AC079150.2-201ENST00000443733 78 ntBASIC0.99□□□□□ -2.25
USP3Q9Y6I4 RNU6-863P-201ENST00000515989 104 ntBASIC0.99□□□□□ -2.25
USP3Q9Y6I4 ACA64.5-201ENST00000516207 127 ntBASIC0.99□□□□□ -2.25
USP3Q9Y6I4 RNU7-174P-201ENST00000516248 59 ntBASIC0.99□□□□□ -2.25
USP3Q9Y6I4 MIR548V-201ENST00000584165 80 ntBASIC0.99□□□□□ -2.25
USP3Q9Y6I4 SNORA25.18-201ENST00000607153 114 ntBASIC0.99□□□□□ -2.25
USP3Q9Y6I4 RNU6-987P-201ENST00000384759 104 ntBASIC0.98□□□□□ -2.25
USP3Q9Y6I4 MIR518A1-201ENST00000385068 85 ntBASIC0.98□□□□□ -2.25
USP3Q9Y6I4 RNU6-229P-201ENST00000516614 102 ntBASIC0.98□□□□□ -2.25
USP3Q9Y6I4 MIR466-201ENST00000580653 84 ntBASIC0.98□□□□□ -2.25
USP3Q9Y6I4 AC211469.2-201ENST00000605461 205 ntBASIC0.98□□□□□ -2.25
USP3Q9Y6I4 MIR6857-201ENST00000613267 93 ntBASIC0.98□□□□□ -2.25
USP3Q9Y6I4 U6.96-201ENST00000636425 70 ntBASIC0.97□□□□□ -2.25
USP3Q9Y6I4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.97□□□□□ -2.25
USP3Q9Y6I4 MIR3973-201ENST00000579824 107 ntBASIC0.96□□□□□ -2.26
USP3Q9Y6I4 MIR489-201ENST00000384923 84 ntBASIC0.95□□□□□ -2.26
USP3Q9Y6I4 AL021921.1-201ENST00000442774 93 ntBASIC0.95□□□□□ -2.26
USP3Q9Y6I4 MIR516B1-201ENST00000385211 90 ntBASIC0.94□□□□□ -2.26
USP3Q9Y6I4 RNU4-37P-201ENST00000410214 84 ntBASIC0.94□□□□□ -2.26
USP3Q9Y6I4 AC243829.6-201ENST00000612652 106 ntBASIC0.94□□□□□ -2.26
USP3Q9Y6I4 MIR633-201ENST00000384821 98 ntBASIC0.93□□□□□ -2.26
USP3Q9Y6I4 MIR520E-201ENST00000384867 87 ntBASIC0.93□□□□□ -2.26
USP3Q9Y6I4 MIR630-201ENST00000384957 97 ntBASIC0.93□□□□□ -2.26
USP3Q9Y6I4 AC098934.3-201ENST00000430450 190 ntBASIC0.92□□□□□ -2.26
USP3Q9Y6I4 CYP3A54P-201ENST00000566950 75 ntBASIC0.91□□□□□ -2.26
USP3Q9Y6I4 MIR3938-201ENST00000582157 103 ntBASIC0.91□□□□□ -2.26
USP3Q9Y6I4 SNORD60.1-201ENST00000362451 73 ntBASIC0.9□□□□□ -2.27
USP3Q9Y6I4 Y_RNA.423-201ENST00000384057 113 ntBASIC0.9□□□□□ -2.27
USP3Q9Y6I4 RNU6-614P-201ENST00000384369 107 ntBASIC0.9□□□□□ -2.27
USP3Q9Y6I4 PSMC1P5-201ENST00000512850 177 ntBASIC0.9□□□□□ -2.27
USP3Q9Y6I4 MIR4677-201ENST00000584153 80 ntBASIC0.9□□□□□ -2.27
USP3Q9Y6I4 U6.59-201ENST00000615686 107 ntBASIC0.9□□□□□ -2.27
USP3Q9Y6I4 MIR4698-201ENST00000577795 80 ntBASIC0.89□□□□□ -2.27
USP3Q9Y6I4 MIR548AD-201ENST00000584780 82 ntBASIC0.89□□□□□ -2.27
USP3Q9Y6I4 AC243829.3-201ENST00000622177 108 ntBASIC0.89□□□□□ -2.27
USP3Q9Y6I4 RNU6-1079P-201ENST00000362861 110 ntBASIC0.88□□□□□ -2.27
USP3Q9Y6I4 Y_RNA.246-201ENST00000364495 108 ntBASIC0.88□□□□□ -2.27
USP3Q9Y6I4 U4.4-201ENST00000620626 117 ntBASIC0.88□□□□□ -2.27
USP3Q9Y6I4 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.87□□□□□ -2.27
USP3Q9Y6I4 RNU6-351P-201ENST00000516097 100 ntBASIC0.87□□□□□ -2.27
USP3Q9Y6I4 RNU7-188P-201ENST00000517063 64 ntBASIC0.87□□□□□ -2.27
USP3Q9Y6I4 MIR4653-201ENST00000585107 83 ntBASIC0.87□□□□□ -2.27
USP3Q9Y6I4 MIR501-201ENST00000390204 84 ntBASIC0.86□□□□□ -2.27
USP3Q9Y6I4 MIR760-201ENST00000390220 80 ntBASIC0.86□□□□□ -2.27
USP3Q9Y6I4 RPS29P1-201ENST00000465274 159 ntBASIC0.86□□□□□ -2.27
USP3Q9Y6I4 RNU6-1223P-201ENST00000517124 104 ntBASIC0.86□□□□□ -2.27
USP3Q9Y6I4 AC084368.1-201ENST00000620935 65 ntBASIC0.86□□□□□ -2.27
USP3Q9Y6I4 RNU6-829P-201ENST00000363700 112 ntBASIC0.85□□□□□ -2.27
USP3Q9Y6I4 RNA5SP128-201ENST00000365305 116 ntBASIC0.85□□□□□ -2.27
USP3Q9Y6I4 RPL39P28-201ENST00000465655 155 ntBASIC0.85□□□□□ -2.27
USP3Q9Y6I4 RNA5SP470-201ENST00000516463 106 ntBASIC0.85□□□□□ -2.27
USP3Q9Y6I4 MIR6515-201ENST00000619843 57 ntBASIC0.85□□□□□ -2.27
USP3Q9Y6I4 MIR6755-201ENST00000619993 66 ntBASIC0.85□□□□□ -2.27
USP3Q9Y6I4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.85□□□□□ -2.27
USP3Q9Y6I4 SNORD114-2-201ENST00000363953 78 ntBASIC0.84□□□□□ -2.27
USP3Q9Y6I4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.84□□□□□ -2.27
USP3Q9Y6I4 RNA5SP480-201ENST00000516840 109 ntBASIC0.84□□□□□ -2.27
USP3Q9Y6I4 MIR151B-201ENST00000584249 96 ntBASIC0.84□□□□□ -2.27
USP3Q9Y6I4 SNORA75.1-201ENST00000391130 148 ntBASIC0.83□□□□□ -2.28
USP3Q9Y6I4 RNU6-518P-201ENST00000516056 96 ntBASIC0.83□□□□□ -2.28
USP3Q9Y6I4 RNU7-154P-201ENST00000516194 62 ntBASIC0.83□□□□□ -2.28
USP3Q9Y6I4 RNU4-54P-201ENST00000516428 129 ntBASIC0.83□□□□□ -2.28
USP3Q9Y6I4 MIR6788-201ENST00000618842 66 ntBASIC0.83□□□□□ -2.28
USP3Q9Y6I4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
USP3Q9Y6I4 SNORD114-26-201ENST00000363543 72 ntBASIC0.82□□□□□ -2.28
USP3Q9Y6I4 MIR598-201ENST00000384868 97 ntBASIC0.82□□□□□ -2.28
USP3Q9Y6I4 MIR876-201ENST00000401147 81 ntBASIC0.82□□□□□ -2.28
USP3Q9Y6I4 CYP3A137P-201ENST00000562436 69 ntBASIC0.82□□□□□ -2.28
USP3Q9Y6I4 MIR6773-201ENST00000612812 74 ntBASIC0.82□□□□□ -2.28
USP3Q9Y6I4 MIR548J-201ENST00000408833 112 ntBASIC0.81□□□□□ -2.28
USP3Q9Y6I4 RNU6-141P-201ENST00000410499 105 ntBASIC0.81□□□□□ -2.28
USP3Q9Y6I4 Y_RNA.74-201ENST00000362911 99 ntBASIC0.8□□□□□ -2.28
USP3Q9Y6I4 Y_RNA.236-201ENST00000364427 111 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 216.4 ms