Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.82□□□□□ -2.28
CCDC87Q9NVE4 uc_338.10-201ENST00000621872 182 ntBASIC0.82□□□□□ -2.28
CCDC87Q9NVE4 MIR664A-201ENST00000626086 82 ntBASIC0.82□□□□□ -2.28
CCDC87Q9NVE4 SNORD45.1-201ENST00000363181 77 ntBASIC0.81□□□□□ -2.28
CCDC87Q9NVE4 RNU6-229P-201ENST00000516614 102 ntBASIC0.81□□□□□ -2.28
CCDC87Q9NVE4 RNA5SP62-201ENST00000363457 110 ntBASIC0.8□□□□□ -2.28
CCDC87Q9NVE4 RNA5SP499-201ENST00000363982 119 ntBASIC0.8□□□□□ -2.28
CCDC87Q9NVE4 RNU6-945P-201ENST00000383947 107 ntBASIC0.8□□□□□ -2.28
CCDC87Q9NVE4 RNU6-634P-201ENST00000459134 106 ntBASIC0.8□□□□□ -2.28
CCDC87Q9NVE4 SCARNA17.3-201ENST00000516381 125 ntBASIC0.8□□□□□ -2.28
CCDC87Q9NVE4 SNORA2.1-201ENST00000363089 137 ntBASIC0.79□□□□□ -2.28
CCDC87Q9NVE4 Y_RNA.125-201ENST00000363371 111 ntBASIC0.79□□□□□ -2.28
CCDC87Q9NVE4 MIR4473-201ENST00000583731 91 ntBASIC0.79□□□□□ -2.28
CCDC87Q9NVE4 MIR3657-201ENST00000584818 117 ntBASIC0.79□□□□□ -2.28
CCDC87Q9NVE4 Y_RNA.250-201ENST00000364542 110 ntBASIC0.78□□□□□ -2.28
CCDC87Q9NVE4 RNU4-54P-201ENST00000516428 129 ntBASIC0.78□□□□□ -2.28
CCDC87Q9NVE4 MIR5087-201ENST00000635826 76 ntBASIC0.78□□□□□ -2.28
CCDC87Q9NVE4 Y_RNA.423-201ENST00000384057 113 ntBASIC0.77□□□□□ -2.29
CCDC87Q9NVE4 HMGN2P22-201ENST00000427588 175 ntBASIC0.77□□□□□ -2.29
CCDC87Q9NVE4 MIR652-201ENST00000385278 98 ntBASIC0.76□□□□□ -2.29
CCDC87Q9NVE4 MIR203A-201ENST00000384836 110 ntBASIC0.75□□□□□ -2.29
CCDC87Q9NVE4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.74□□□□□ -2.29
CCDC87Q9NVE4 MIR548AE1-201ENST00000583292 70 ntBASIC0.74□□□□□ -2.29
CCDC87Q9NVE4 MIR6755-201ENST00000619993 66 ntBASIC0.74□□□□□ -2.29
CCDC87Q9NVE4 SNORD44.1-201ENST00000363202 61 ntBASIC0.73□□□□□ -2.29
CCDC87Q9NVE4 RNU6-604P-201ENST00000390917 100 ntBASIC0.73□□□□□ -2.29
CCDC87Q9NVE4 SNORD115-22-201ENST00000364456 82 ntBASIC0.72□□□□□ -2.29
CCDC87Q9NVE4 RNU6-895P-201ENST00000384125 103 ntBASIC0.72□□□□□ -2.29
CCDC87Q9NVE4 MIR20A-201ENST00000362279 71 ntBASIC0.71□□□□□ -2.3
CCDC87Q9NVE4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.71□□□□□ -2.3
CCDC87Q9NVE4 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.7□□□□□ -2.3
CCDC87Q9NVE4 RNU6-990P-201ENST00000364385 104 ntBASIC0.7□□□□□ -2.3
CCDC87Q9NVE4 MIR760-201ENST00000390220 80 ntBASIC0.7□□□□□ -2.3
CCDC87Q9NVE4 AC244090.1-201ENST00000441884 93 ntBASIC0.7□□□□□ -2.3
CCDC87Q9NVE4 MIR2909-201ENST00000617113 69 ntBASIC0.7□□□□□ -2.3
CCDC87Q9NVE4 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
CCDC87Q9NVE4 SNORD114-29-201ENST00000364819 70 ntBASIC0.69□□□□□ -2.3
CCDC87Q9NVE4 RNA5SP128-201ENST00000365305 116 ntBASIC0.69□□□□□ -2.3
CCDC87Q9NVE4 SNORD2-201ENST00000459163 69 ntBASIC0.69□□□□□ -2.3
CCDC87Q9NVE4 RNU6-881P-201ENST00000516813 102 ntBASIC0.69□□□□□ -2.3
CCDC87Q9NVE4 MIR548AD-201ENST00000584780 82 ntBASIC0.69□□□□□ -2.3
CCDC87Q9NVE4 AC243829.6-201ENST00000612652 106 ntBASIC0.69□□□□□ -2.3
CCDC87Q9NVE4 SNORD113.1-201ENST00000363280 73 ntBASIC0.68□□□□□ -2.3
CCDC87Q9NVE4 AC114801.3-201ENST00000510231 177 ntBASIC0.68□□□□□ -2.3
CCDC87Q9NVE4 MIR4677-201ENST00000584153 80 ntBASIC0.68□□□□□ -2.3
CCDC87Q9NVE4 MIR6739-201ENST00000622461 75 ntBASIC0.68□□□□□ -2.3
CCDC87Q9NVE4 SNORD115-31-201ENST00000365318 82 ntBASIC0.67□□□□□ -2.3
CCDC87Q9NVE4 SNORD45A-201ENST00000384512 84 ntBASIC0.67□□□□□ -2.3
CCDC87Q9NVE4 SNORA63.6-201ENST00000364921 119 ntBASIC0.66□□□□□ -2.3
CCDC87Q9NVE4 VTRNA1-3-201ENST00000365645 89 ntBASIC0.66□□□□□ -2.3
CCDC87Q9NVE4 SNORA15B-2-201ENST00000384058 135 ntBASIC0.66□□□□□ -2.3
CCDC87Q9NVE4 SNORA15B-1-201ENST00000384334 135 ntBASIC0.66□□□□□ -2.3
CCDC87Q9NVE4 MIR516B1-201ENST00000385211 90 ntBASIC0.66□□□□□ -2.3
CCDC87Q9NVE4 MIR501-201ENST00000390204 84 ntBASIC0.66□□□□□ -2.3
CCDC87Q9NVE4 MTND4LP1-201ENST00000446263 157 ntBASIC0.66□□□□□ -2.3
CCDC87Q9NVE4 RNA5SP476-201ENST00000516613 103 ntBASIC0.66□□□□□ -2.3
CCDC87Q9NVE4 SNORA40.17-201ENST00000517256 115 ntBASIC0.66□□□□□ -2.3
CCDC87Q9NVE4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.66□□□□□ -2.3
CCDC87Q9NVE4 RNU6-1216P-201ENST00000362590 107 ntBASIC0.65□□□□□ -2.31
CCDC87Q9NVE4 RNU6-1162P-201ENST00000384443 104 ntBASIC0.65□□□□□ -2.31
CCDC87Q9NVE4 RNU6-649P-201ENST00000384463 107 ntBASIC0.65□□□□□ -2.31
CCDC87Q9NVE4 RNU6-540P-201ENST00000384622 101 ntBASIC0.65□□□□□ -2.31
CCDC87Q9NVE4 MIR92A1-201ENST00000385233 78 ntBASIC0.65□□□□□ -2.31
CCDC87Q9NVE4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.65□□□□□ -2.31
CCDC87Q9NVE4 SNORA68.3-201ENST00000515906 83 ntBASIC0.65□□□□□ -2.31
CCDC87Q9NVE4 RNU6-1232P-201ENST00000516299 86 ntBASIC0.65□□□□□ -2.31
CCDC87Q9NVE4 MIRLET7D-201ENST00000362263 87 ntBASIC0.64□□□□□ -2.31
CCDC87Q9NVE4 AC114737.2-201ENST00000421583 173 ntBASIC0.64□□□□□ -2.31
CCDC87Q9NVE4 AC021146.9-201ENST00000512503 156 ntBASIC0.64□□□□□ -2.31
CCDC87Q9NVE4 RNU6-539P-201ENST00000516665 103 ntBASIC0.64□□□□□ -2.31
CCDC87Q9NVE4 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.64□□□□□ -2.31
CCDC87Q9NVE4 AC090625.1-201ENST00000357130 210 ntBASIC0.63□□□□□ -2.31
CCDC87Q9NVE4 RNU6-663P-201ENST00000391105 106 ntBASIC0.63□□□□□ -2.31
CCDC87Q9NVE4 SNORD30.1-201ENST00000391309 70 ntBASIC0.63□□□□□ -2.31
CCDC87Q9NVE4 MIR548E-201ENST00000408287 88 ntBASIC0.63□□□□□ -2.31
CCDC87Q9NVE4 RNA5SP147-201ENST00000516493 109 ntBASIC0.63□□□□□ -2.31
CCDC87Q9NVE4 SNORA62.5-201ENST00000516634 120 ntBASIC0.63□□□□□ -2.31
CCDC87Q9NVE4 AC084368.1-201ENST00000620935 65 ntBASIC0.63□□□□□ -2.31
CCDC87Q9NVE4 SNORA9.1-201ENST00000362412 131 ntBASIC0.62□□□□□ -2.31
CCDC87Q9NVE4 Y_RNA.633-201ENST00000459107 95 ntBASIC0.62□□□□□ -2.31
CCDC87Q9NVE4 MIR521-2-201ENST00000384818 87 ntBASIC0.61□□□□□ -2.31
CCDC87Q9NVE4 RNU6-645P-201ENST00000364649 106 ntBASIC0.6□□□□□ -2.31
CCDC87Q9NVE4 MIR4514-201ENST00000581410 57 ntBASIC0.6□□□□□ -2.31
CCDC87Q9NVE4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.59□□□□□ -2.31
CCDC87Q9NVE4 MIR582-201ENST00000365731 98 ntBASIC0.59□□□□□ -2.31
CCDC87Q9NVE4 RNU7-129P-201ENST00000516128 62 ntBASIC0.59□□□□□ -2.31
CCDC87Q9NVE4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
CCDC87Q9NVE4 MIR103A1-201ENST00000362165 78 ntBASIC0.58□□□□□ -2.32
CCDC87Q9NVE4 RNU6-35P-201ENST00000384530 107 ntBASIC0.58□□□□□ -2.32
CCDC87Q9NVE4 RNU7-188P-201ENST00000517063 64 ntBASIC0.58□□□□□ -2.32
CCDC87Q9NVE4 uc_338.17-201ENST00000619633 179 ntBASIC0.58□□□□□ -2.32
CCDC87Q9NVE4 RNU6-668P-201ENST00000364180 107 ntBASIC0.57□□□□□ -2.32
CCDC87Q9NVE4 SNORA75.1-201ENST00000391130 148 ntBASIC0.57□□□□□ -2.32
CCDC87Q9NVE4 RNA5SP63-201ENST00000391225 112 ntBASIC0.57□□□□□ -2.32
CCDC87Q9NVE4 AC139453.2-201ENST00000487255 133 ntBASIC0.57□□□□□ -2.32
CCDC87Q9NVE4 RNU6-982P-201ENST00000516216 102 ntBASIC0.57□□□□□ -2.32
CCDC87Q9NVE4 U6.111-201ENST00000636093 83 ntBASIC0.57□□□□□ -2.32
CCDC87Q9NVE4 MIR499B-201ENST00000636498 73 ntBASIC0.57□□□□□ -2.32
CCDC87Q9NVE4 MIR876-201ENST00000401147 81 ntBASIC0.56□□□□□ -2.32
CCDC87Q9NVE4 snoU13.13-201ENST00000458842 104 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 193.2 ms