Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC074348.1-201ENST00000426503 132 ntBASIC0.31□□□□□ -2.36
PCIF1Q9H4Z3 AL691482.2-201ENST00000457453 84 ntBASIC0.31□□□□□ -2.36
PCIF1Q9H4Z3 SNORA62.5-201ENST00000516634 120 ntBASIC0.31□□□□□ -2.36
PCIF1Q9H4Z3 RNU6-782P-201ENST00000516852 104 ntBASIC0.31□□□□□ -2.36
PCIF1Q9H4Z3 MIR4484-201ENST00000582855 83 ntBASIC0.31□□□□□ -2.36
PCIF1Q9H4Z3 RNU6-1094P-201ENST00000362416 104 ntBASIC0.3□□□□□ -2.36
PCIF1Q9H4Z3 MIR582-201ENST00000365731 98 ntBASIC0.3□□□□□ -2.36
PCIF1Q9H4Z3 RNU6-380P-201ENST00000410207 107 ntBASIC0.3□□□□□ -2.36
PCIF1Q9H4Z3 RNA5SP225-201ENST00000410874 135 ntBASIC0.3□□□□□ -2.36
PCIF1Q9H4Z3 RNU6-752P-201ENST00000516376 102 ntBASIC0.3□□□□□ -2.36
PCIF1Q9H4Z3 MIR6509-201ENST00000614603 85 ntBASIC0.3□□□□□ -2.36
PCIF1Q9H4Z3 AL109933.3-201ENST00000619095 188 ntBASIC0.3□□□□□ -2.36
PCIF1Q9H4Z3 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.3□□□□□ -2.36
PCIF1Q9H4Z3 MIR4315-1-201ENST00000636800 73 ntBASIC0.3□□□□□ -2.36
PCIF1Q9H4Z3 MIR4315-2-201ENST00000640925 73 ntBASIC0.3□□□□□ -2.36
PCIF1Q9H4Z3 MIR876-201ENST00000401147 81 ntBASIC0.29□□□□□ -2.36
PCIF1Q9H4Z3 RNU6-330P-201ENST00000363015 107 ntBASIC0.28□□□□□ -2.36
PCIF1Q9H4Z3 SNORD114-29-201ENST00000364819 70 ntBASIC0.28□□□□□ -2.36
PCIF1Q9H4Z3 MIR203A-201ENST00000384836 110 ntBASIC0.28□□□□□ -2.36
PCIF1Q9H4Z3 MIR548E-201ENST00000408287 88 ntBASIC0.28□□□□□ -2.36
PCIF1Q9H4Z3 SCARNA11.2-201ENST00000517183 154 ntBASIC0.28□□□□□ -2.36
PCIF1Q9H4Z3 SNORA40.17-201ENST00000517256 115 ntBASIC0.28□□□□□ -2.36
PCIF1Q9H4Z3 SNORA75.1-201ENST00000391130 148 ntBASIC0.27□□□□□ -2.37
PCIF1Q9H4Z3 RNU6-279P-201ENST00000391297 101 ntBASIC0.27□□□□□ -2.37
PCIF1Q9H4Z3 RNU6-807P-201ENST00000516805 107 ntBASIC0.27□□□□□ -2.37
PCIF1Q9H4Z3 AC023932.2-201ENST00000603176 175 ntBASIC0.27□□□□□ -2.37
PCIF1Q9H4Z3 MIR1297-201ENST00000637311 77 ntBASIC0.27□□□□□ -2.37
PCIF1Q9H4Z3 MIR20A-201ENST00000362279 71 ntBASIC0.26□□□□□ -2.37
PCIF1Q9H4Z3 Y_RNA.30-201ENST00000362572 97 ntBASIC0.26□□□□□ -2.37
PCIF1Q9H4Z3 SNORA8.1-201ENST00000384250 140 ntBASIC0.26□□□□□ -2.37
PCIF1Q9H4Z3 MIR1197-201ENST00000408818 88 ntBASIC0.26□□□□□ -2.37
PCIF1Q9H4Z3 MIR548H2-201ENST00000408874 88 ntBASIC0.26□□□□□ -2.37
PCIF1Q9H4Z3 SCARNA18B-201ENST00000458806 135 ntBASIC0.26□□□□□ -2.37
PCIF1Q9H4Z3 RNU6-175P-201ENST00000516896 107 ntBASIC0.26□□□□□ -2.37
PCIF1Q9H4Z3 RN7SL660P-201ENST00000614852 299 ntBASIC0.26□□□□□ -2.37
PCIF1Q9H4Z3 AC244090.1-201ENST00000441884 93 ntBASIC0.25□□□□□ -2.37
PCIF1Q9H4Z3 RNU6-857P-201ENST00000515893 110 ntBASIC0.25□□□□□ -2.37
PCIF1Q9H4Z3 RNA5SP395-201ENST00000516567 118 ntBASIC0.25□□□□□ -2.37
PCIF1Q9H4Z3 MIR4514-201ENST00000581410 57 ntBASIC0.25□□□□□ -2.37
PCIF1Q9H4Z3 MIR3657-201ENST00000584818 117 ntBASIC0.25□□□□□ -2.37
PCIF1Q9H4Z3 Y_RNA.374-201ENST00000365606 101 ntBASIC0.24□□□□□ -2.37
PCIF1Q9H4Z3 RNU6-260P-201ENST00000384092 107 ntBASIC0.24□□□□□ -2.37
PCIF1Q9H4Z3 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
PCIF1Q9H4Z3 SNORA42.1-201ENST00000363515 137 ntBASIC0.23□□□□□ -2.37
PCIF1Q9H4Z3 AC104408.1-201ENST00000605241 170 ntBASIC0.23□□□□□ -2.37
PCIF1Q9H4Z3 Y_RNA.788-201ENST00000622394 112 ntBASIC0.23□□□□□ -2.37
PCIF1Q9H4Z3 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.23□□□□□ -2.37
PCIF1Q9H4Z3 RNA5SP257-201ENST00000363023 116 ntBASIC0.22□□□□□ -2.37
PCIF1Q9H4Z3 RNU6-1275P-201ENST00000391087 107 ntBASIC0.22□□□□□ -2.37
PCIF1Q9H4Z3 RNA5SP63-201ENST00000391225 112 ntBASIC0.22□□□□□ -2.37
PCIF1Q9H4Z3 SNORA63.6-201ENST00000364921 119 ntBASIC0.21□□□□□ -2.38
PCIF1Q9H4Z3 RNA5SP147-201ENST00000516493 109 ntBASIC0.21□□□□□ -2.38
PCIF1Q9H4Z3 Y_RNA.685-201ENST00000516532 108 ntBASIC0.21□□□□□ -2.38
PCIF1Q9H4Z3 MIR3675-201ENST00000583661 73 ntBASIC0.21□□□□□ -2.38
PCIF1Q9H4Z3 SNORA2.1-201ENST00000363089 137 ntBASIC0.2□□□□□ -2.38
PCIF1Q9H4Z3 AC021146.9-201ENST00000512503 156 ntBASIC0.2□□□□□ -2.38
PCIF1Q9H4Z3 MIR2909-201ENST00000617113 69 ntBASIC0.2□□□□□ -2.38
PCIF1Q9H4Z3 RNA5SP214-201ENST00000363378 118 ntBASIC0.19□□□□□ -2.38
PCIF1Q9H4Z3 MIR610-201ENST00000385139 96 ntBASIC0.19□□□□□ -2.38
PCIF1Q9H4Z3 SNORA49-201ENST00000386157 136 ntBASIC0.19□□□□□ -2.38
PCIF1Q9H4Z3 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.19□□□□□ -2.38
PCIF1Q9H4Z3 snoU13.13-201ENST00000458842 104 ntBASIC0.19□□□□□ -2.38
PCIF1Q9H4Z3 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.19□□□□□ -2.38
PCIF1Q9H4Z3 RNU6-24P-201ENST00000384440 107 ntBASIC0.18□□□□□ -2.38
PCIF1Q9H4Z3 MIR593-201ENST00000384856 100 ntBASIC0.18□□□□□ -2.38
PCIF1Q9H4Z3 MIR6514-201ENST00000622549 70 ntBASIC0.18□□□□□ -2.38
PCIF1Q9H4Z3 MIR664A-201ENST00000626086 82 ntBASIC0.18□□□□□ -2.38
PCIF1Q9H4Z3 RNU6-1036P-201ENST00000383959 104 ntBASIC0.17□□□□□ -2.38
PCIF1Q9H4Z3 SNORD114-9-201ENST00000364370 72 ntBASIC0.16□□□□□ -2.38
PCIF1Q9H4Z3 MIR892B-201ENST00000401279 77 ntBASIC0.16□□□□□ -2.38
PCIF1Q9H4Z3 RNA5SP163-201ENST00000410304 99 ntBASIC0.16□□□□□ -2.38
PCIF1Q9H4Z3 MIR6718-201ENST00000616153 80 ntBASIC0.16□□□□□ -2.38
PCIF1Q9H4Z3 SNORD114-5-201ENST00000362928 70 ntBASIC0.15□□□□□ -2.39
PCIF1Q9H4Z3 MIR106A-201ENST00000384870 81 ntBASIC0.15□□□□□ -2.39
PCIF1Q9H4Z3 MIR145-201ENST00000384967 88 ntBASIC0.15□□□□□ -2.39
PCIF1Q9H4Z3 Y_RNA.681-201ENST00000516445 113 ntBASIC0.15□□□□□ -2.39
PCIF1Q9H4Z3 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.15□□□□□ -2.39
PCIF1Q9H4Z3 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.14□□□□□ -2.39
PCIF1Q9H4Z3 RNU6-604P-201ENST00000390917 100 ntBASIC0.14□□□□□ -2.39
PCIF1Q9H4Z3 MIR3134-201ENST00000579433 74 ntBASIC0.14□□□□□ -2.39
PCIF1Q9H4Z3 MIR4743-201ENST00000584576 69 ntBASIC0.14□□□□□ -2.39
PCIF1Q9H4Z3 AC145423.2-201ENST00000610631 239 ntBASIC0.14□□□□□ -2.39
PCIF1Q9H4Z3 RNA5SP299-201ENST00000391203 116 ntBASIC0.13□□□□□ -2.39
PCIF1Q9H4Z3 MIR1295A-201ENST00000408463 79 ntBASIC0.13□□□□□ -2.39
PCIF1Q9H4Z3 Y_RNA.633-201ENST00000459107 95 ntBASIC0.13□□□□□ -2.39
PCIF1Q9H4Z3 Y_RNA.250-201ENST00000364542 110 ntBASIC0.12□□□□□ -2.39
PCIF1Q9H4Z3 SNORD2-201ENST00000459163 69 ntBASIC0.12□□□□□ -2.39
PCIF1Q9H4Z3 RNU6-180P-201ENST00000516697 61 ntBASIC0.12□□□□□ -2.39
PCIF1Q9H4Z3 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.12□□□□□ -2.39
PCIF1Q9H4Z3 CR383656.4-201ENST00000546909 122 ntBASIC0.12□□□□□ -2.39
PCIF1Q9H4Z3 SNORD45.1-201ENST00000363181 77 ntBASIC0.11□□□□□ -2.39
PCIF1Q9H4Z3 RNU6-70P-201ENST00000516438 60 ntBASIC0.11□□□□□ -2.39
PCIF1Q9H4Z3 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.11□□□□□ -2.39
PCIF1Q9H4Z3 U7.4-201ENST00000614961 63 ntBASIC0.11□□□□□ -2.39
PCIF1Q9H4Z3 MIR4768-201ENST00000585270 74 ntBASIC0.1□□□□□ -2.39
PCIF1Q9H4Z3 MIR148A-201ENST00000362215 68 ntBASIC0.09□□□□□ -2.4
PCIF1Q9H4Z3 Y_RNA.68-201ENST00000362881 102 ntBASIC0.09□□□□□ -2.4
PCIF1Q9H4Z3 RNA5SP98-201ENST00000363158 137 ntBASIC0.09□□□□□ -2.4
PCIF1Q9H4Z3 Y_RNA.244-201ENST00000364484 109 ntBASIC0.09□□□□□ -2.4
PCIF1Q9H4Z3 RNU7-159P-201ENST00000459284 62 ntBASIC0.09□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 181 ms