Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MIR3925-201ENST00000584674 77 ntBASIC0.25□□□□□ -2.37
MMP28Q9H239 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.25□□□□□ -2.37
MMP28Q9H239 MIR2909-201ENST00000617113 69 ntBASIC0.25□□□□□ -2.37
MMP28Q9H239 MIR203A-201ENST00000384836 110 ntBASIC0.24□□□□□ -2.37
MMP28Q9H239 MIR643-201ENST00000385267 97 ntBASIC0.24□□□□□ -2.37
MMP28Q9H239 RNU7-188P-201ENST00000517063 64 ntBASIC0.24□□□□□ -2.37
MMP28Q9H239 RNU6-303P-201ENST00000517091 106 ntBASIC0.24□□□□□ -2.37
MMP28Q9H239 RNU6-330P-201ENST00000363015 107 ntBASIC0.23□□□□□ -2.37
MMP28Q9H239 RNU6-681P-201ENST00000364012 104 ntBASIC0.23□□□□□ -2.37
MMP28Q9H239 RNU6-1039P-201ENST00000383931 107 ntBASIC0.23□□□□□ -2.37
MMP28Q9H239 AL691482.2-201ENST00000457453 84 ntBASIC0.23□□□□□ -2.37
MMP28Q9H239 SCARNA17.3-201ENST00000516381 125 ntBASIC0.23□□□□□ -2.37
MMP28Q9H239 MIR6509-201ENST00000614603 85 ntBASIC0.23□□□□□ -2.37
MMP28Q9H239 AC084368.1-201ENST00000620935 65 ntBASIC0.23□□□□□ -2.37
MMP28Q9H239 RNU6-1094P-201ENST00000362416 104 ntBASIC0.22□□□□□ -2.37
MMP28Q9H239 SNORD114-4-201ENST00000363962 75 ntBASIC0.22□□□□□ -2.37
MMP28Q9H239 MIR582-201ENST00000365731 98 ntBASIC0.22□□□□□ -2.37
MMP28Q9H239 AC074348.1-201ENST00000426503 132 ntBASIC0.22□□□□□ -2.37
MMP28Q9H239 SCARNA18B-201ENST00000458806 135 ntBASIC0.22□□□□□ -2.37
MMP28Q9H239 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
MMP28Q9H239 AC023932.2-201ENST00000603176 175 ntBASIC0.22□□□□□ -2.37
MMP28Q9H239 Y_RNA.68-201ENST00000362881 102 ntBASIC0.21□□□□□ -2.38
MMP28Q9H239 RNU6-380P-201ENST00000410207 107 ntBASIC0.21□□□□□ -2.38
MMP28Q9H239 RNU6-857P-201ENST00000515893 110 ntBASIC0.21□□□□□ -2.38
MMP28Q9H239 SCARNA11.2-201ENST00000517183 154 ntBASIC0.21□□□□□ -2.38
MMP28Q9H239 SNORA40.17-201ENST00000517256 115 ntBASIC0.21□□□□□ -2.38
MMP28Q9H239 SNORA8.1-201ENST00000384250 140 ntBASIC0.2□□□□□ -2.38
MMP28Q9H239 RNA5SP63-201ENST00000391225 112 ntBASIC0.2□□□□□ -2.38
MMP28Q9H239 RNU6-279P-201ENST00000391297 101 ntBASIC0.2□□□□□ -2.38
MMP28Q9H239 MIR548E-201ENST00000408287 88 ntBASIC0.2□□□□□ -2.38
MMP28Q9H239 Y_RNA.681-201ENST00000516445 113 ntBASIC0.2□□□□□ -2.38
MMP28Q9H239 RN7SL660P-201ENST00000614852 299 ntBASIC0.2□□□□□ -2.38
MMP28Q9H239 Y_RNA.788-201ENST00000622394 112 ntBASIC0.2□□□□□ -2.38
MMP28Q9H239 SNORD114-29-201ENST00000364819 70 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 RNU6-260P-201ENST00000384092 107 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 MIR876-201ENST00000401147 81 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 RNA5SP147-201ENST00000516493 109 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 RNA5SP395-201ENST00000516567 118 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 RNU6-807P-201ENST00000516805 107 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 RNU6-782P-201ENST00000516852 104 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 RNU6-175P-201ENST00000516896 107 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 MIR3657-201ENST00000584818 117 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 MIR4315-1-201ENST00000636800 73 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 MIR1297-201ENST00000637311 77 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 MIR4315-2-201ENST00000640925 73 ntBASIC0.19□□□□□ -2.38
MMP28Q9H239 MIR20A-201ENST00000362279 71 ntBASIC0.18□□□□□ -2.38
MMP28Q9H239 RNU6-1275P-201ENST00000391087 107 ntBASIC0.18□□□□□ -2.38
MMP28Q9H239 MIR548H2-201ENST00000408874 88 ntBASIC0.18□□□□□ -2.38
MMP28Q9H239 snoU13.13-201ENST00000458842 104 ntBASIC0.18□□□□□ -2.38
MMP28Q9H239 RNU6-752P-201ENST00000516376 102 ntBASIC0.18□□□□□ -2.38
MMP28Q9H239 MIR664A-201ENST00000626086 82 ntBASIC0.18□□□□□ -2.38
MMP28Q9H239 SNORA75.1-201ENST00000391130 148 ntBASIC0.17□□□□□ -2.38
MMP28Q9H239 AC244090.1-201ENST00000441884 93 ntBASIC0.17□□□□□ -2.38
MMP28Q9H239 MIR3675-201ENST00000583661 73 ntBASIC0.17□□□□□ -2.38
MMP28Q9H239 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.16□□□□□ -2.38
MMP28Q9H239 Y_RNA.685-201ENST00000516532 108 ntBASIC0.16□□□□□ -2.38
MMP28Q9H239 AC104408.1-201ENST00000605241 170 ntBASIC0.16□□□□□ -2.38
MMP28Q9H239 MIR6718-201ENST00000616153 80 ntBASIC0.16□□□□□ -2.38
MMP28Q9H239 SNORA2.1-201ENST00000363089 137 ntBASIC0.15□□□□□ -2.39
MMP28Q9H239 Y_RNA.178-201ENST00000363832 102 ntBASIC0.15□□□□□ -2.39
MMP28Q9H239 RNU6-24P-201ENST00000384440 107 ntBASIC0.15□□□□□ -2.39
MMP28Q9H239 MIR593-201ENST00000384856 100 ntBASIC0.15□□□□□ -2.39
MMP28Q9H239 AC021146.9-201ENST00000512503 156 ntBASIC0.15□□□□□ -2.39
MMP28Q9H239 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.15□□□□□ -2.39
MMP28Q9H239 RNA5SP214-201ENST00000363378 118 ntBASIC0.14□□□□□ -2.39
MMP28Q9H239 SNORA63.6-201ENST00000364921 119 ntBASIC0.14□□□□□ -2.39
MMP28Q9H239 RNU6-1036P-201ENST00000383959 104 ntBASIC0.14□□□□□ -2.39
MMP28Q9H239 SNORA49-201ENST00000386157 136 ntBASIC0.14□□□□□ -2.39
MMP28Q9H239 RNA5SP163-201ENST00000410304 99 ntBASIC0.14□□□□□ -2.39
MMP28Q9H239 MIR3134-201ENST00000579433 74 ntBASIC0.14□□□□□ -2.39
MMP28Q9H239 SNORA42.1-201ENST00000363515 137 ntBASIC0.13□□□□□ -2.39
MMP28Q9H239 MIR106A-201ENST00000384870 81 ntBASIC0.13□□□□□ -2.39
MMP28Q9H239 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.13□□□□□ -2.39
MMP28Q9H239 MIR889-201ENST00000401280 79 ntBASIC0.13□□□□□ -2.39
MMP28Q9H239 MIR6514-201ENST00000622549 70 ntBASIC0.13□□□□□ -2.39
MMP28Q9H239 SNORD114-5-201ENST00000362928 70 ntBASIC0.12□□□□□ -2.39
MMP28Q9H239 SNORD114-9-201ENST00000364370 72 ntBASIC0.12□□□□□ -2.39
MMP28Q9H239 Y_RNA.244-201ENST00000364484 109 ntBASIC0.12□□□□□ -2.39
MMP28Q9H239 Y_RNA.433-201ENST00000384089 102 ntBASIC0.12□□□□□ -2.39
MMP28Q9H239 MIR610-201ENST00000385139 96 ntBASIC0.12□□□□□ -2.39
MMP28Q9H239 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.12□□□□□ -2.39
MMP28Q9H239 RNU6-604P-201ENST00000390917 100 ntBASIC0.12□□□□□ -2.39
MMP28Q9H239 U7.4-201ENST00000614961 63 ntBASIC0.12□□□□□ -2.39
MMP28Q9H239 SNORD45.1-201ENST00000363181 77 ntBASIC0.11□□□□□ -2.39
MMP28Q9H239 MIR145-201ENST00000384967 88 ntBASIC0.11□□□□□ -2.39
MMP28Q9H239 RNA5SP299-201ENST00000391203 116 ntBASIC0.11□□□□□ -2.39
MMP28Q9H239 MIR1295A-201ENST00000408463 79 ntBASIC0.11□□□□□ -2.39
MMP28Q9H239 RNU6-70P-201ENST00000516438 60 ntBASIC0.11□□□□□ -2.39
MMP28Q9H239 RNA5SP285-201ENST00000516619 119 ntBASIC0.11□□□□□ -2.39
MMP28Q9H239 AC145423.2-201ENST00000610631 239 ntBASIC0.11□□□□□ -2.39
MMP28Q9H239 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.11□□□□□ -2.39
MMP28Q9H239 Y_RNA.633-201ENST00000459107 95 ntBASIC0.1□□□□□ -2.39
MMP28Q9H239 RNU6-180P-201ENST00000516697 61 ntBASIC0.09□□□□□ -2.4
MMP28Q9H239 MIR5190-201ENST00000581537 80 ntBASIC0.09□□□□□ -2.4
MMP28Q9H239 RNU6-1241P-201ENST00000384536 107 ntBASIC0.08□□□□□ -2.4
MMP28Q9H239 MIR892B-201ENST00000401279 77 ntBASIC0.08□□□□□ -2.4
MMP28Q9H239 MIR4768-201ENST00000585270 74 ntBASIC0.08□□□□□ -2.4
MMP28Q9H239 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.08□□□□□ -2.4
MMP28Q9H239 SNORD115-22-201ENST00000364456 82 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 216.2 ms