Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 RNA5SP94-201ENST00000516917 108 ntBASIC0.79□□□□□ -2.28
LRFN3Q9BTN0 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.79□□□□□ -2.28
LRFN3Q9BTN0 RNU5B-6P-201ENST00000516765 68 ntBASIC0.78□□□□□ -2.28
LRFN3Q9BTN0 RNU6-260P-201ENST00000384092 107 ntBASIC0.77□□□□□ -2.29
LRFN3Q9BTN0 MIR140-201ENST00000385282 100 ntBASIC0.77□□□□□ -2.29
LRFN3Q9BTN0 RNA5SP63-201ENST00000391225 112 ntBASIC0.77□□□□□ -2.29
LRFN3Q9BTN0 MIR3657-201ENST00000584818 117 ntBASIC0.77□□□□□ -2.29
LRFN3Q9BTN0 AC069503.3-201ENST00000618674 145 ntBASIC0.77□□□□□ -2.29
LRFN3Q9BTN0 RNU6-1216P-201ENST00000362590 107 ntBASIC0.76□□□□□ -2.29
LRFN3Q9BTN0 SNORD116-24-201ENST00000384549 92 ntBASIC0.76□□□□□ -2.29
LRFN3Q9BTN0 RNU6-630P-201ENST00000391258 106 ntBASIC0.76□□□□□ -2.29
LRFN3Q9BTN0 RNU6-982P-201ENST00000516216 102 ntBASIC0.76□□□□□ -2.29
LRFN3Q9BTN0 SNORA62.5-201ENST00000516634 120 ntBASIC0.76□□□□□ -2.29
LRFN3Q9BTN0 AC018659.1-201ENST00000551083 169 ntBASIC0.76□□□□□ -2.29
LRFN3Q9BTN0 MIR7107-201ENST00000611489 80 ntBASIC0.76□□□□□ -2.29
LRFN3Q9BTN0 RNU6-990P-201ENST00000364385 104 ntBASIC0.75□□□□□ -2.29
LRFN3Q9BTN0 Y_RNA.340-201ENST00000365330 92 ntBASIC0.75□□□□□ -2.29
LRFN3Q9BTN0 RNY1P8-201ENST00000383970 114 ntBASIC0.75□□□□□ -2.29
LRFN3Q9BTN0 AC125388.1-201ENST00000459631 156 ntBASIC0.75□□□□□ -2.29
LRFN3Q9BTN0 SNORA40.17-201ENST00000517256 115 ntBASIC0.75□□□□□ -2.29
LRFN3Q9BTN0 AC005520.4-201ENST00000604337 90 ntBASIC0.75□□□□□ -2.29
LRFN3Q9BTN0 MIR329-2-201ENST00000385029 84 ntBASIC0.74□□□□□ -2.29
LRFN3Q9BTN0 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.74□□□□□ -2.29
LRFN3Q9BTN0 MIR6866-201ENST00000638146 69 ntBASIC0.74□□□□□ -2.29
LRFN3Q9BTN0 AC073869.9-201ENST00000641610 120 ntBASIC0.74□□□□□ -2.29
LRFN3Q9BTN0 Y_RNA.443-201ENST00000384135 111 ntBASIC0.73□□□□□ -2.29
LRFN3Q9BTN0 MIR5589-201ENST00000579442 60 ntBASIC0.73□□□□□ -2.29
LRFN3Q9BTN0 MIR5087-201ENST00000635826 76 ntBASIC0.73□□□□□ -2.29
LRFN3Q9BTN0 SNORA2.1-201ENST00000363089 137 ntBASIC0.72□□□□□ -2.29
LRFN3Q9BTN0 SNORD114-4-201ENST00000363962 75 ntBASIC0.72□□□□□ -2.29
LRFN3Q9BTN0 MIR146A-201ENST00000385201 99 ntBASIC0.72□□□□□ -2.29
LRFN3Q9BTN0 AC006210.1-201ENST00000424882 111 ntBASIC0.72□□□□□ -2.29
LRFN3Q9BTN0 MIR4514-201ENST00000581410 57 ntBASIC0.72□□□□□ -2.29
LRFN3Q9BTN0 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.72□□□□□ -2.29
LRFN3Q9BTN0 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
LRFN3Q9BTN0 SNORA25.4-201ENST00000363666 124 ntBASIC0.71□□□□□ -2.3
LRFN3Q9BTN0 RNA5SP517-201ENST00000364724 117 ntBASIC0.71□□□□□ -2.3
LRFN3Q9BTN0 SNORD110-201ENST00000408189 75 ntBASIC0.71□□□□□ -2.3
LRFN3Q9BTN0 RNA5SP147-201ENST00000516493 109 ntBASIC0.71□□□□□ -2.3
LRFN3Q9BTN0 MIR4752-201ENST00000579672 72 ntBASIC0.71□□□□□ -2.3
LRFN3Q9BTN0 RNU6-645P-201ENST00000364649 106 ntBASIC0.7□□□□□ -2.3
LRFN3Q9BTN0 RNU6-471P-201ENST00000383944 106 ntBASIC0.7□□□□□ -2.3
LRFN3Q9BTN0 RNU6-30P-201ENST00000384561 107 ntBASIC0.7□□□□□ -2.3
LRFN3Q9BTN0 RNU6-229P-201ENST00000516614 102 ntBASIC0.7□□□□□ -2.3
LRFN3Q9BTN0 MIR548AE1-201ENST00000583292 70 ntBASIC0.7□□□□□ -2.3
LRFN3Q9BTN0 SNORA70.25-201ENST00000612741 95 ntBASIC0.7□□□□□ -2.3
LRFN3Q9BTN0 AC092634.7-201ENST00000621022 103 ntBASIC0.7□□□□□ -2.3
LRFN3Q9BTN0 SNORD114-2-201ENST00000363953 78 ntBASIC0.69□□□□□ -2.3
LRFN3Q9BTN0 RNA5SP499-201ENST00000363982 119 ntBASIC0.69□□□□□ -2.3
LRFN3Q9BTN0 Y_RNA.407-201ENST00000383986 113 ntBASIC0.69□□□□□ -2.3
LRFN3Q9BTN0 MIR652-201ENST00000385278 98 ntBASIC0.69□□□□□ -2.3
LRFN3Q9BTN0 MTND4LP1-201ENST00000446263 157 ntBASIC0.69□□□□□ -2.3
LRFN3Q9BTN0 RNU6-351P-201ENST00000516097 100 ntBASIC0.69□□□□□ -2.3
LRFN3Q9BTN0 MIR4802-201ENST00000581881 80 ntBASIC0.68□□□□□ -2.3
LRFN3Q9BTN0 MIR4473-201ENST00000583731 91 ntBASIC0.68□□□□□ -2.3
LRFN3Q9BTN0 RNU1-29P-201ENST00000606574 126 ntBASIC0.68□□□□□ -2.3
LRFN3Q9BTN0 RNU6-668P-201ENST00000364180 107 ntBASIC0.67□□□□□ -2.3
LRFN3Q9BTN0 SNORD71-201ENST00000411292 86 ntBASIC0.67□□□□□ -2.3
LRFN3Q9BTN0 AC069271.1-201ENST00000445577 156 ntBASIC0.67□□□□□ -2.3
LRFN3Q9BTN0 SCARNA17.3-201ENST00000516381 125 ntBASIC0.67□□□□□ -2.3
LRFN3Q9BTN0 SNORA25.18-201ENST00000607153 114 ntBASIC0.67□□□□□ -2.3
LRFN3Q9BTN0 MIR6739-201ENST00000622461 75 ntBASIC0.67□□□□□ -2.3
LRFN3Q9BTN0 RNA5SP25-201ENST00000410815 110 ntBASIC0.66□□□□□ -2.3
LRFN3Q9BTN0 snoU13.13-201ENST00000458842 104 ntBASIC0.66□□□□□ -2.3
LRFN3Q9BTN0 RNU6-656P-201ENST00000516785 107 ntBASIC0.66□□□□□ -2.3
LRFN3Q9BTN0 AC243829.6-201ENST00000612652 106 ntBASIC0.66□□□□□ -2.3
LRFN3Q9BTN0 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.65□□□□□ -2.31
LRFN3Q9BTN0 SNORD118-201ENST00000363593 134 ntBASIC0.65□□□□□ -2.31
LRFN3Q9BTN0 Y_RNA.250-201ENST00000364542 110 ntBASIC0.65□□□□□ -2.31
LRFN3Q9BTN0 HMGN2P22-201ENST00000427588 175 ntBASIC0.65□□□□□ -2.31
LRFN3Q9BTN0 AC023932.2-201ENST00000603176 175 ntBASIC0.65□□□□□ -2.31
LRFN3Q9BTN0 MIR582-201ENST00000365731 98 ntBASIC0.64□□□□□ -2.31
LRFN3Q9BTN0 RNU6-945P-201ENST00000383947 107 ntBASIC0.64□□□□□ -2.31
LRFN3Q9BTN0 SNORA40.8-201ENST00000411034 126 ntBASIC0.64□□□□□ -2.31
LRFN3Q9BTN0 RNU4-54P-201ENST00000516428 129 ntBASIC0.64□□□□□ -2.31
LRFN3Q9BTN0 MIR4511-201ENST00000582784 87 ntBASIC0.64□□□□□ -2.31
LRFN3Q9BTN0 SNORA2A-201ENST00000383885 135 ntBASIC0.63□□□□□ -2.31
LRFN3Q9BTN0 Y_RNA.633-201ENST00000459107 95 ntBASIC0.63□□□□□ -2.31
LRFN3Q9BTN0 AC021146.9-201ENST00000512503 156 ntBASIC0.63□□□□□ -2.31
LRFN3Q9BTN0 MIR5706-201ENST00000579841 80 ntBASIC0.63□□□□□ -2.31
LRFN3Q9BTN0 AC103706.3-201ENST00000636297 85 ntBASIC0.63□□□□□ -2.31
LRFN3Q9BTN0 Y_RNA.375-201ENST00000365625 101 ntBASIC0.62□□□□□ -2.31
LRFN3Q9BTN0 RNU6-1162P-201ENST00000384443 104 ntBASIC0.62□□□□□ -2.31
LRFN3Q9BTN0 MIR9-2-201ENST00000384838 87 ntBASIC0.62□□□□□ -2.31
LRFN3Q9BTN0 uc_338.10-201ENST00000621872 182 ntBASIC0.62□□□□□ -2.31
LRFN3Q9BTN0 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.62□□□□□ -2.31
LRFN3Q9BTN0 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
LRFN3Q9BTN0 Y_RNA.125-201ENST00000363371 111 ntBASIC0.61□□□□□ -2.31
LRFN3Q9BTN0 MIR521-2-201ENST00000384818 87 ntBASIC0.61□□□□□ -2.31
LRFN3Q9BTN0 MIR518A1-201ENST00000385068 85 ntBASIC0.61□□□□□ -2.31
LRFN3Q9BTN0 MIR548E-201ENST00000408287 88 ntBASIC0.61□□□□□ -2.31
LRFN3Q9BTN0 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.61□□□□□ -2.31
LRFN3Q9BTN0 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.6□□□□□ -2.31
LRFN3Q9BTN0 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.6□□□□□ -2.31
LRFN3Q9BTN0 SNORA63.6-201ENST00000364921 119 ntBASIC0.6□□□□□ -2.31
LRFN3Q9BTN0 SNORA15B-2-201ENST00000384058 135 ntBASIC0.6□□□□□ -2.31
LRFN3Q9BTN0 SNORA15B-1-201ENST00000384334 135 ntBASIC0.6□□□□□ -2.31
LRFN3Q9BTN0 Z95118.1-201ENST00000421372 247 ntBASIC0.6□□□□□ -2.31
LRFN3Q9BTN0 AL157398.1-201ENST00000452981 186 ntBASIC0.6□□□□□ -2.31
LRFN3Q9BTN0 RNU6-1089P-201ENST00000516473 104 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 227 ms