Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 Y_RNA.355-201ENST00000365462 98 ntBASIC0.86□□□□□ -2.27
ZKSCAN3Q9BRR0 snoU13.13-201ENST00000458842 104 ntBASIC0.86□□□□□ -2.27
ZKSCAN3Q9BRR0 RNU6-848P-201ENST00000515948 107 ntBASIC0.86□□□□□ -2.27
ZKSCAN3Q9BRR0 RNU6-617P-201ENST00000516147 107 ntBASIC0.86□□□□□ -2.27
ZKSCAN3Q9BRR0 RNU6-473P-201ENST00000516164 107 ntBASIC0.86□□□□□ -2.27
ZKSCAN3Q9BRR0 RNA5SP220-201ENST00000516298 104 ntBASIC0.86□□□□□ -2.27
ZKSCAN3Q9BRR0 RNU6-1049P-201ENST00000516414 107 ntBASIC0.86□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR4511-201ENST00000582784 87 ntBASIC0.86□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR6866-201ENST00000638146 69 ntBASIC0.86□□□□□ -2.27
ZKSCAN3Q9BRR0 RNU6-42P-201ENST00000384165 107 ntBASIC0.85□□□□□ -2.27
ZKSCAN3Q9BRR0 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR548E-201ENST00000408287 88 ntBASIC0.85□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR4714-201ENST00000580728 77 ntBASIC0.85□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR151B-201ENST00000584249 96 ntBASIC0.85□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR6835-201ENST00000621552 64 ntBASIC0.85□□□□□ -2.27
ZKSCAN3Q9BRR0 Y_RNA.375-201ENST00000365625 101 ntBASIC0.84□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR582-201ENST00000365731 98 ntBASIC0.84□□□□□ -2.27
ZKSCAN3Q9BRR0 Y_RNA.423-201ENST00000384057 113 ntBASIC0.84□□□□□ -2.27
ZKSCAN3Q9BRR0 AC098934.3-201ENST00000430450 190 ntBASIC0.84□□□□□ -2.27
ZKSCAN3Q9BRR0 Y_RNA.633-201ENST00000459107 95 ntBASIC0.84□□□□□ -2.27
ZKSCAN3Q9BRR0 AL109933.3-201ENST00000619095 188 ntBASIC0.84□□□□□ -2.27
ZKSCAN3Q9BRR0 MIR20A-201ENST00000362279 71 ntBASIC0.83□□□□□ -2.28
ZKSCAN3Q9BRR0 MIR146A-201ENST00000385201 99 ntBASIC0.83□□□□□ -2.28
ZKSCAN3Q9BRR0 AC244090.1-201ENST00000441884 93 ntBASIC0.83□□□□□ -2.28
ZKSCAN3Q9BRR0 snoU13.18-201ENST00000459483 104 ntBASIC0.83□□□□□ -2.28
ZKSCAN3Q9BRR0 RNU6-542P-201ENST00000516405 103 ntBASIC0.83□□□□□ -2.28
ZKSCAN3Q9BRR0 RNU4-54P-201ENST00000516428 129 ntBASIC0.83□□□□□ -2.28
ZKSCAN3Q9BRR0 RNA5SP215-201ENST00000363440 122 ntBASIC0.82□□□□□ -2.28
ZKSCAN3Q9BRR0 MIR508-201ENST00000384857 115 ntBASIC0.82□□□□□ -2.28
ZKSCAN3Q9BRR0 RNU6-863P-201ENST00000515989 104 ntBASIC0.81□□□□□ -2.28
ZKSCAN3Q9BRR0 RNU6-1089P-201ENST00000516473 104 ntBASIC0.81□□□□□ -2.28
ZKSCAN3Q9BRR0 SNORD114-29-201ENST00000364819 70 ntBASIC0.8□□□□□ -2.28
ZKSCAN3Q9BRR0 AL157398.1-201ENST00000452981 186 ntBASIC0.8□□□□□ -2.28
ZKSCAN3Q9BRR0 RNA5SP436-201ENST00000516020 115 ntBASIC0.8□□□□□ -2.28
ZKSCAN3Q9BRR0 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
ZKSCAN3Q9BRR0 MIR5000-201ENST00000577717 103 ntBASIC0.79□□□□□ -2.28
ZKSCAN3Q9BRR0 MIR6755-201ENST00000619993 66 ntBASIC0.79□□□□□ -2.28
ZKSCAN3Q9BRR0 MIR516B1-201ENST00000385211 90 ntBASIC0.78□□□□□ -2.28
ZKSCAN3Q9BRR0 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.78□□□□□ -2.28
ZKSCAN3Q9BRR0 SNORD2-201ENST00000459163 69 ntBASIC0.78□□□□□ -2.28
ZKSCAN3Q9BRR0 RNU6-1223P-201ENST00000517124 104 ntBASIC0.78□□□□□ -2.28
ZKSCAN3Q9BRR0 SNORA33.1-201ENST00000364957 130 ntBASIC0.77□□□□□ -2.29
ZKSCAN3Q9BRR0 RNU6-945P-201ENST00000383947 107 ntBASIC0.77□□□□□ -2.29
ZKSCAN3Q9BRR0 MIR760-201ENST00000390220 80 ntBASIC0.77□□□□□ -2.29
ZKSCAN3Q9BRR0 MIR7111-201ENST00000619751 72 ntBASIC0.77□□□□□ -2.29
ZKSCAN3Q9BRR0 RNU6-302P-201ENST00000365249 107 ntBASIC0.76□□□□□ -2.29
ZKSCAN3Q9BRR0 MIR501-201ENST00000390204 84 ntBASIC0.76□□□□□ -2.29
ZKSCAN3Q9BRR0 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.76□□□□□ -2.29
ZKSCAN3Q9BRR0 MIR4677-201ENST00000584153 80 ntBASIC0.76□□□□□ -2.29
ZKSCAN3Q9BRR0 MIR548C-201ENST00000384815 97 ntBASIC0.75□□□□□ -2.29
ZKSCAN3Q9BRR0 RNA5SP299-201ENST00000391203 116 ntBASIC0.75□□□□□ -2.29
ZKSCAN3Q9BRR0 RNU6-1232P-201ENST00000516299 86 ntBASIC0.75□□□□□ -2.29
ZKSCAN3Q9BRR0 MIR548AD-201ENST00000584780 82 ntBASIC0.75□□□□□ -2.29
ZKSCAN3Q9BRR0 AC022709.1-201ENST00000615967 87 ntBASIC0.75□□□□□ -2.29
ZKSCAN3Q9BRR0 RNA5SP128-201ENST00000365305 116 ntBASIC0.74□□□□□ -2.29
ZKSCAN3Q9BRR0 RNU7-188P-201ENST00000517063 64 ntBASIC0.74□□□□□ -2.29
ZKSCAN3Q9BRR0 MIR9-2-201ENST00000384838 87 ntBASIC0.73□□□□□ -2.29
ZKSCAN3Q9BRR0 MIR489-201ENST00000384923 84 ntBASIC0.73□□□□□ -2.29
ZKSCAN3Q9BRR0 U6.96-201ENST00000636425 70 ntBASIC0.73□□□□□ -2.29
ZKSCAN3Q9BRR0 RNU6-669P-201ENST00000365575 107 ntBASIC0.72□□□□□ -2.29
ZKSCAN3Q9BRR0 AC110620.1-201ENST00000416042 228 ntBASIC0.72□□□□□ -2.29
ZKSCAN3Q9BRR0 SCARNA21.1-201ENST00000515996 128 ntBASIC0.72□□□□□ -2.29
ZKSCAN3Q9BRR0 AC084368.1-201ENST00000620935 65 ntBASIC0.72□□□□□ -2.29
ZKSCAN3Q9BRR0 RNA5SP499-201ENST00000363982 119 ntBASIC0.71□□□□□ -2.3
ZKSCAN3Q9BRR0 AC243829.6-201ENST00000612652 106 ntBASIC0.71□□□□□ -2.3
ZKSCAN3Q9BRR0 U2.7-201ENST00000619197 100 ntBASIC0.71□□□□□ -2.3
ZKSCAN3Q9BRR0 MIR6515-201ENST00000619843 57 ntBASIC0.71□□□□□ -2.3
ZKSCAN3Q9BRR0 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
ZKSCAN3Q9BRR0 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.71□□□□□ -2.3
ZKSCAN3Q9BRR0 SNORD44.1-201ENST00000363202 61 ntBASIC0.7□□□□□ -2.3
ZKSCAN3Q9BRR0 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.7□□□□□ -2.3
ZKSCAN3Q9BRR0 MIR548V-201ENST00000584165 80 ntBASIC0.7□□□□□ -2.3
ZKSCAN3Q9BRR0 MIR517B-201ENST00000385102 67 ntBASIC0.69□□□□□ -2.3
ZKSCAN3Q9BRR0 RNU7-129P-201ENST00000516128 62 ntBASIC0.69□□□□□ -2.3
ZKSCAN3Q9BRR0 RNA5SP121-201ENST00000516537 101 ntBASIC0.69□□□□□ -2.3
ZKSCAN3Q9BRR0 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.69□□□□□ -2.3
ZKSCAN3Q9BRR0 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.67□□□□□ -2.3
ZKSCAN3Q9BRR0 RNU7-174P-201ENST00000516248 59 ntBASIC0.67□□□□□ -2.3
ZKSCAN3Q9BRR0 RNU6-698P-201ENST00000363523 107 ntBASIC0.66□□□□□ -2.3
ZKSCAN3Q9BRR0 SNORA25.5-201ENST00000363782 126 ntBASIC0.66□□□□□ -2.3
ZKSCAN3Q9BRR0 RNU6-34P-201ENST00000364874 107 ntBASIC0.66□□□□□ -2.3
ZKSCAN3Q9BRR0 SNORA68.3-201ENST00000515906 83 ntBASIC0.66□□□□□ -2.3
ZKSCAN3Q9BRR0 RNU6-175P-201ENST00000516896 107 ntBASIC0.66□□□□□ -2.3
ZKSCAN3Q9BRR0 CYP3A54P-201ENST00000566950 75 ntBASIC0.66□□□□□ -2.3
ZKSCAN3Q9BRR0 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.65□□□□□ -2.31
ZKSCAN3Q9BRR0 MIR876-201ENST00000401147 81 ntBASIC0.65□□□□□ -2.31
ZKSCAN3Q9BRR0 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.65□□□□□ -2.31
ZKSCAN3Q9BRR0 MIR499B-201ENST00000636498 73 ntBASIC0.65□□□□□ -2.31
ZKSCAN3Q9BRR0 SNORA9.1-201ENST00000362412 131 ntBASIC0.64□□□□□ -2.31
ZKSCAN3Q9BRR0 MIR92A1-201ENST00000385233 78 ntBASIC0.64□□□□□ -2.31
ZKSCAN3Q9BRR0 SNORD113-2-201ENST00000391082 72 ntBASIC0.64□□□□□ -2.31
ZKSCAN3Q9BRR0 MIR598-201ENST00000384868 97 ntBASIC0.63□□□□□ -2.31
ZKSCAN3Q9BRR0 MIR630-201ENST00000384957 97 ntBASIC0.63□□□□□ -2.31
ZKSCAN3Q9BRR0 SNORA49-201ENST00000386157 136 ntBASIC0.63□□□□□ -2.31
ZKSCAN3Q9BRR0 SNORA75.1-201ENST00000391130 148 ntBASIC0.63□□□□□ -2.31
ZKSCAN3Q9BRR0 MIR3925-201ENST00000584674 77 ntBASIC0.63□□□□□ -2.31
ZKSCAN3Q9BRR0 RNU6-92P-201ENST00000605893 104 ntBASIC0.63□□□□□ -2.31
ZKSCAN3Q9BRR0 AC243829.3-201ENST00000622177 108 ntBASIC0.63□□□□□ -2.31
ZKSCAN3Q9BRR0 MIRLET7D-201ENST00000362263 87 ntBASIC0.62□□□□□ -2.31
ZKSCAN3Q9BRR0 AL021921.1-201ENST00000442774 93 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 260.5 ms