Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNU6-696P-201ENST00000390834 107 ntBASIC1.59□□□□□ -2.15
NPAS3Q8IXF0 RNA5SP94-201ENST00000516917 108 ntBASIC1.59□□□□□ -2.15
NPAS3Q8IXF0 SNORA70.22-201ENST00000517160 124 ntBASIC1.59□□□□□ -2.15
NPAS3Q8IXF0 SNORA31.24-201ENST00000517232 57 ntBASIC1.59□□□□□ -2.15
NPAS3Q8IXF0 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.59□□□□□ -2.16
NPAS3Q8IXF0 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.58□□□□□ -2.16
NPAS3Q8IXF0 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.58□□□□□ -2.16
NPAS3Q8IXF0 MIR429-201ENST00000362106 83 ntBASIC1.58□□□□□ -2.16
NPAS3Q8IXF0 SNORD115-25-201ENST00000362619 82 ntBASIC1.58□□□□□ -2.16
NPAS3Q8IXF0 RNU6-822P-201ENST00000362707 106 ntBASIC1.58□□□□□ -2.16
NPAS3Q8IXF0 RNU6-721P-201ENST00000410155 105 ntBASIC1.58□□□□□ -2.16
NPAS3Q8IXF0 SNORD105-201ENST00000386910 85 ntBASIC1.57□□□□□ -2.16
NPAS3Q8IXF0 MIR3612-201ENST00000579753 87 ntBASIC1.57□□□□□ -2.16
NPAS3Q8IXF0 AC138207.3-201ENST00000585289 166 ntBASIC1.57□□□□□ -2.16
NPAS3Q8IXF0 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
NPAS3Q8IXF0 RNU6-1204P-201ENST00000363948 107 ntBASIC1.56□□□□□ -2.16
NPAS3Q8IXF0 RNA5SP363-201ENST00000365072 115 ntBASIC1.56□□□□□ -2.16
NPAS3Q8IXF0 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.56□□□□□ -2.16
NPAS3Q8IXF0 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.55□□□□□ -2.16
NPAS3Q8IXF0 RNU6-337P-201ENST00000391243 106 ntBASIC1.55□□□□□ -2.16
NPAS3Q8IXF0 MIR1276-201ENST00000408707 83 ntBASIC1.55□□□□□ -2.16
NPAS3Q8IXF0 AL354695.1-201ENST00000427935 228 ntBASIC1.55□□□□□ -2.16
NPAS3Q8IXF0 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
NPAS3Q8IXF0 RNA5SP325-201ENST00000363756 130 ntBASIC1.54□□□□□ -2.16
NPAS3Q8IXF0 AC002429.1-201ENST00000437672 148 ntBASIC1.54□□□□□ -2.16
NPAS3Q8IXF0 MIR4752-201ENST00000579672 72 ntBASIC1.54□□□□□ -2.16
NPAS3Q8IXF0 AC025627.3-201ENST00000582078 182 ntBASIC1.54□□□□□ -2.16
NPAS3Q8IXF0 SNORA70.25-201ENST00000612741 95 ntBASIC1.54□□□□□ -2.16
NPAS3Q8IXF0 Y_RNA.540-201ENST00000384638 111 ntBASIC1.53□□□□□ -2.16
NPAS3Q8IXF0 RNU1-78P-201ENST00000391248 165 ntBASIC1.53□□□□□ -2.16
NPAS3Q8IXF0 RNU7-160P-201ENST00000516660 62 ntBASIC1.53□□□□□ -2.16
NPAS3Q8IXF0 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC1.52□□□□□ -2.17
NPAS3Q8IXF0 AL451105.1-201ENST00000450005 189 ntBASIC1.52□□□□□ -2.17
NPAS3Q8IXF0 RNU7-154P-201ENST00000516194 62 ntBASIC1.52□□□□□ -2.17
NPAS3Q8IXF0 RNA5SP480-201ENST00000516840 109 ntBASIC1.52□□□□□ -2.17
NPAS3Q8IXF0 RNU6-945P-201ENST00000383947 107 ntBASIC1.51□□□□□ -2.17
NPAS3Q8IXF0 RNY1P8-201ENST00000383970 114 ntBASIC1.51□□□□□ -2.17
NPAS3Q8IXF0 RNU6-997P-201ENST00000384725 107 ntBASIC1.51□□□□□ -2.17
NPAS3Q8IXF0 RNU6-995P-201ENST00000391244 107 ntBASIC1.51□□□□□ -2.17
NPAS3Q8IXF0 MIR1304-201ENST00000408243 91 ntBASIC1.51□□□□□ -2.17
NPAS3Q8IXF0 MIR6773-201ENST00000612812 74 ntBASIC1.51□□□□□ -2.17
NPAS3Q8IXF0 MIR6504-201ENST00000613520 61 ntBASIC1.51□□□□□ -2.17
NPAS3Q8IXF0 AL353770.2-201ENST00000620024 78 ntBASIC1.51□□□□□ -2.17
NPAS3Q8IXF0 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
NPAS3Q8IXF0 RNU6-742P-201ENST00000365289 107 ntBASIC1.5□□□□□ -2.17
NPAS3Q8IXF0 MIR573-201ENST00000384964 99 ntBASIC1.5□□□□□ -2.17
NPAS3Q8IXF0 RNU6-1110P-201ENST00000516462 101 ntBASIC1.5□□□□□ -2.17
NPAS3Q8IXF0 RNU6-828P-201ENST00000364876 107 ntBASIC1.49□□□□□ -2.17
NPAS3Q8IXF0 MIR4422-201ENST00000581938 83 ntBASIC1.49□□□□□ -2.17
NPAS3Q8IXF0 MIR6828-201ENST00000636181 60 ntBASIC1.49□□□□□ -2.17
NPAS3Q8IXF0 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
NPAS3Q8IXF0 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
NPAS3Q8IXF0 MIR20A-201ENST00000362279 71 ntBASIC1.48□□□□□ -2.17
NPAS3Q8IXF0 SNORA36.1-201ENST00000363424 132 ntBASIC1.48□□□□□ -2.17
NPAS3Q8IXF0 RNU6-974P-201ENST00000384099 108 ntBASIC1.48□□□□□ -2.17
NPAS3Q8IXF0 HMGN2P22-201ENST00000427588 175 ntBASIC1.48□□□□□ -2.17
NPAS3Q8IXF0 AC244090.1-201ENST00000441884 93 ntBASIC1.48□□□□□ -2.17
NPAS3Q8IXF0 RNA5SP268-201ENST00000516828 124 ntBASIC1.48□□□□□ -2.17
NPAS3Q8IXF0 Y_RNA.139-201ENST00000363464 102 ntBASIC1.47□□□□□ -2.17
NPAS3Q8IXF0 RNA5SP102-201ENST00000516865 106 ntBASIC1.47□□□□□ -2.17
NPAS3Q8IXF0 MIR6734-201ENST00000621166 68 ntBASIC1.47□□□□□ -2.17
NPAS3Q8IXF0 RNU6-1267P-201ENST00000410747 107 ntBASIC1.46□□□□□ -2.18
NPAS3Q8IXF0 RNU6-1262P-201ENST00000516217 96 ntBASIC1.46□□□□□ -2.18
NPAS3Q8IXF0 RNA5SP470-201ENST00000516463 106 ntBASIC1.46□□□□□ -2.18
NPAS3Q8IXF0 MIR4285-201ENST00000581001 85 ntBASIC1.46□□□□□ -2.18
NPAS3Q8IXF0 MIR4452-201ENST00000583004 71 ntBASIC1.46□□□□□ -2.18
NPAS3Q8IXF0 MIR7107-201ENST00000611489 80 ntBASIC1.46□□□□□ -2.18
NPAS3Q8IXF0 MIR6779-201ENST00000617283 64 ntBASIC1.46□□□□□ -2.18
NPAS3Q8IXF0 MIR320A-201ENST00000385302 82 ntBASIC1.45□□□□□ -2.18
NPAS3Q8IXF0 SNORD12-201ENST00000391002 90 ntBASIC1.45□□□□□ -2.18
NPAS3Q8IXF0 RNU6-782P-201ENST00000516852 104 ntBASIC1.45□□□□□ -2.18
NPAS3Q8IXF0 MIR3198-2-201ENST00000577868 80 ntBASIC1.45□□□□□ -2.18
NPAS3Q8IXF0 RNU6-42P-201ENST00000384165 107 ntBASIC1.44□□□□□ -2.18
NPAS3Q8IXF0 MIR548AA1-201ENST00000384971 97 ntBASIC1.44□□□□□ -2.18
NPAS3Q8IXF0 SNORA49-201ENST00000386157 136 ntBASIC1.44□□□□□ -2.18
NPAS3Q8IXF0 AC008834.1-201ENST00000511612 175 ntBASIC1.44□□□□□ -2.18
NPAS3Q8IXF0 MIR6078-201ENST00000611069 100 ntBASIC1.44□□□□□ -2.18
NPAS3Q8IXF0 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
NPAS3Q8IXF0 SNORD114-22-201ENST00000365423 72 ntBASIC1.43□□□□□ -2.18
NPAS3Q8IXF0 MIRLET7B-201ENST00000385140 83 ntBASIC1.43□□□□□ -2.18
NPAS3Q8IXF0 FABP5P4-201ENST00000437203 171 ntBASIC1.43□□□□□ -2.18
NPAS3Q8IXF0 RNU7-88P-201ENST00000458752 63 ntBASIC1.43□□□□□ -2.18
NPAS3Q8IXF0 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
NPAS3Q8IXF0 MIR125B1-201ENST00000385236 88 ntBASIC1.42□□□□□ -2.18
NPAS3Q8IXF0 RNU6-894P-201ENST00000517094 105 ntBASIC1.42□□□□□ -2.18
NPAS3Q8IXF0 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC1.42□□□□□ -2.18
NPAS3Q8IXF0 SNORA25-201ENST00000384384 134 ntBASIC1.41□□□□□ -2.18
NPAS3Q8IXF0 RNU7-188P-201ENST00000517063 64 ntBASIC1.41□□□□□ -2.18
NPAS3Q8IXF0 MIR18A-201ENST00000362310 71 ntBASIC1.4□□□□□ -2.19
NPAS3Q8IXF0 RNA5SP327-201ENST00000362494 101 ntBASIC1.4□□□□□ -2.19
NPAS3Q8IXF0 MIR29B1-201ENST00000385015 81 ntBASIC1.4□□□□□ -2.19
NPAS3Q8IXF0 SNORD124-201ENST00000459577 104 ntBASIC1.4□□□□□ -2.19
NPAS3Q8IXF0 AC011195.1-201ENST00000578177 177 ntBASIC1.4□□□□□ -2.19
NPAS3Q8IXF0 MIR4432-201ENST00000581823 84 ntBASIC1.4□□□□□ -2.19
NPAS3Q8IXF0 MIR3660-201ENST00000584845 100 ntBASIC1.4□□□□□ -2.19
NPAS3Q8IXF0 AL353803.5-201ENST00000599815 141 ntBASIC1.4□□□□□ -2.19
NPAS3Q8IXF0 RNU6-59P-201ENST00000384787 107 ntBASIC1.39□□□□□ -2.19
NPAS3Q8IXF0 RNA5SP220-201ENST00000516298 104 ntBASIC1.39□□□□□ -2.19
NPAS3Q8IXF0 SNORD114-29-201ENST00000364819 70 ntBASIC1.38□□□□□ -2.19
NPAS3Q8IXF0 RNU6-1036P-201ENST00000383959 104 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 291 ms