Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SNORA32.1-201ENST00000364514 115 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-302P-201ENST00000365249 107 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 SNORD114-12-201ENST00000365400 75 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 SNORD4A-201ENST00000459174 72 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-752P-201ENST00000516376 102 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 AP000676.1-201ENST00000533307 52 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 MIR6509-201ENST00000614603 85 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 AC006160.2-201ENST00000637708 154 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-340P-201ENST00000364005 107 ntBASIC-0.26□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-260P-201ENST00000384092 107 ntBASIC-0.26□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-557P-201ENST00000516842 110 ntBASIC-0.26□□□□□ -2.45
CCDC28AQ8IWP9 YWHAEP3-201ENST00000582767 121 ntBASIC-0.26□□□□□ -2.45
CCDC28AQ8IWP9 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.27□□□□□ -2.45
CCDC28AQ8IWP9 Y_RNA.205-201ENST00000364128 113 ntBASIC-0.27□□□□□ -2.45
CCDC28AQ8IWP9 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.27□□□□□ -2.45
CCDC28AQ8IWP9 AC021146.9-201ENST00000512503 156 ntBASIC-0.27□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-294P-201ENST00000364999 102 ntBASIC-0.28□□□□□ -2.45
CCDC28AQ8IWP9 Y_RNA.369-201ENST00000365568 117 ntBASIC-0.28□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-455P-201ENST00000384681 107 ntBASIC-0.28□□□□□ -2.45
CCDC28AQ8IWP9 RNA5SP480-201ENST00000516840 109 ntBASIC-0.28□□□□□ -2.45
CCDC28AQ8IWP9 MIR5582-201ENST00000579697 68 ntBASIC-0.28□□□□□ -2.45
CCDC28AQ8IWP9 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.29□□□□□ -2.46
CCDC28AQ8IWP9 MIR4263-201ENST00000584745 83 ntBASIC-0.29□□□□□ -2.46
CCDC28AQ8IWP9 MIR3666-201ENST00000607845 111 ntBASIC-0.29□□□□□ -2.46
CCDC28AQ8IWP9 AC145423.2-201ENST00000610631 239 ntBASIC-0.29□□□□□ -2.46
CCDC28AQ8IWP9 Y_RNA.115-201ENST00000363272 98 ntBASIC-0.3□□□□□ -2.46
CCDC28AQ8IWP9 MIR7-2-201ENST00000384970 110 ntBASIC-0.3□□□□□ -2.46
CCDC28AQ8IWP9 SNORA40.17-201ENST00000517256 115 ntBASIC-0.3□□□□□ -2.46
CCDC28AQ8IWP9 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.3□□□□□ -2.46
CCDC28AQ8IWP9 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 MIR655-201ENST00000362159 97 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 SNORA2.1-201ENST00000363089 137 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 RNU6-129P-201ENST00000391022 107 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 MIR5588-201ENST00000581890 63 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 MIR3657-201ENST00000584818 117 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.32□□□□□ -2.46
CCDC28AQ8IWP9 RNU6-686P-201ENST00000364839 107 ntBASIC-0.32□□□□□ -2.46
CCDC28AQ8IWP9 RNU6-900P-201ENST00000384498 102 ntBASIC-0.32□□□□□ -2.46
CCDC28AQ8IWP9 MIR203A-201ENST00000384836 110 ntBASIC-0.32□□□□□ -2.46
CCDC28AQ8IWP9 AL109933.3-201ENST00000619095 188 ntBASIC-0.32□□□□□ -2.46
CCDC28AQ8IWP9 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.32□□□□□ -2.46
CCDC28AQ8IWP9 MIR9-2-201ENST00000384838 87 ntBASIC-0.33□□□□□ -2.46
CCDC28AQ8IWP9 MIR450A2-201ENST00000385022 100 ntBASIC-0.33□□□□□ -2.46
CCDC28AQ8IWP9 RNA5SP170-201ENST00000517150 101 ntBASIC-0.34□□□□□ -2.46
CCDC28AQ8IWP9 RNU6-502P-201ENST00000362419 108 ntBASIC-0.35□□□□□ -2.47
CCDC28AQ8IWP9 RNA5SP457-201ENST00000363657 124 ntBASIC-0.35□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-979P-201ENST00000383896 107 ntBASIC-0.35□□□□□ -2.47
CCDC28AQ8IWP9 snoU13.13-201ENST00000458842 104 ntBASIC-0.35□□□□□ -2.47
CCDC28AQ8IWP9 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.35□□□□□ -2.47
CCDC28AQ8IWP9 RNA5SP147-201ENST00000516493 109 ntBASIC-0.35□□□□□ -2.47
CCDC28AQ8IWP9 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.36□□□□□ -2.47
CCDC28AQ8IWP9 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.36□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-303P-201ENST00000517091 106 ntBASIC-0.36□□□□□ -2.47
CCDC28AQ8IWP9 MIR6773-201ENST00000612812 74 ntBASIC-0.36□□□□□ -2.47
CCDC28AQ8IWP9 MIR2909-201ENST00000617113 69 ntBASIC-0.36□□□□□ -2.47
CCDC28AQ8IWP9 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.37□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-380P-201ENST00000410207 107 ntBASIC-0.37□□□□□ -2.47
CCDC28AQ8IWP9 RNU7-55P-201ENST00000459426 62 ntBASIC-0.37□□□□□ -2.47
CCDC28AQ8IWP9 U6.96-201ENST00000636425 70 ntBASIC-0.37□□□□□ -2.47
CCDC28AQ8IWP9 MIR494-201ENST00000349529 81 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-1298P-201ENST00000362456 101 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-478P-201ENST00000363904 110 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 Y_RNA.540-201ENST00000384638 111 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 MIR214-201ENST00000385214 110 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 RNA5SP300-201ENST00000391197 107 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 AC022137.1-201ENST00000483735 151 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 MIR7111-201ENST00000619751 72 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-242P-201ENST00000384359 107 ntBASIC-0.39□□□□□ -2.47
CCDC28AQ8IWP9 RNU7-171P-201ENST00000459581 62 ntBASIC-0.39□□□□□ -2.47
CCDC28AQ8IWP9 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.39□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-901P-201ENST00000384593 106 ntBASIC-0.4□□□□□ -2.47
CCDC28AQ8IWP9 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.41□□□□□ -2.48
CCDC28AQ8IWP9 AL590491.3-201ENST00000610731 82 ntBASIC-0.41□□□□□ -2.48
CCDC28AQ8IWP9 MIR6779-201ENST00000617283 64 ntBASIC-0.41□□□□□ -2.48
CCDC28AQ8IWP9 MIR4788-201ENST00000639104 80 ntBASIC-0.41□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-315P-201ENST00000362666 107 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-820P-201ENST00000384273 107 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 MIR329-2-201ENST00000385029 84 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 MIRLET7B-201ENST00000385140 83 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 RNA5SP66-201ENST00000517178 101 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 MIR1297-201ENST00000637311 77 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-973P-201ENST00000364690 107 ntBASIC-0.43□□□□□ -2.48
CCDC28AQ8IWP9 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.43□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.43□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-337P-201ENST00000391243 106 ntBASIC-0.43□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-807P-201ENST00000516805 107 ntBASIC-0.43□□□□□ -2.48
CCDC28AQ8IWP9 MIR521-2-201ENST00000384818 87 ntBASIC-0.44□□□□□ -2.48
CCDC28AQ8IWP9 AC074348.1-201ENST00000426503 132 ntBASIC-0.44□□□□□ -2.48
CCDC28AQ8IWP9 snoR1.1-201ENST00000628177 80 ntBASIC-0.44□□□□□ -2.48
CCDC28AQ8IWP9 SNORA33.1-201ENST00000364957 130 ntBASIC-0.45□□□□□ -2.48
CCDC28AQ8IWP9 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.45□□□□□ -2.48
CCDC28AQ8IWP9 MIR6739-201ENST00000622461 75 ntBASIC-0.45□□□□□ -2.48
CCDC28AQ8IWP9 AL391099.1-201ENST00000624635 187 ntBASIC-0.45□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.46□□□□□ -2.48
CCDC28AQ8IWP9 SNORA8.1-201ENST00000384250 140 ntBASIC-0.46□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms