Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SNORA32.1-201ENST00000364514 115 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-302P-201ENST00000365249 107 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 SNORD114-12-201ENST00000365400 75 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 SNORD4A-201ENST00000459174 72 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-752P-201ENST00000516376 102 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 AP000676.1-201ENST00000533307 52 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 MIR6509-201ENST00000614603 85 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 AC006160.2-201ENST00000637708 154 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-340P-201ENST00000364005 107 ntBASIC-0.26□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-260P-201ENST00000384092 107 ntBASIC-0.26□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-557P-201ENST00000516842 110 ntBASIC-0.26□□□□□ -2.45
CCDC28AQ8IWP9 YWHAEP3-201ENST00000582767 121 ntBASIC-0.26□□□□□ -2.45
CCDC28AQ8IWP9 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.27□□□□□ -2.45
CCDC28AQ8IWP9 Y_RNA.205-201ENST00000364128 113 ntBASIC-0.27□□□□□ -2.45
CCDC28AQ8IWP9 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.27□□□□□ -2.45
CCDC28AQ8IWP9 AC021146.9-201ENST00000512503 156 ntBASIC-0.27□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-294P-201ENST00000364999 102 ntBASIC-0.28□□□□□ -2.45
CCDC28AQ8IWP9 Y_RNA.369-201ENST00000365568 117 ntBASIC-0.28□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-455P-201ENST00000384681 107 ntBASIC-0.28□□□□□ -2.45
CCDC28AQ8IWP9 RNA5SP480-201ENST00000516840 109 ntBASIC-0.28□□□□□ -2.45
CCDC28AQ8IWP9 MIR5582-201ENST00000579697 68 ntBASIC-0.28□□□□□ -2.45
CCDC28AQ8IWP9 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.29□□□□□ -2.46
CCDC28AQ8IWP9 MIR4263-201ENST00000584745 83 ntBASIC-0.29□□□□□ -2.46
CCDC28AQ8IWP9 MIR3666-201ENST00000607845 111 ntBASIC-0.29□□□□□ -2.46
CCDC28AQ8IWP9 AC145423.2-201ENST00000610631 239 ntBASIC-0.29□□□□□ -2.46
CCDC28AQ8IWP9 Y_RNA.115-201ENST00000363272 98 ntBASIC-0.3□□□□□ -2.46
CCDC28AQ8IWP9 MIR7-2-201ENST00000384970 110 ntBASIC-0.3□□□□□ -2.46
CCDC28AQ8IWP9 SNORA40.17-201ENST00000517256 115 ntBASIC-0.3□□□□□ -2.46
CCDC28AQ8IWP9 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.3□□□□□ -2.46
CCDC28AQ8IWP9 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 MIR655-201ENST00000362159 97 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 SNORA2.1-201ENST00000363089 137 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 RNU6-129P-201ENST00000391022 107 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 MIR5588-201ENST00000581890 63 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 MIR3657-201ENST00000584818 117 ntBASIC-0.31□□□□□ -2.46
CCDC28AQ8IWP9 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.32□□□□□ -2.46
CCDC28AQ8IWP9 RNU6-686P-201ENST00000364839 107 ntBASIC-0.32□□□□□ -2.46
CCDC28AQ8IWP9 RNU6-900P-201ENST00000384498 102 ntBASIC-0.32□□□□□ -2.46
CCDC28AQ8IWP9 MIR203A-201ENST00000384836 110 ntBASIC-0.32□□□□□ -2.46
CCDC28AQ8IWP9 AL109933.3-201ENST00000619095 188 ntBASIC-0.32□□□□□ -2.46
CCDC28AQ8IWP9 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.32□□□□□ -2.46
CCDC28AQ8IWP9 MIR9-2-201ENST00000384838 87 ntBASIC-0.33□□□□□ -2.46
CCDC28AQ8IWP9 MIR450A2-201ENST00000385022 100 ntBASIC-0.33□□□□□ -2.46
CCDC28AQ8IWP9 RNA5SP170-201ENST00000517150 101 ntBASIC-0.34□□□□□ -2.46
CCDC28AQ8IWP9 RNU6-502P-201ENST00000362419 108 ntBASIC-0.35□□□□□ -2.47
CCDC28AQ8IWP9 RNA5SP457-201ENST00000363657 124 ntBASIC-0.35□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-979P-201ENST00000383896 107 ntBASIC-0.35□□□□□ -2.47
CCDC28AQ8IWP9 snoU13.13-201ENST00000458842 104 ntBASIC-0.35□□□□□ -2.47
CCDC28AQ8IWP9 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.35□□□□□ -2.47
CCDC28AQ8IWP9 RNA5SP147-201ENST00000516493 109 ntBASIC-0.35□□□□□ -2.47
CCDC28AQ8IWP9 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.36□□□□□ -2.47
CCDC28AQ8IWP9 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.36□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-303P-201ENST00000517091 106 ntBASIC-0.36□□□□□ -2.47
CCDC28AQ8IWP9 MIR6773-201ENST00000612812 74 ntBASIC-0.36□□□□□ -2.47
CCDC28AQ8IWP9 MIR2909-201ENST00000617113 69 ntBASIC-0.36□□□□□ -2.47
CCDC28AQ8IWP9 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.37□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-380P-201ENST00000410207 107 ntBASIC-0.37□□□□□ -2.47
CCDC28AQ8IWP9 RNU7-55P-201ENST00000459426 62 ntBASIC-0.37□□□□□ -2.47
CCDC28AQ8IWP9 U6.96-201ENST00000636425 70 ntBASIC-0.37□□□□□ -2.47
CCDC28AQ8IWP9 MIR494-201ENST00000349529 81 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-1298P-201ENST00000362456 101 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-478P-201ENST00000363904 110 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 Y_RNA.540-201ENST00000384638 111 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 MIR214-201ENST00000385214 110 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 RNA5SP300-201ENST00000391197 107 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 AC022137.1-201ENST00000483735 151 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 MIR7111-201ENST00000619751 72 ntBASIC-0.38□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-242P-201ENST00000384359 107 ntBASIC-0.39□□□□□ -2.47
CCDC28AQ8IWP9 RNU7-171P-201ENST00000459581 62 ntBASIC-0.39□□□□□ -2.47
CCDC28AQ8IWP9 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.39□□□□□ -2.47
CCDC28AQ8IWP9 RNU6-901P-201ENST00000384593 106 ntBASIC-0.4□□□□□ -2.47
CCDC28AQ8IWP9 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.41□□□□□ -2.48
CCDC28AQ8IWP9 AL590491.3-201ENST00000610731 82 ntBASIC-0.41□□□□□ -2.48
CCDC28AQ8IWP9 MIR6779-201ENST00000617283 64 ntBASIC-0.41□□□□□ -2.48
CCDC28AQ8IWP9 MIR4788-201ENST00000639104 80 ntBASIC-0.41□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-315P-201ENST00000362666 107 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-820P-201ENST00000384273 107 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 MIR329-2-201ENST00000385029 84 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 MIRLET7B-201ENST00000385140 83 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 RNA5SP66-201ENST00000517178 101 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 MIR1297-201ENST00000637311 77 ntBASIC-0.42□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-973P-201ENST00000364690 107 ntBASIC-0.43□□□□□ -2.48
CCDC28AQ8IWP9 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.43□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.43□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-337P-201ENST00000391243 106 ntBASIC-0.43□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-807P-201ENST00000516805 107 ntBASIC-0.43□□□□□ -2.48
CCDC28AQ8IWP9 MIR521-2-201ENST00000384818 87 ntBASIC-0.44□□□□□ -2.48
CCDC28AQ8IWP9 AC074348.1-201ENST00000426503 132 ntBASIC-0.44□□□□□ -2.48
CCDC28AQ8IWP9 snoR1.1-201ENST00000628177 80 ntBASIC-0.44□□□□□ -2.48
CCDC28AQ8IWP9 SNORA33.1-201ENST00000364957 130 ntBASIC-0.45□□□□□ -2.48
CCDC28AQ8IWP9 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.45□□□□□ -2.48
CCDC28AQ8IWP9 MIR6739-201ENST00000622461 75 ntBASIC-0.45□□□□□ -2.48
CCDC28AQ8IWP9 AL391099.1-201ENST00000624635 187 ntBASIC-0.45□□□□□ -2.48
CCDC28AQ8IWP9 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.46□□□□□ -2.48
CCDC28AQ8IWP9 SNORA8.1-201ENST00000384250 140 ntBASIC-0.46□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 215.8 ms