Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SNORD114-26-201ENST00000363543 72 ntBASIC0.88□□□□□ -2.27
PCDH1Q08174 RNU6-1162P-201ENST00000384443 104 ntBASIC0.88□□□□□ -2.27
PCDH1Q08174 MIR518A1-201ENST00000385068 85 ntBASIC0.88□□□□□ -2.27
PCDH1Q08174 SNORA63.6-201ENST00000364921 119 ntBASIC0.87□□□□□ -2.27
PCDH1Q08174 SNORA2A-201ENST00000383885 135 ntBASIC0.87□□□□□ -2.27
PCDH1Q08174 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
PCDH1Q08174 Y_RNA.125-201ENST00000363371 111 ntBASIC0.86□□□□□ -2.27
PCDH1Q08174 MIR582-201ENST00000365731 98 ntBASIC0.86□□□□□ -2.27
PCDH1Q08174 MIR521-2-201ENST00000384818 87 ntBASIC0.86□□□□□ -2.27
PCDH1Q08174 MIR4511-201ENST00000582784 87 ntBASIC0.86□□□□□ -2.27
PCDH1Q08174 U7.6-201ENST00000610841 64 ntBASIC0.86□□□□□ -2.27
PCDH1Q08174 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.86□□□□□ -2.27
PCDH1Q08174 AC103706.3-201ENST00000636297 85 ntBASIC0.86□□□□□ -2.27
PCDH1Q08174 SNORA15B-2-201ENST00000384058 135 ntBASIC0.85□□□□□ -2.27
PCDH1Q08174 SNORA15B-1-201ENST00000384334 135 ntBASIC0.85□□□□□ -2.27
PCDH1Q08174 MIR548E-201ENST00000408287 88 ntBASIC0.85□□□□□ -2.27
PCDH1Q08174 RNU4-54P-201ENST00000516428 129 ntBASIC0.85□□□□□ -2.27
PCDH1Q08174 RNU6-229P-201ENST00000516614 102 ntBASIC0.85□□□□□ -2.27
PCDH1Q08174 Y_RNA.375-201ENST00000365625 101 ntBASIC0.84□□□□□ -2.27
PCDH1Q08174 Y_RNA.423-201ENST00000384057 113 ntBASIC0.84□□□□□ -2.27
PCDH1Q08174 Y_RNA.633-201ENST00000459107 95 ntBASIC0.84□□□□□ -2.27
PCDH1Q08174 RNU6-351P-201ENST00000516097 100 ntBASIC0.84□□□□□ -2.27
PCDH1Q08174 MIR146A-201ENST00000385201 99 ntBASIC0.83□□□□□ -2.28
PCDH1Q08174 MIR373-201ENST00000362273 69 ntBASIC0.82□□□□□ -2.28
PCDH1Q08174 AC098934.3-201ENST00000430450 190 ntBASIC0.82□□□□□ -2.28
PCDH1Q08174 AL157398.1-201ENST00000452981 186 ntBASIC0.82□□□□□ -2.28
PCDH1Q08174 RNU6-848P-201ENST00000515948 107 ntBASIC0.81□□□□□ -2.28
PCDH1Q08174 RNU6-617P-201ENST00000516147 107 ntBASIC0.81□□□□□ -2.28
PCDH1Q08174 RNU6-473P-201ENST00000516164 107 ntBASIC0.81□□□□□ -2.28
PCDH1Q08174 RNU6-1049P-201ENST00000516414 107 ntBASIC0.81□□□□□ -2.28
PCDH1Q08174 RNU6-1089P-201ENST00000516473 104 ntBASIC0.81□□□□□ -2.28
PCDH1Q08174 MIR5000-201ENST00000577717 103 ntBASIC0.81□□□□□ -2.28
PCDH1Q08174 MIR4698-201ENST00000577795 80 ntBASIC0.81□□□□□ -2.28
PCDH1Q08174 MIR4653-201ENST00000585107 83 ntBASIC0.81□□□□□ -2.28
PCDH1Q08174 MIR6755-201ENST00000619993 66 ntBASIC0.81□□□□□ -2.28
PCDH1Q08174 MIR20A-201ENST00000362279 71 ntBASIC0.8□□□□□ -2.28
PCDH1Q08174 MIR216A-201ENST00000385063 110 ntBASIC0.8□□□□□ -2.28
PCDH1Q08174 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.8□□□□□ -2.28
PCDH1Q08174 AC244090.1-201ENST00000441884 93 ntBASIC0.8□□□□□ -2.28
PCDH1Q08174 RNU6-542P-201ENST00000516405 103 ntBASIC0.8□□□□□ -2.28
PCDH1Q08174 MIR3973-201ENST00000579824 107 ntBASIC0.8□□□□□ -2.28
PCDH1Q08174 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.79□□□□□ -2.28
PCDH1Q08174 RNA5SP215-201ENST00000363440 122 ntBASIC0.79□□□□□ -2.28
PCDH1Q08174 SNORD114-2-201ENST00000363953 78 ntBASIC0.79□□□□□ -2.28
PCDH1Q08174 SNORA33.1-201ENST00000364957 130 ntBASIC0.79□□□□□ -2.28
PCDH1Q08174 RNU6-1232P-201ENST00000516299 86 ntBASIC0.79□□□□□ -2.28
PCDH1Q08174 MIR516B1-201ENST00000385211 90 ntBASIC0.78□□□□□ -2.28
PCDH1Q08174 SNORD114-29-201ENST00000364819 70 ntBASIC0.77□□□□□ -2.29
PCDH1Q08174 RNU6-945P-201ENST00000383947 107 ntBASIC0.77□□□□□ -2.29
PCDH1Q08174 MIR9-2-201ENST00000384838 87 ntBASIC0.77□□□□□ -2.29
PCDH1Q08174 MIR760-201ENST00000390220 80 ntBASIC0.77□□□□□ -2.29
PCDH1Q08174 CYP3A137P-201ENST00000562436 69 ntBASIC0.77□□□□□ -2.29
PCDH1Q08174 RN7SL793P-201ENST00000583259 296 ntBASIC0.77□□□□□ -2.29
PCDH1Q08174 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.77□□□□□ -2.29
PCDH1Q08174 MIR548C-201ENST00000384815 97 ntBASIC0.76□□□□□ -2.29
PCDH1Q08174 MIR501-201ENST00000390204 84 ntBASIC0.76□□□□□ -2.29
PCDH1Q08174 MIR4677-201ENST00000584153 80 ntBASIC0.76□□□□□ -2.29
PCDH1Q08174 RNA5SP299-201ENST00000391203 116 ntBASIC0.75□□□□□ -2.29
PCDH1Q08174 RNU6-863P-201ENST00000515989 104 ntBASIC0.75□□□□□ -2.29
PCDH1Q08174 RNU7-188P-201ENST00000517063 64 ntBASIC0.74□□□□□ -2.29
PCDH1Q08174 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.74□□□□□ -2.29
PCDH1Q08174 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
PCDH1Q08174 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
PCDH1Q08174 AC110620.1-201ENST00000416042 228 ntBASIC0.73□□□□□ -2.29
PCDH1Q08174 SNORD2-201ENST00000459163 69 ntBASIC0.73□□□□□ -2.29
PCDH1Q08174 MIR4714-201ENST00000580728 77 ntBASIC0.73□□□□□ -2.29
PCDH1Q08174 MIR548AD-201ENST00000584780 82 ntBASIC0.73□□□□□ -2.29
PCDH1Q08174 U2.7-201ENST00000619197 100 ntBASIC0.73□□□□□ -2.29
PCDH1Q08174 MIR6866-201ENST00000638146 69 ntBASIC0.73□□□□□ -2.29
PCDH1Q08174 Y_RNA.30-201ENST00000362572 97 ntBASIC0.72□□□□□ -2.29
PCDH1Q08174 RNU6-302P-201ENST00000365249 107 ntBASIC0.72□□□□□ -2.29
PCDH1Q08174 RNA5SP128-201ENST00000365305 116 ntBASIC0.72□□□□□ -2.29
PCDH1Q08174 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.72□□□□□ -2.29
PCDH1Q08174 U6.96-201ENST00000636425 70 ntBASIC0.72□□□□□ -2.29
PCDH1Q08174 SNORD44.1-201ENST00000363202 61 ntBASIC0.71□□□□□ -2.3
PCDH1Q08174 Y_RNA.374-201ENST00000365606 101 ntBASIC0.71□□□□□ -2.3
PCDH1Q08174 SCARNA21.1-201ENST00000515996 128 ntBASIC0.71□□□□□ -2.3
PCDH1Q08174 MIR548V-201ENST00000584165 80 ntBASIC0.71□□□□□ -2.3
PCDH1Q08174 AC243829.6-201ENST00000612652 106 ntBASIC0.71□□□□□ -2.3
PCDH1Q08174 AC084368.1-201ENST00000620935 65 ntBASIC0.71□□□□□ -2.3
PCDH1Q08174 RNU6-669P-201ENST00000365575 107 ntBASIC0.7□□□□□ -2.3
PCDH1Q08174 RNU7-129P-201ENST00000516128 62 ntBASIC0.69□□□□□ -2.3
PCDH1Q08174 MIR6835-201ENST00000621552 64 ntBASIC0.69□□□□□ -2.3
PCDH1Q08174 MIR193B-201ENST00000384907 83 ntBASIC0.68□□□□□ -2.3
PCDH1Q08174 MIR517B-201ENST00000385102 67 ntBASIC0.68□□□□□ -2.3
PCDH1Q08174 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
PCDH1Q08174 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.68□□□□□ -2.3
PCDH1Q08174 RNU7-174P-201ENST00000516248 59 ntBASIC0.67□□□□□ -2.3
PCDH1Q08174 RNU6-175P-201ENST00000516896 107 ntBASIC0.67□□□□□ -2.3
PCDH1Q08174 CYP3A54P-201ENST00000566950 75 ntBASIC0.67□□□□□ -2.3
PCDH1Q08174 MIR499B-201ENST00000636498 73 ntBASIC0.67□□□□□ -2.3
PCDH1Q08174 SNORA25.5-201ENST00000363782 126 ntBASIC0.66□□□□□ -2.3
PCDH1Q08174 MIR508-201ENST00000384857 115 ntBASIC0.66□□□□□ -2.3
PCDH1Q08174 SNORA68.3-201ENST00000515906 83 ntBASIC0.66□□□□□ -2.3
PCDH1Q08174 RNA5SP121-201ENST00000516537 101 ntBASIC0.66□□□□□ -2.3
PCDH1Q08174 RNU6-698P-201ENST00000363523 107 ntBASIC0.65□□□□□ -2.31
PCDH1Q08174 RNU6-34P-201ENST00000364874 107 ntBASIC0.65□□□□□ -2.31
PCDH1Q08174 MIR630-201ENST00000384957 97 ntBASIC0.65□□□□□ -2.31
PCDH1Q08174 SNORA49-201ENST00000386157 136 ntBASIC0.65□□□□□ -2.31
PCDH1Q08174 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 269.6 ms