Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNA5SP192-201ENST00000364404 120 ntBASIC0.98□□□□□ -2.25
SOX4Q06945 MIR140-201ENST00000385282 100 ntBASIC0.98□□□□□ -2.25
SOX4Q06945 MIR548E-201ENST00000408287 88 ntBASIC0.98□□□□□ -2.25
SOX4Q06945 AC069271.1-201ENST00000445577 156 ntBASIC0.98□□□□□ -2.25
SOX4Q06945 MIR548V-201ENST00000584165 80 ntBASIC0.98□□□□□ -2.25
SOX4Q06945 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.97□□□□□ -2.25
SOX4Q06945 Y_RNA.68-201ENST00000362881 102 ntBASIC0.97□□□□□ -2.25
SOX4Q06945 SNORA33.1-201ENST00000364957 130 ntBASIC0.97□□□□□ -2.25
SOX4Q06945 RNU6-302P-201ENST00000365249 107 ntBASIC0.97□□□□□ -2.25
SOX4Q06945 MIR608-201ENST00000384820 100 ntBASIC0.97□□□□□ -2.25
SOX4Q06945 MIR633-201ENST00000384821 98 ntBASIC0.97□□□□□ -2.25
SOX4Q06945 MIR548J-201ENST00000408833 112 ntBASIC0.97□□□□□ -2.25
SOX4Q06945 HMGN2P22-201ENST00000427588 175 ntBASIC0.97□□□□□ -2.25
SOX4Q06945 AC211469.2-201ENST00000605461 205 ntBASIC0.97□□□□□ -2.25
SOX4Q06945 RNU1-29P-201ENST00000606574 126 ntBASIC0.97□□□□□ -2.25
SOX4Q06945 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.97□□□□□ -2.25
SOX4Q06945 Y_RNA.433-201ENST00000384089 102 ntBASIC0.96□□□□□ -2.26
SOX4Q06945 MIR5706-201ENST00000579841 80 ntBASIC0.96□□□□□ -2.26
SOX4Q06945 SNORA25.18-201ENST00000607153 114 ntBASIC0.96□□□□□ -2.26
SOX4Q06945 MIR6788-201ENST00000618842 66 ntBASIC0.96□□□□□ -2.26
SOX4Q06945 MIR598-201ENST00000384868 97 ntBASIC0.95□□□□□ -2.26
SOX4Q06945 ACA64.5-201ENST00000516207 127 ntBASIC0.95□□□□□ -2.26
SOX4Q06945 MIR6857-201ENST00000613267 93 ntBASIC0.95□□□□□ -2.26
SOX4Q06945 Y_RNA.30-201ENST00000362572 97 ntBASIC0.94□□□□□ -2.26
SOX4Q06945 Y_RNA.125-201ENST00000363371 111 ntBASIC0.94□□□□□ -2.26
SOX4Q06945 RNU6-940P-201ENST00000363433 104 ntBASIC0.94□□□□□ -2.26
SOX4Q06945 MIR466-201ENST00000580653 84 ntBASIC0.94□□□□□ -2.26
SOX4Q06945 AC103810.9-201ENST00000606688 112 ntBASIC0.94□□□□□ -2.26
SOX4Q06945 U2.7-201ENST00000619197 100 ntBASIC0.94□□□□□ -2.26
SOX4Q06945 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
SOX4Q06945 SNORD118-201ENST00000363593 134 ntBASIC0.93□□□□□ -2.26
SOX4Q06945 MIR630-201ENST00000384957 97 ntBASIC0.93□□□□□ -2.26
SOX4Q06945 MIR517B-201ENST00000385102 67 ntBASIC0.92□□□□□ -2.26
SOX4Q06945 SNORA40.8-201ENST00000411034 126 ntBASIC0.92□□□□□ -2.26
SOX4Q06945 MIR151B-201ENST00000584249 96 ntBASIC0.92□□□□□ -2.26
SOX4Q06945 RNU6-92P-201ENST00000605893 104 ntBASIC0.92□□□□□ -2.26
SOX4Q06945 PVT1_3.1-201ENST00000620853 95 ntBASIC0.92□□□□□ -2.26
SOX4Q06945 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.92□□□□□ -2.26
SOX4Q06945 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
SOX4Q06945 AC079150.2-201ENST00000443733 78 ntBASIC0.91□□□□□ -2.26
SOX4Q06945 RNU7-174P-201ENST00000516248 59 ntBASIC0.91□□□□□ -2.26
SOX4Q06945 AC022709.1-201ENST00000615967 87 ntBASIC0.91□□□□□ -2.26
SOX4Q06945 SNORA2A-201ENST00000383885 135 ntBASIC0.9□□□□□ -2.27
SOX4Q06945 CYP3A137P-201ENST00000562436 69 ntBASIC0.9□□□□□ -2.27
SOX4Q06945 MIR20A-201ENST00000362279 71 ntBASIC0.89□□□□□ -2.27
SOX4Q06945 RNU6-1079P-201ENST00000362861 110 ntBASIC0.89□□□□□ -2.27
SOX4Q06945 RNU6-698P-201ENST00000363523 107 ntBASIC0.89□□□□□ -2.27
SOX4Q06945 RNU6-34P-201ENST00000364874 107 ntBASIC0.89□□□□□ -2.27
SOX4Q06945 RNU6-987P-201ENST00000384759 104 ntBASIC0.89□□□□□ -2.27
SOX4Q06945 MIR516B1-201ENST00000385211 90 ntBASIC0.89□□□□□ -2.27
SOX4Q06945 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.89□□□□□ -2.27
SOX4Q06945 RNU4-37P-201ENST00000410214 84 ntBASIC0.89□□□□□ -2.27
SOX4Q06945 AC244090.1-201ENST00000441884 93 ntBASIC0.89□□□□□ -2.27
SOX4Q06945 RPL39P28-201ENST00000465655 155 ntBASIC0.89□□□□□ -2.27
SOX4Q06945 RNU6-229P-201ENST00000516614 102 ntBASIC0.89□□□□□ -2.27
SOX4Q06945 U6.96-201ENST00000636425 70 ntBASIC0.89□□□□□ -2.27
SOX4Q06945 Y_RNA.423-201ENST00000384057 113 ntBASIC0.88□□□□□ -2.27
SOX4Q06945 SNORA75.1-201ENST00000391130 148 ntBASIC0.88□□□□□ -2.27
SOX4Q06945 SNORD71-201ENST00000411292 86 ntBASIC0.88□□□□□ -2.27
SOX4Q06945 RNU6-1223P-201ENST00000517124 104 ntBASIC0.88□□□□□ -2.27
SOX4Q06945 CYP3A54P-201ENST00000566950 75 ntBASIC0.88□□□□□ -2.27
SOX4Q06945 U7.6-201ENST00000610841 64 ntBASIC0.88□□□□□ -2.27
SOX4Q06945 RNU6-110P-201ENST00000384508 104 ntBASIC0.87□□□□□ -2.27
SOX4Q06945 MIR518A1-201ENST00000385068 85 ntBASIC0.87□□□□□ -2.27
SOX4Q06945 SNORD113-2-201ENST00000391082 72 ntBASIC0.87□□□□□ -2.27
SOX4Q06945 HAR1A.1-201ENST00000459583 118 ntBASIC0.87□□□□□ -2.27
SOX4Q06945 RNU6-1232P-201ENST00000516299 86 ntBASIC0.87□□□□□ -2.27
SOX4Q06945 RNU4-54P-201ENST00000516428 129 ntBASIC0.87□□□□□ -2.27
SOX4Q06945 RNU6-122P-201ENST00000516818 107 ntBASIC0.87□□□□□ -2.27
SOX4Q06945 AC243829.6-201ENST00000612652 106 ntBASIC0.87□□□□□ -2.27
SOX4Q06945 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
SOX4Q06945 RNA5SP436-201ENST00000516020 115 ntBASIC0.86□□□□□ -2.27
SOX4Q06945 MIR5000-201ENST00000577717 103 ntBASIC0.86□□□□□ -2.27
SOX4Q06945 SNORD60.1-201ENST00000362451 73 ntBASIC0.85□□□□□ -2.27
SOX4Q06945 RNU6-829P-201ENST00000363700 112 ntBASIC0.85□□□□□ -2.27
SOX4Q06945 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.85□□□□□ -2.27
SOX4Q06945 RNU6-351P-201ENST00000516097 100 ntBASIC0.85□□□□□ -2.27
SOX4Q06945 AL590095.2-201ENST00000604136 117 ntBASIC0.85□□□□□ -2.27
SOX4Q06945 U4.4-201ENST00000620626 117 ntBASIC0.85□□□□□ -2.27
SOX4Q06945 SNORD114-2-201ENST00000363953 78 ntBASIC0.84□□□□□ -2.27
SOX4Q06945 SNORD114-29-201ENST00000364819 70 ntBASIC0.84□□□□□ -2.27
SOX4Q06945 RNU6-614P-201ENST00000384369 107 ntBASIC0.84□□□□□ -2.27
SOX4Q06945 MIR3938-201ENST00000582157 103 ntBASIC0.84□□□□□ -2.27
SOX4Q06945 U6.59-201ENST00000615686 107 ntBASIC0.84□□□□□ -2.27
SOX4Q06945 PSMC1P5-201ENST00000512850 177 ntBASIC0.83□□□□□ -2.28
SOX4Q06945 RNU7-188P-201ENST00000517063 64 ntBASIC0.83□□□□□ -2.28
SOX4Q06945 MIR4714-201ENST00000580728 77 ntBASIC0.83□□□□□ -2.28
SOX4Q06945 RN7SL793P-201ENST00000583259 296 ntBASIC0.83□□□□□ -2.28
SOX4Q06945 MIR6755-201ENST00000619993 66 ntBASIC0.83□□□□□ -2.28
SOX4Q06945 AC090617.8-201ENST00000623339 167 ntBASIC0.83□□□□□ -2.28
SOX4Q06945 RNA5SP457-201ENST00000363657 124 ntBASIC0.82□□□□□ -2.28
SOX4Q06945 RNA5SP476-201ENST00000516613 103 ntBASIC0.82□□□□□ -2.28
SOX4Q06945 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
SOX4Q06945 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.81□□□□□ -2.28
SOX4Q06945 Y_RNA.246-201ENST00000364495 108 ntBASIC0.81□□□□□ -2.28
SOX4Q06945 AC098934.3-201ENST00000430450 190 ntBASIC0.81□□□□□ -2.28
SOX4Q06945 SNORD2-201ENST00000459163 69 ntBASIC0.81□□□□□ -2.28
SOX4Q06945 RNU6-848P-201ENST00000515948 107 ntBASIC0.81□□□□□ -2.28
SOX4Q06945 RNU6-617P-201ENST00000516147 107 ntBASIC0.81□□□□□ -2.28
SOX4Q06945 RNU6-473P-201ENST00000516164 107 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 217.3 ms