Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.03□□□□□ -2.41
HOXA1P49639 RNA5SP147-201ENST00000516493 109 ntBASIC-0.03□□□□□ -2.41
HOXA1P49639 AC006254.2-201ENST00000603259 279 ntBASIC-0.03□□□□□ -2.41
HOXA1P49639 AC062037.1-201ENST00000605302 128 ntBASIC-0.03□□□□□ -2.41
HOXA1P49639 MIR655-201ENST00000362159 97 ntBASIC-0.04□□□□□ -2.42
HOXA1P49639 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.04□□□□□ -2.42
HOXA1P49639 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.04□□□□□ -2.42
HOXA1P49639 SNORD114-4-201ENST00000363962 75 ntBASIC-0.04□□□□□ -2.42
HOXA1P49639 AC244090.1-201ENST00000441884 93 ntBASIC-0.04□□□□□ -2.42
HOXA1P49639 RNU7-24P-201ENST00000458867 62 ntBASIC-0.04□□□□□ -2.42
HOXA1P49639 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.04□□□□□ -2.42
HOXA1P49639 MIR5190-201ENST00000581537 80 ntBASIC-0.04□□□□□ -2.42
HOXA1P49639 AC090617.8-201ENST00000623339 167 ntBASIC-0.04□□□□□ -2.42
HOXA1P49639 RNU6-340P-201ENST00000364005 107 ntBASIC-0.05□□□□□ -2.42
HOXA1P49639 RNU6-979P-201ENST00000383896 107 ntBASIC-0.05□□□□□ -2.42
HOXA1P49639 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.05□□□□□ -2.42
HOXA1P49639 MIR450A2-201ENST00000385022 100 ntBASIC-0.05□□□□□ -2.42
HOXA1P49639 CR383656.4-201ENST00000546909 122 ntBASIC-0.05□□□□□ -2.42
HOXA1P49639 MIR4743-201ENST00000584576 69 ntBASIC-0.05□□□□□ -2.42
HOXA1P49639 MIR6509-201ENST00000614603 85 ntBASIC-0.05□□□□□ -2.42
HOXA1P49639 SNORD114-11-201ENST00000363738 75 ntBASIC-0.06□□□□□ -2.42
HOXA1P49639 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.06□□□□□ -2.42
HOXA1P49639 AL691482.2-201ENST00000457453 84 ntBASIC-0.06□□□□□ -2.42
HOXA1P49639 RNU6-274P-201ENST00000459566 107 ntBASIC-0.06□□□□□ -2.42
HOXA1P49639 AP000676.1-201ENST00000533307 52 ntBASIC-0.06□□□□□ -2.42
HOXA1P49639 SNORD56B-201ENST00000384713 71 ntBASIC-0.07□□□□□ -2.42
HOXA1P49639 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.07□□□□□ -2.42
HOXA1P49639 RNA5SP169-201ENST00000517268 117 ntBASIC-0.07□□□□□ -2.42
HOXA1P49639 RNA5SP257-201ENST00000363023 116 ntBASIC-0.08□□□□□ -2.42
HOXA1P49639 RNA5SP98-201ENST00000363158 137 ntBASIC-0.08□□□□□ -2.42
HOXA1P49639 SNORD73B-201ENST00000364394 72 ntBASIC-0.08□□□□□ -2.42
HOXA1P49639 MIR9-2-201ENST00000384838 87 ntBASIC-0.08□□□□□ -2.42
HOXA1P49639 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.08□□□□□ -2.42
HOXA1P49639 MIR5704-201ENST00000584029 77 ntBASIC-0.08□□□□□ -2.42
HOXA1P49639 MIR8068-201ENST00000618032 68 ntBASIC-0.08□□□□□ -2.42
HOXA1P49639 RNU6-330P-201ENST00000363015 107 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 SNORA32.1-201ENST00000364514 115 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 RNU6-302P-201ENST00000365249 107 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 RNU6-260P-201ENST00000384092 107 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 RNU6-129P-201ENST00000391022 107 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 RNU6-592P-201ENST00000411333 103 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 AC021146.9-201ENST00000512503 156 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 MIR3657-201ENST00000584818 117 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 AL590491.3-201ENST00000610731 82 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 MIR2909-201ENST00000617113 69 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 uc_338.36-201ENST00000622331 158 ntBASIC-0.09□□□□□ -2.42
HOXA1P49639 MIR148A-201ENST00000362215 68 ntBASIC-0.1□□□□□ -2.43
HOXA1P49639 Y_RNA.43-201ENST00000362670 111 ntBASIC-0.1□□□□□ -2.43
HOXA1P49639 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.1□□□□□ -2.43
HOXA1P49639 SNORA63.6-201ENST00000364921 119 ntBASIC-0.1□□□□□ -2.43
HOXA1P49639 RNU6-455P-201ENST00000384681 107 ntBASIC-0.1□□□□□ -2.43
HOXA1P49639 RNU6-337P-201ENST00000391243 106 ntBASIC-0.1□□□□□ -2.43
HOXA1P49639 YWHAEP3-201ENST00000582767 121 ntBASIC-0.1□□□□□ -2.43
HOXA1P49639 MIR4484-201ENST00000582855 83 ntBASIC-0.1□□□□□ -2.43
HOXA1P49639 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.1□□□□□ -2.43
HOXA1P49639 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.11□□□□□ -2.43
HOXA1P49639 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.11□□□□□ -2.43
HOXA1P49639 SNORD49B-201ENST00000365172 72 ntBASIC-0.11□□□□□ -2.43
HOXA1P49639 RNU6-557P-201ENST00000516842 110 ntBASIC-0.11□□□□□ -2.43
HOXA1P49639 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.12□□□□□ -2.43
HOXA1P49639 RNU6-502P-201ENST00000362419 108 ntBASIC-0.12□□□□□ -2.43
HOXA1P49639 RNU6-686P-201ENST00000364839 107 ntBASIC-0.12□□□□□ -2.43
HOXA1P49639 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.12□□□□□ -2.43
HOXA1P49639 SNORD114-12-201ENST00000365400 75 ntBASIC-0.12□□□□□ -2.43
HOXA1P49639 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.12□□□□□ -2.43
HOXA1P49639 AL445193.1-201ENST00000441183 141 ntBASIC-0.12□□□□□ -2.43
HOXA1P49639 RNU7-171P-201ENST00000459581 62 ntBASIC-0.12□□□□□ -2.43
HOXA1P49639 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.12□□□□□ -2.43
HOXA1P49639 MIR548AG1-201ENST00000579932 66 ntBASIC-0.12□□□□□ -2.43
HOXA1P49639 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.12□□□□□ -2.43
HOXA1P49639 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.13□□□□□ -2.43
HOXA1P49639 SNORD115-25-201ENST00000362619 82 ntBASIC-0.13□□□□□ -2.43
HOXA1P49639 SNORA33.1-201ENST00000364957 130 ntBASIC-0.14□□□□□ -2.43
HOXA1P49639 Y_RNA.388-201ENST00000383919 113 ntBASIC-0.14□□□□□ -2.43
HOXA1P49639 RNU6-242P-201ENST00000384359 107 ntBASIC-0.14□□□□□ -2.43
HOXA1P49639 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.14□□□□□ -2.43
HOXA1P49639 SNORD38.3-201ENST00000516599 73 ntBASIC-0.14□□□□□ -2.43
HOXA1P49639 MIR6773-201ENST00000612812 74 ntBASIC-0.14□□□□□ -2.43
HOXA1P49639 MIR4679-1-201ENST00000637619 75 ntBASIC-0.14□□□□□ -2.43
HOXA1P49639 RNU6-681P-201ENST00000364012 104 ntBASIC-0.15□□□□□ -2.43
HOXA1P49639 MIRLET7B-201ENST00000385140 83 ntBASIC-0.15□□□□□ -2.43
HOXA1P49639 AC104692.1-201ENST00000472406 90 ntBASIC-0.15□□□□□ -2.43
HOXA1P49639 AC114755.3-201ENST00000481111 251 ntBASIC-0.15□□□□□ -2.43
HOXA1P49639 MIR4464-201ENST00000580818 92 ntBASIC-0.15□□□□□ -2.43
HOXA1P49639 MIR4436A-201ENST00000585278 85 ntBASIC-0.15□□□□□ -2.43
HOXA1P49639 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.15□□□□□ -2.43
HOXA1P49639 MIR1295B-201ENST00000636144 60 ntBASIC-0.15□□□□□ -2.43
HOXA1P49639 MIR4788-201ENST00000639104 80 ntBASIC-0.15□□□□□ -2.43
HOXA1P49639 SNORA2.1-201ENST00000363089 137 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 SNORD115-23-201ENST00000364461 82 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 RNU6-573P-201ENST00000383938 106 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 RNU6-787P-201ENST00000384032 107 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 RNU6-820P-201ENST00000384273 107 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 MIR329-2-201ENST00000385029 84 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 RNY4P29-201ENST00000410801 97 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.16□□□□□ -2.44
HOXA1P49639 SNORD4A-201ENST00000459174 72 ntBASIC-0.16□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 178.5 ms