Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 RNU6-499P-201ENST00000365615 107 ntBASIC0.84□□□□□ -2.27
LIMS1P48059 MIR608-201ENST00000384820 100 ntBASIC0.84□□□□□ -2.27
LIMS1P48059 HMGN2P22-201ENST00000427588 175 ntBASIC0.84□□□□□ -2.27
LIMS1P48059 snoU13.13-201ENST00000458842 104 ntBASIC0.84□□□□□ -2.27
LIMS1P48059 RPL39P28-201ENST00000465655 155 ntBASIC0.84□□□□□ -2.27
LIMS1P48059 SNORA15B-2-201ENST00000384058 135 ntBASIC0.83□□□□□ -2.28
LIMS1P48059 SNORA15B-1-201ENST00000384334 135 ntBASIC0.83□□□□□ -2.28
LIMS1P48059 MIR532-201ENST00000385025 91 ntBASIC0.83□□□□□ -2.28
LIMS1P48059 RNA5SP299-201ENST00000391203 116 ntBASIC0.83□□□□□ -2.28
LIMS1P48059 SNORD118-201ENST00000363593 134 ntBASIC0.82□□□□□ -2.28
LIMS1P48059 SNORA25.5-201ENST00000363782 126 ntBASIC0.82□□□□□ -2.28
LIMS1P48059 ACA64.5-201ENST00000516207 127 ntBASIC0.82□□□□□ -2.28
LIMS1P48059 SNORA36.2-201ENST00000384004 127 ntBASIC0.81□□□□□ -2.28
LIMS1P48059 AC069271.1-201ENST00000445577 156 ntBASIC0.81□□□□□ -2.28
LIMS1P48059 Y_RNA.125-201ENST00000363371 111 ntBASIC0.8□□□□□ -2.28
LIMS1P48059 SNORA33.1-201ENST00000364957 130 ntBASIC0.8□□□□□ -2.28
LIMS1P48059 CYP3A137P-201ENST00000562436 69 ntBASIC0.8□□□□□ -2.28
LIMS1P48059 SNORA25.18-201ENST00000607153 114 ntBASIC0.8□□□□□ -2.28
LIMS1P48059 U2.7-201ENST00000619197 100 ntBASIC0.8□□□□□ -2.28
LIMS1P48059 RNA5SP325-201ENST00000363756 130 ntBASIC0.79□□□□□ -2.28
LIMS1P48059 RNU6-302P-201ENST00000365249 107 ntBASIC0.79□□□□□ -2.28
LIMS1P48059 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
LIMS1P48059 SNORA40.8-201ENST00000411034 126 ntBASIC0.79□□□□□ -2.28
LIMS1P48059 RNU6-351P-201ENST00000516097 100 ntBASIC0.79□□□□□ -2.28
LIMS1P48059 RN7SL793P-201ENST00000583259 296 ntBASIC0.79□□□□□ -2.28
LIMS1P48059 uc_338.10-201ENST00000621872 182 ntBASIC0.79□□□□□ -2.28
LIMS1P48059 RNU6-110P-201ENST00000384508 104 ntBASIC0.78□□□□□ -2.28
LIMS1P48059 MIR216A-201ENST00000385063 110 ntBASIC0.78□□□□□ -2.28
LIMS1P48059 RNU7-174P-201ENST00000516248 59 ntBASIC0.78□□□□□ -2.28
LIMS1P48059 SNORD114-2-201ENST00000363953 78 ntBASIC0.77□□□□□ -2.29
LIMS1P48059 RNA5SP192-201ENST00000364404 120 ntBASIC0.77□□□□□ -2.29
LIMS1P48059 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.77□□□□□ -2.29
LIMS1P48059 AC079150.2-201ENST00000443733 78 ntBASIC0.77□□□□□ -2.29
LIMS1P48059 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.77□□□□□ -2.29
LIMS1P48059 MIR373-201ENST00000362273 69 ntBASIC0.76□□□□□ -2.29
LIMS1P48059 RNU6-940P-201ENST00000363433 104 ntBASIC0.76□□□□□ -2.29
LIMS1P48059 AC244090.1-201ENST00000441884 93 ntBASIC0.76□□□□□ -2.29
LIMS1P48059 RNU6-848P-201ENST00000515948 107 ntBASIC0.76□□□□□ -2.29
LIMS1P48059 RNU6-617P-201ENST00000516147 107 ntBASIC0.76□□□□□ -2.29
LIMS1P48059 RNU6-473P-201ENST00000516164 107 ntBASIC0.76□□□□□ -2.29
LIMS1P48059 RNU6-1049P-201ENST00000516414 107 ntBASIC0.76□□□□□ -2.29
LIMS1P48059 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.75□□□□□ -2.29
LIMS1P48059 MIR20A-201ENST00000362279 71 ntBASIC0.75□□□□□ -2.29
LIMS1P48059 RNU6-698P-201ENST00000363523 107 ntBASIC0.75□□□□□ -2.29
LIMS1P48059 RNU6-34P-201ENST00000364874 107 ntBASIC0.75□□□□□ -2.29
LIMS1P48059 MIR633-201ENST00000384821 98 ntBASIC0.75□□□□□ -2.29
LIMS1P48059 MIR518A1-201ENST00000385068 85 ntBASIC0.75□□□□□ -2.29
LIMS1P48059 MIR146A-201ENST00000385201 99 ntBASIC0.75□□□□□ -2.29
LIMS1P48059 RNU6-92P-201ENST00000605893 104 ntBASIC0.75□□□□□ -2.29
LIMS1P48059 SNORA2A-201ENST00000383885 135 ntBASIC0.74□□□□□ -2.29
LIMS1P48059 MIR516B1-201ENST00000385211 90 ntBASIC0.74□□□□□ -2.29
LIMS1P48059 MTND4LP19-201ENST00000403051 166 ntBASIC0.74□□□□□ -2.29
LIMS1P48059 RNU6-122P-201ENST00000516818 107 ntBASIC0.74□□□□□ -2.29
LIMS1P48059 AL590095.2-201ENST00000604136 117 ntBASIC0.74□□□□□ -2.29
LIMS1P48059 U7.6-201ENST00000610841 64 ntBASIC0.74□□□□□ -2.29
LIMS1P48059 MIR6755-201ENST00000619993 66 ntBASIC0.74□□□□□ -2.29
LIMS1P48059 MIR517B-201ENST00000385102 67 ntBASIC0.73□□□□□ -2.29
LIMS1P48059 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.73□□□□□ -2.29
LIMS1P48059 PSMC1P5-201ENST00000512850 177 ntBASIC0.73□□□□□ -2.29
LIMS1P48059 MIR548V-201ENST00000584165 80 ntBASIC0.73□□□□□ -2.29
LIMS1P48059 U4.4-201ENST00000620626 117 ntBASIC0.73□□□□□ -2.29
LIMS1P48059 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
LIMS1P48059 SNORD71-201ENST00000411292 86 ntBASIC0.72□□□□□ -2.29
LIMS1P48059 AC098934.3-201ENST00000430450 190 ntBASIC0.72□□□□□ -2.29
LIMS1P48059 RNU4-54P-201ENST00000516428 129 ntBASIC0.72□□□□□ -2.29
LIMS1P48059 MIR3973-201ENST00000579824 107 ntBASIC0.72□□□□□ -2.29
LIMS1P48059 MIR466-201ENST00000580653 84 ntBASIC0.72□□□□□ -2.29
LIMS1P48059 MIR548C-201ENST00000384815 97 ntBASIC0.71□□□□□ -2.3
LIMS1P48059 MIR193B-201ENST00000384907 83 ntBASIC0.71□□□□□ -2.3
LIMS1P48059 MIR630-201ENST00000384957 97 ntBASIC0.71□□□□□ -2.3
LIMS1P48059 MIR501-201ENST00000390204 84 ntBASIC0.71□□□□□ -2.3
LIMS1P48059 SNORA75.1-201ENST00000391130 148 ntBASIC0.71□□□□□ -2.3
LIMS1P48059 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.71□□□□□ -2.3
LIMS1P48059 RNU6-1232P-201ENST00000516299 86 ntBASIC0.71□□□□□ -2.3
LIMS1P48059 MIR4698-201ENST00000577795 80 ntBASIC0.71□□□□□ -2.3
LIMS1P48059 MIR4677-201ENST00000584153 80 ntBASIC0.71□□□□□ -2.3
LIMS1P48059 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
LIMS1P48059 SNORD60.1-201ENST00000362451 73 ntBASIC0.7□□□□□ -2.3
LIMS1P48059 RNU6-829P-201ENST00000363700 112 ntBASIC0.7□□□□□ -2.3
LIMS1P48059 SNORD114-29-201ENST00000364819 70 ntBASIC0.7□□□□□ -2.3
LIMS1P48059 RNU6-987P-201ENST00000384759 104 ntBASIC0.7□□□□□ -2.3
LIMS1P48059 SNORA49-201ENST00000386157 136 ntBASIC0.7□□□□□ -2.3
LIMS1P48059 SNORD2-201ENST00000459163 69 ntBASIC0.7□□□□□ -2.3
LIMS1P48059 RNU6-229P-201ENST00000516614 102 ntBASIC0.7□□□□□ -2.3
LIMS1P48059 AC243829.3-201ENST00000622177 108 ntBASIC0.7□□□□□ -2.3
LIMS1P48059 AC090617.8-201ENST00000623339 167 ntBASIC0.7□□□□□ -2.3
LIMS1P48059 RNU6-1079P-201ENST00000362861 110 ntBASIC0.69□□□□□ -2.3
LIMS1P48059 Y_RNA.423-201ENST00000384057 113 ntBASIC0.69□□□□□ -2.3
LIMS1P48059 SNORD113-2-201ENST00000391082 72 ntBASIC0.69□□□□□ -2.3
LIMS1P48059 RNU6-175P-201ENST00000516896 107 ntBASIC0.69□□□□□ -2.3
LIMS1P48059 CYP3A54P-201ENST00000566950 75 ntBASIC0.69□□□□□ -2.3
LIMS1P48059 MIR548AD-201ENST00000584780 82 ntBASIC0.69□□□□□ -2.3
LIMS1P48059 MIR4653-201ENST00000585107 83 ntBASIC0.69□□□□□ -2.3
LIMS1P48059 AC243829.6-201ENST00000612652 106 ntBASIC0.69□□□□□ -2.3
LIMS1P48059 U6.96-201ENST00000636425 70 ntBASIC0.69□□□□□ -2.3
LIMS1P48059 RNU7-188P-201ENST00000517063 64 ntBASIC0.68□□□□□ -2.3
LIMS1P48059 MIR6513-201ENST00000621188 64 ntBASIC0.68□□□□□ -2.3
LIMS1P48059 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
LIMS1P48059 RNU4-37P-201ENST00000410214 84 ntBASIC0.67□□□□□ -2.3
LIMS1P48059 RNA5SP436-201ENST00000516020 115 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 167.2 ms