Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 RNU6-990P-201ENST00000364385 104 ntBASIC0.48□□□□□ -2.33
LDLRP01130 SNORD115-22-201ENST00000364456 82 ntBASIC0.48□□□□□ -2.33
LDLRP01130 VTRNA1-3-201ENST00000365645 89 ntBASIC0.48□□□□□ -2.33
LDLRP01130 RNU6-540P-201ENST00000384622 101 ntBASIC0.48□□□□□ -2.33
LDLRP01130 AL691482.2-201ENST00000457453 84 ntBASIC0.48□□□□□ -2.33
LDLRP01130 RNU6-752P-201ENST00000516376 102 ntBASIC0.48□□□□□ -2.33
LDLRP01130 MIR548AE1-201ENST00000583292 70 ntBASIC0.48□□□□□ -2.33
LDLRP01130 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
LDLRP01130 SNORD45.1-201ENST00000363181 77 ntBASIC0.47□□□□□ -2.33
LDLRP01130 SNORD45A-201ENST00000384512 84 ntBASIC0.47□□□□□ -2.33
LDLRP01130 SNORD110-201ENST00000408189 75 ntBASIC0.47□□□□□ -2.33
LDLRP01130 RNU6-1232P-201ENST00000516299 86 ntBASIC0.47□□□□□ -2.33
LDLRP01130 MIR6509-201ENST00000614603 85 ntBASIC0.47□□□□□ -2.33
LDLRP01130 AC073869.9-201ENST00000641610 120 ntBASIC0.47□□□□□ -2.33
LDLRP01130 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.47□□□□□ -2.33
LDLRP01130 RNU6-260P-201ENST00000384092 107 ntBASIC0.46□□□□□ -2.34
LDLRP01130 RNU6-604P-201ENST00000390917 100 ntBASIC0.46□□□□□ -2.34
LDLRP01130 HMGN2P22-201ENST00000427588 175 ntBASIC0.46□□□□□ -2.34
LDLRP01130 AC073261.1-201ENST00000429409 121 ntBASIC0.46□□□□□ -2.34
LDLRP01130 SNORA62.5-201ENST00000516634 120 ntBASIC0.46□□□□□ -2.34
LDLRP01130 MIR3657-201ENST00000584818 117 ntBASIC0.46□□□□□ -2.34
LDLRP01130 MIR6755-201ENST00000619993 66 ntBASIC0.46□□□□□ -2.34
LDLRP01130 MIR518A1-201ENST00000385068 85 ntBASIC0.45□□□□□ -2.34
LDLRP01130 MIR154-201ENST00000385243 84 ntBASIC0.45□□□□□ -2.34
LDLRP01130 MIR652-201ENST00000385278 98 ntBASIC0.45□□□□□ -2.34
LDLRP01130 SNORA40.8-201ENST00000411034 126 ntBASIC0.45□□□□□ -2.34
LDLRP01130 AC006210.1-201ENST00000424882 111 ntBASIC0.45□□□□□ -2.34
LDLRP01130 AC114801.3-201ENST00000510231 177 ntBASIC0.45□□□□□ -2.34
LDLRP01130 MIR4514-201ENST00000581410 57 ntBASIC0.45□□□□□ -2.34
LDLRP01130 MIR582-201ENST00000365731 98 ntBASIC0.44□□□□□ -2.34
LDLRP01130 SNORD116-24-201ENST00000384549 92 ntBASIC0.44□□□□□ -2.34
LDLRP01130 RNA5SP63-201ENST00000391225 112 ntBASIC0.44□□□□□ -2.34
LDLRP01130 AC114737.2-201ENST00000421583 173 ntBASIC0.44□□□□□ -2.34
LDLRP01130 RNU6-982P-201ENST00000516216 102 ntBASIC0.44□□□□□ -2.34
LDLRP01130 SNORD113.1-201ENST00000363280 73 ntBASIC0.43□□□□□ -2.34
LDLRP01130 SNORD71-201ENST00000411292 86 ntBASIC0.43□□□□□ -2.34
LDLRP01130 SNORA68.3-201ENST00000515906 83 ntBASIC0.43□□□□□ -2.34
LDLRP01130 RNA5SP285-201ENST00000516619 119 ntBASIC0.43□□□□□ -2.34
LDLRP01130 MIR4473-201ENST00000583731 91 ntBASIC0.43□□□□□ -2.34
LDLRP01130 MIR6086-201ENST00000638065 55 ntBASIC0.43□□□□□ -2.34
LDLRP01130 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
LDLRP01130 Y_RNA.386-201ENST00000383913 105 ntBASIC0.42□□□□□ -2.34
LDLRP01130 Y_RNA.407-201ENST00000383986 113 ntBASIC0.42□□□□□ -2.34
LDLRP01130 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.42□□□□□ -2.34
LDLRP01130 MIR5706-201ENST00000579841 80 ntBASIC0.42□□□□□ -2.34
LDLRP01130 AC023932.2-201ENST00000603176 175 ntBASIC0.42□□□□□ -2.34
LDLRP01130 SNORA2.1-201ENST00000363089 137 ntBASIC0.41□□□□□ -2.34
LDLRP01130 SNORD44.1-201ENST00000363202 61 ntBASIC0.41□□□□□ -2.34
LDLRP01130 Y_RNA.125-201ENST00000363371 111 ntBASIC0.41□□□□□ -2.34
LDLRP01130 Y_RNA.423-201ENST00000384057 113 ntBASIC0.41□□□□□ -2.34
LDLRP01130 Y_RNA.633-201ENST00000459107 95 ntBASIC0.41□□□□□ -2.34
LDLRP01130 RNU6-871P-201ENST00000516122 100 ntBASIC0.41□□□□□ -2.34
LDLRP01130 SCARNA17.3-201ENST00000516381 125 ntBASIC0.41□□□□□ -2.34
LDLRP01130 RNA5SP147-201ENST00000516493 109 ntBASIC0.41□□□□□ -2.34
LDLRP01130 RNU6-539P-201ENST00000516665 103 ntBASIC0.41□□□□□ -2.34
LDLRP01130 RNU6-881P-201ENST00000516813 102 ntBASIC0.41□□□□□ -2.34
LDLRP01130 MIR8053-201ENST00000613344 75 ntBASIC0.41□□□□□ -2.34
LDLRP01130 MIR548E-201ENST00000408287 88 ntBASIC0.4□□□□□ -2.35
LDLRP01130 snoU13.13-201ENST00000458842 104 ntBASIC0.4□□□□□ -2.35
LDLRP01130 SNORD114-4-201ENST00000363962 75 ntBASIC0.39□□□□□ -2.35
LDLRP01130 SNORA2A-201ENST00000383885 135 ntBASIC0.39□□□□□ -2.35
LDLRP01130 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
LDLRP01130 RNU6-649P-201ENST00000384463 107 ntBASIC0.39□□□□□ -2.35
LDLRP01130 MIR501-201ENST00000390204 84 ntBASIC0.39□□□□□ -2.35
LDLRP01130 RNU6-663P-201ENST00000391105 106 ntBASIC0.39□□□□□ -2.35
LDLRP01130 RNU6-656P-201ENST00000516785 107 ntBASIC0.39□□□□□ -2.35
LDLRP01130 MIR6739-201ENST00000622461 75 ntBASIC0.39□□□□□ -2.35
LDLRP01130 U6.111-201ENST00000636093 83 ntBASIC0.39□□□□□ -2.35
LDLRP01130 MIRLET7D-201ENST00000362263 87 ntBASIC0.38□□□□□ -2.35
LDLRP01130 SNORD30.1-201ENST00000391309 70 ntBASIC0.38□□□□□ -2.35
LDLRP01130 RNU6-863P-201ENST00000515989 104 ntBASIC0.38□□□□□ -2.35
LDLRP01130 uc_338.10-201ENST00000621872 182 ntBASIC0.38□□□□□ -2.35
LDLRP01130 MIR103A1-201ENST00000362165 78 ntBASIC0.37□□□□□ -2.35
LDLRP01130 RNU6-1216P-201ENST00000362590 107 ntBASIC0.37□□□□□ -2.35
LDLRP01130 RNU6-645P-201ENST00000364649 106 ntBASIC0.37□□□□□ -2.35
LDLRP01130 RNU6-848P-201ENST00000515948 107 ntBASIC0.37□□□□□ -2.35
LDLRP01130 RNU6-617P-201ENST00000516147 107 ntBASIC0.37□□□□□ -2.35
LDLRP01130 RNU6-473P-201ENST00000516164 107 ntBASIC0.37□□□□□ -2.35
LDLRP01130 RNU6-1049P-201ENST00000516414 107 ntBASIC0.37□□□□□ -2.35
LDLRP01130 MIR4677-201ENST00000584153 80 ntBASIC0.37□□□□□ -2.35
LDLRP01130 AC005520.4-201ENST00000604337 90 ntBASIC0.37□□□□□ -2.35
LDLRP01130 RNU6-895P-201ENST00000384125 103 ntBASIC0.36□□□□□ -2.35
LDLRP01130 RNU6-800P-201ENST00000384473 103 ntBASIC0.36□□□□□ -2.35
LDLRP01130 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.36□□□□□ -2.35
LDLRP01130 MIR3925-201ENST00000584674 77 ntBASIC0.36□□□□□ -2.35
LDLRP01130 MIR548AD-201ENST00000584780 82 ntBASIC0.36□□□□□ -2.35
LDLRP01130 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.36□□□□□ -2.35
LDLRP01130 MIR516B1-201ENST00000385211 90 ntBASIC0.35□□□□□ -2.35
LDLRP01130 SNORA49-201ENST00000386157 136 ntBASIC0.35□□□□□ -2.35
LDLRP01130 MIR760-201ENST00000390220 80 ntBASIC0.35□□□□□ -2.35
LDLRP01130 RNU6-788P-201ENST00000390967 104 ntBASIC0.35□□□□□ -2.35
LDLRP01130 RNU6-630P-201ENST00000391258 106 ntBASIC0.35□□□□□ -2.35
LDLRP01130 MIR1265-201ENST00000408444 86 ntBASIC0.35□□□□□ -2.35
LDLRP01130 RNU6-175P-201ENST00000516896 107 ntBASIC0.35□□□□□ -2.35
LDLRP01130 MIR499B-201ENST00000636498 73 ntBASIC0.35□□□□□ -2.35
LDLRP01130 Y_RNA.250-201ENST00000364542 110 ntBASIC0.34□□□□□ -2.36
LDLRP01130 SNORA63.6-201ENST00000364921 119 ntBASIC0.34□□□□□ -2.36
LDLRP01130 SNORA33.1-201ENST00000364957 130 ntBASIC0.34□□□□□ -2.36
LDLRP01130 RNU6-590P-201ENST00000365039 107 ntBASIC0.34□□□□□ -2.36
LDLRP01130 RNA5SP128-201ENST00000365305 116 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms