Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNU6-1152P-201ENST00000384576 107 ntBASIC0.27□□□□□ -2.37
CBX4O00257 MIR652-201ENST00000385278 98 ntBASIC0.27□□□□□ -2.37
CBX4O00257 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.27□□□□□ -2.37
CBX4O00257 SNORD42B-201ENST00000458893 67 ntBASIC0.27□□□□□ -2.37
CBX4O00257 SCARNA17.3-201ENST00000516381 125 ntBASIC0.27□□□□□ -2.37
CBX4O00257 MIR5589-201ENST00000579442 60 ntBASIC0.27□□□□□ -2.37
CBX4O00257 MIR643-201ENST00000385267 97 ntBASIC0.26□□□□□ -2.37
CBX4O00257 RNA5SP299-201ENST00000391203 116 ntBASIC0.26□□□□□ -2.37
CBX4O00257 Y_RNA.606-201ENST00000410579 103 ntBASIC0.26□□□□□ -2.37
CBX4O00257 Y_RNA.316-201ENST00000365118 111 ntBASIC0.25□□□□□ -2.37
CBX4O00257 snoU13.19-201ENST00000459148 104 ntBASIC0.25□□□□□ -2.37
CBX4O00257 MIR20A-201ENST00000362279 71 ntBASIC0.24□□□□□ -2.37
CBX4O00257 RNU6-340P-201ENST00000364005 107 ntBASIC0.24□□□□□ -2.37
CBX4O00257 MIR610-201ENST00000385139 96 ntBASIC0.24□□□□□ -2.37
CBX4O00257 MIR892B-201ENST00000401279 77 ntBASIC0.24□□□□□ -2.37
CBX4O00257 SCARNA11.2-201ENST00000517183 154 ntBASIC0.24□□□□□ -2.37
CBX4O00257 MIR3925-201ENST00000584674 77 ntBASIC0.24□□□□□ -2.37
CBX4O00257 RNU6-315P-201ENST00000362666 107 ntBASIC0.23□□□□□ -2.37
CBX4O00257 RNU7-188P-201ENST00000517063 64 ntBASIC0.23□□□□□ -2.37
CBX4O00257 MIR4666B-201ENST00000578142 81 ntBASIC0.23□□□□□ -2.37
CBX4O00257 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.23□□□□□ -2.37
CBX4O00257 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.23□□□□□ -2.37
CBX4O00257 MIRLET7A1-201ENST00000362295 80 ntBASIC0.22□□□□□ -2.37
CBX4O00257 RNU6-478P-201ENST00000363904 110 ntBASIC0.22□□□□□ -2.37
CBX4O00257 Y_RNA.388-201ENST00000383919 113 ntBASIC0.22□□□□□ -2.37
CBX4O00257 MIR876-201ENST00000401147 81 ntBASIC0.22□□□□□ -2.37
CBX4O00257 AL691482.2-201ENST00000457453 84 ntBASIC0.22□□□□□ -2.37
CBX4O00257 RNU6-752P-201ENST00000516376 102 ntBASIC0.22□□□□□ -2.37
CBX4O00257 MIR4802-201ENST00000581881 80 ntBASIC0.22□□□□□ -2.37
CBX4O00257 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
CBX4O00257 SNORA42.1-201ENST00000363515 137 ntBASIC0.21□□□□□ -2.38
CBX4O00257 RNA5SP173-201ENST00000364857 136 ntBASIC0.21□□□□□ -2.38
CBX4O00257 AC244090.1-201ENST00000441884 93 ntBASIC0.21□□□□□ -2.38
CBX4O00257 Y_RNA.185-201ENST00000363894 100 ntBASIC0.2□□□□□ -2.38
CBX4O00257 RNU6-30P-201ENST00000384561 107 ntBASIC0.2□□□□□ -2.38
CBX4O00257 RNU6-303P-201ENST00000517091 106 ntBASIC0.2□□□□□ -2.38
CBX4O00257 MIR5190-201ENST00000581537 80 ntBASIC0.2□□□□□ -2.38
CBX4O00257 AC104408.1-201ENST00000605241 170 ntBASIC0.2□□□□□ -2.38
CBX4O00257 MIR3202-2-201ENST00000635980 79 ntBASIC0.2□□□□□ -2.38
CBX4O00257 MIR1245B-201ENST00000636115 69 ntBASIC0.2□□□□□ -2.38
CBX4O00257 RNA5SP98-201ENST00000363158 137 ntBASIC0.19□□□□□ -2.38
CBX4O00257 RNU6-1039P-201ENST00000383931 107 ntBASIC0.19□□□□□ -2.38
CBX4O00257 MIR6509-201ENST00000614603 85 ntBASIC0.19□□□□□ -2.38
CBX4O00257 RNU6-1094P-201ENST00000362416 104 ntBASIC0.18□□□□□ -2.38
CBX4O00257 RNA5SP214-201ENST00000363378 118 ntBASIC0.18□□□□□ -2.38
CBX4O00257 RNU6-807P-201ENST00000516805 107 ntBASIC0.18□□□□□ -2.38
CBX4O00257 MIR4743-201ENST00000584576 69 ntBASIC0.18□□□□□ -2.38
CBX4O00257 SNORD2-201ENST00000459163 69 ntBASIC0.17□□□□□ -2.38
CBX4O00257 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.17□□□□□ -2.38
CBX4O00257 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.17□□□□□ -2.38
CBX4O00257 MIR1297-201ENST00000637311 77 ntBASIC0.17□□□□□ -2.38
CBX4O00257 Z95118.1-201ENST00000421372 247 ntBASIC0.16□□□□□ -2.38
CBX4O00257 MIR4712-201ENST00000583750 82 ntBASIC0.16□□□□□ -2.38
CBX4O00257 Y_RNA.219-201ENST00000364232 113 ntBASIC0.15□□□□□ -2.39
CBX4O00257 RNU6-573P-201ENST00000383938 106 ntBASIC0.15□□□□□ -2.39
CBX4O00257 MIR593-201ENST00000384856 100 ntBASIC0.15□□□□□ -2.39
CBX4O00257 MIR548H2-201ENST00000408874 88 ntBASIC0.15□□□□□ -2.39
CBX4O00257 SNORA72.7-201ENST00000516349 94 ntBASIC0.15□□□□□ -2.39
CBX4O00257 MIR4768-201ENST00000585270 74 ntBASIC0.15□□□□□ -2.39
CBX4O00257 RNU6-260P-201ENST00000384092 107 ntBASIC0.14□□□□□ -2.39
CBX4O00257 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.14□□□□□ -2.39
CBX4O00257 RNU6-990P-201ENST00000364385 104 ntBASIC0.13□□□□□ -2.39
CBX4O00257 RNA5SP163-201ENST00000410304 99 ntBASIC0.13□□□□□ -2.39
CBX4O00257 RNA5SP25-201ENST00000410815 110 ntBASIC0.13□□□□□ -2.39
CBX4O00257 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.13□□□□□ -2.39
CBX4O00257 RN7SL660P-201ENST00000614852 299 ntBASIC0.13□□□□□ -2.39
CBX4O00257 MIR371B-201ENST00000638082 66 ntBASIC0.13□□□□□ -2.39
CBX4O00257 SNORD114-9-201ENST00000364370 72 ntBASIC0.12□□□□□ -2.39
CBX4O00257 Y_RNA.313-201ENST00000365095 103 ntBASIC0.12□□□□□ -2.39
CBX4O00257 RNU6-787P-201ENST00000384032 107 ntBASIC0.12□□□□□ -2.39
CBX4O00257 MIR203A-201ENST00000384836 110 ntBASIC0.12□□□□□ -2.39
CBX4O00257 MIR548E-201ENST00000408287 88 ntBASIC0.12□□□□□ -2.39
CBX4O00257 RNU6-758P-201ENST00000516292 89 ntBASIC0.12□□□□□ -2.39
CBX4O00257 MIR6514-201ENST00000622549 70 ntBASIC0.12□□□□□ -2.39
CBX4O00257 SNORA63.6-201ENST00000364921 119 ntBASIC0.11□□□□□ -2.39
CBX4O00257 MIR582-201ENST00000365731 98 ntBASIC0.11□□□□□ -2.39
CBX4O00257 MIR145-201ENST00000384967 88 ntBASIC0.11□□□□□ -2.39
CBX4O00257 MIR1295A-201ENST00000408463 79 ntBASIC0.11□□□□□ -2.39
CBX4O00257 AC074348.1-201ENST00000426503 132 ntBASIC0.11□□□□□ -2.39
CBX4O00257 RNU6-175P-201ENST00000516896 107 ntBASIC0.11□□□□□ -2.39
CBX4O00257 MIR3657-201ENST00000584818 117 ntBASIC0.11□□□□□ -2.39
CBX4O00257 RNA5SP368-201ENST00000364298 116 ntBASIC0.1□□□□□ -2.39
CBX4O00257 RNU7-159P-201ENST00000459284 62 ntBASIC0.1□□□□□ -2.39
CBX4O00257 AC021146.9-201ENST00000512503 156 ntBASIC0.1□□□□□ -2.39
CBX4O00257 CR383656.4-201ENST00000546909 122 ntBASIC0.1□□□□□ -2.39
CBX4O00257 SNORD114-5-201ENST00000362928 70 ntBASIC0.09□□□□□ -2.4
CBX4O00257 SNORA2.1-201ENST00000363089 137 ntBASIC0.09□□□□□ -2.4
CBX4O00257 SNORD114-31-201ENST00000363219 75 ntBASIC0.09□□□□□ -2.4
CBX4O00257 RNU6-1124P-201ENST00000384169 107 ntBASIC0.09□□□□□ -2.4
CBX4O00257 SNORA40.17-201ENST00000517256 115 ntBASIC0.09□□□□□ -2.4
CBX4O00257 IGLVI-20-201ENST00000519296 130 ntBASIC0.09□□□□□ -2.4
CBX4O00257 MIR4484-201ENST00000582855 83 ntBASIC0.09□□□□□ -2.4
CBX4O00257 Y_RNA.250-201ENST00000364542 110 ntBASIC0.08□□□□□ -2.4
CBX4O00257 RNU6-1036P-201ENST00000383959 104 ntBASIC0.08□□□□□ -2.4
CBX4O00257 SNORA8.1-201ENST00000384250 140 ntBASIC0.08□□□□□ -2.4
CBX4O00257 Y_RNA.532-201ENST00000384590 113 ntBASIC0.08□□□□□ -2.4
CBX4O00257 MIR106A-201ENST00000384870 81 ntBASIC0.08□□□□□ -2.4
CBX4O00257 MIR3675-201ENST00000583661 73 ntBASIC0.08□□□□□ -2.4
CBX4O00257 MIR148A-201ENST00000362215 68 ntBASIC0.07□□□□□ -2.4
CBX4O00257 Y_RNA.94-201ENST00000363068 106 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 272.7 ms