Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 AC022709.1-201ENST00000615967 87 ntBASIC1.25□□□□□ -2.21
NOD1Q9Y239 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.25□□□□□ -2.21
NOD1Q9Y239 RNU6-590P-201ENST00000365039 107 ntBASIC1.24□□□□□ -2.21
NOD1Q9Y239 OR2A41P-201ENST00000473586 105 ntBASIC1.24□□□□□ -2.21
NOD1Q9Y239 AC069503.3-201ENST00000618674 145 ntBASIC1.24□□□□□ -2.21
NOD1Q9Y239 MIR6788-201ENST00000618842 66 ntBASIC1.24□□□□□ -2.21
NOD1Q9Y239 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.24□□□□□ -2.21
NOD1Q9Y239 SNORA36.2-201ENST00000384004 127 ntBASIC1.23□□□□□ -2.21
NOD1Q9Y239 RNU6-663P-201ENST00000391105 106 ntBASIC1.23□□□□□ -2.21
NOD1Q9Y239 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.23□□□□□ -2.21
NOD1Q9Y239 MIR7107-201ENST00000611489 80 ntBASIC1.23□□□□□ -2.21
NOD1Q9Y239 MIR6767-201ENST00000637302 66 ntBASIC1.23□□□□□ -2.21
NOD1Q9Y239 MIR548J-201ENST00000408833 112 ntBASIC1.22□□□□□ -2.21
NOD1Q9Y239 RNU6-881P-201ENST00000516813 102 ntBASIC1.22□□□□□ -2.21
NOD1Q9Y239 AC073869.9-201ENST00000641610 120 ntBASIC1.22□□□□□ -2.21
NOD1Q9Y239 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
NOD1Q9Y239 RNY1P8-201ENST00000383970 114 ntBASIC1.21□□□□□ -2.22
NOD1Q9Y239 MIR7-2-201ENST00000384970 110 ntBASIC1.21□□□□□ -2.22
NOD1Q9Y239 SNORD113.1-201ENST00000363280 73 ntBASIC1.19□□□□□ -2.22
NOD1Q9Y239 RNU6-260P-201ENST00000384092 107 ntBASIC1.19□□□□□ -2.22
NOD1Q9Y239 RNA5SP480-201ENST00000516840 109 ntBASIC1.19□□□□□ -2.22
NOD1Q9Y239 AC018659.1-201ENST00000551083 169 ntBASIC1.19□□□□□ -2.22
NOD1Q9Y239 MIR3657-201ENST00000584818 117 ntBASIC1.19□□□□□ -2.22
NOD1Q9Y239 SNORD114-4-201ENST00000363962 75 ntBASIC1.18□□□□□ -2.22
NOD1Q9Y239 MIR608-201ENST00000384820 100 ntBASIC1.18□□□□□ -2.22
NOD1Q9Y239 U6.111-201ENST00000636093 83 ntBASIC1.18□□□□□ -2.22
NOD1Q9Y239 MIR140-201ENST00000385282 100 ntBASIC1.17□□□□□ -2.22
NOD1Q9Y239 AC006210.1-201ENST00000424882 111 ntBASIC1.17□□□□□ -2.22
NOD1Q9Y239 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.17□□□□□ -2.22
NOD1Q9Y239 MIR598-201ENST00000384868 97 ntBASIC1.16□□□□□ -2.22
NOD1Q9Y239 SNORD110-201ENST00000408189 75 ntBASIC1.16□□□□□ -2.22
NOD1Q9Y239 RNU6-1216P-201ENST00000362590 107 ntBASIC1.15□□□□□ -2.23
NOD1Q9Y239 RNU6-990P-201ENST00000364385 104 ntBASIC1.15□□□□□ -2.23
NOD1Q9Y239 RNA5SP517-201ENST00000364724 117 ntBASIC1.15□□□□□ -2.23
NOD1Q9Y239 ACA64.5-201ENST00000516207 127 ntBASIC1.15□□□□□ -2.23
NOD1Q9Y239 AC211469.2-201ENST00000605461 205 ntBASIC1.15□□□□□ -2.23
NOD1Q9Y239 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.15□□□□□ -2.23
NOD1Q9Y239 SNORD114-21-201ENST00000606412 72 ntBASIC1.14□□□□□ -2.23
NOD1Q9Y239 RNU6-800P-201ENST00000384473 103 ntBASIC1.13□□□□□ -2.23
NOD1Q9Y239 Y_RNA.540-201ENST00000384638 111 ntBASIC1.13□□□□□ -2.23
NOD1Q9Y239 MIR4752-201ENST00000579672 72 ntBASIC1.13□□□□□ -2.23
NOD1Q9Y239 AC092634.7-201ENST00000621022 103 ntBASIC1.13□□□□□ -2.23
NOD1Q9Y239 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
NOD1Q9Y239 RNU6-982P-201ENST00000516216 102 ntBASIC1.12□□□□□ -2.23
NOD1Q9Y239 MIR4473-201ENST00000583731 91 ntBASIC1.12□□□□□ -2.23
NOD1Q9Y239 SNORA70.25-201ENST00000612741 95 ntBASIC1.12□□□□□ -2.23
NOD1Q9Y239 PVT1_3.1-201ENST00000620853 95 ntBASIC1.12□□□□□ -2.23
NOD1Q9Y239 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.12□□□□□ -2.23
NOD1Q9Y239 SNORA2.1-201ENST00000363089 137 ntBASIC1.11□□□□□ -2.23
NOD1Q9Y239 Y_RNA.407-201ENST00000383986 113 ntBASIC1.11□□□□□ -2.23
NOD1Q9Y239 RNU6-630P-201ENST00000391258 106 ntBASIC1.11□□□□□ -2.23
NOD1Q9Y239 RNA5SP147-201ENST00000516493 109 ntBASIC1.11□□□□□ -2.23
NOD1Q9Y239 SNORA25.18-201ENST00000607153 114 ntBASIC1.11□□□□□ -2.23
NOD1Q9Y239 Y_RNA.386-201ENST00000383913 105 ntBASIC1.1□□□□□ -2.23
NOD1Q9Y239 SNORD116-24-201ENST00000384549 92 ntBASIC1.1□□□□□ -2.23
NOD1Q9Y239 MIR1285-1-201ENST00000408593 84 ntBASIC1.1□□□□□ -2.23
NOD1Q9Y239 AC125388.1-201ENST00000459631 156 ntBASIC1.1□□□□□ -2.23
NOD1Q9Y239 RNU4-38P-201ENST00000364472 129 ntBASIC1.09□□□□□ -2.23
NOD1Q9Y239 AC069271.1-201ENST00000445577 156 ntBASIC1.09□□□□□ -2.23
NOD1Q9Y239 SNORA40.17-201ENST00000517256 115 ntBASIC1.09□□□□□ -2.23
NOD1Q9Y239 MIR6857-201ENST00000613267 93 ntBASIC1.09□□□□□ -2.23
NOD1Q9Y239 MIR373-201ENST00000362273 69 ntBASIC1.08□□□□□ -2.24
NOD1Q9Y239 SNORD114-26-201ENST00000363543 72 ntBASIC1.08□□□□□ -2.24
NOD1Q9Y239 Y_RNA.340-201ENST00000365330 92 ntBASIC1.08□□□□□ -2.24
NOD1Q9Y239 Y_RNA.443-201ENST00000384135 111 ntBASIC1.08□□□□□ -2.24
NOD1Q9Y239 MIR5000-201ENST00000577717 103 ntBASIC1.08□□□□□ -2.24
NOD1Q9Y239 MIR532-201ENST00000385025 91 ntBASIC1.07□□□□□ -2.24
NOD1Q9Y239 MIR652-201ENST00000385278 98 ntBASIC1.07□□□□□ -2.24
NOD1Q9Y239 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.07□□□□□ -2.24
NOD1Q9Y239 MTND4LP1-201ENST00000446263 157 ntBASIC1.07□□□□□ -2.24
NOD1Q9Y239 MIR548AE1-201ENST00000583292 70 ntBASIC1.07□□□□□ -2.24
NOD1Q9Y239 AC005520.4-201ENST00000604337 90 ntBASIC1.07□□□□□ -2.24
NOD1Q9Y239 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.07□□□□□ -2.24
NOD1Q9Y239 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
NOD1Q9Y239 SNORD118-201ENST00000363593 134 ntBASIC1.06□□□□□ -2.24
NOD1Q9Y239 RNU6-110P-201ENST00000384508 104 ntBASIC1.06□□□□□ -2.24
NOD1Q9Y239 SNORA40.8-201ENST00000411034 126 ntBASIC1.06□□□□□ -2.24
NOD1Q9Y239 CYP3A137P-201ENST00000562436 69 ntBASIC1.06□□□□□ -2.24
NOD1Q9Y239 MIR3973-201ENST00000579824 107 ntBASIC1.06□□□□□ -2.24
NOD1Q9Y239 SCARNA17.3-201ENST00000516381 125 ntBASIC1.05□□□□□ -2.24
NOD1Q9Y239 SNORA25.4-201ENST00000363666 124 ntBASIC1.04□□□□□ -2.24
NOD1Q9Y239 RNU6-645P-201ENST00000364649 106 ntBASIC1.04□□□□□ -2.24
NOD1Q9Y239 PSMC1P5-201ENST00000512850 177 ntBASIC1.04□□□□□ -2.24
NOD1Q9Y239 RNU1-29P-201ENST00000606574 126 ntBASIC1.04□□□□□ -2.24
NOD1Q9Y239 RNU6-668P-201ENST00000364180 107 ntBASIC1.03□□□□□ -2.24
NOD1Q9Y239 SNORD71-201ENST00000411292 86 ntBASIC1.03□□□□□ -2.24
NOD1Q9Y239 MIR5706-201ENST00000579841 80 ntBASIC1.03□□□□□ -2.24
NOD1Q9Y239 MIR6779-201ENST00000617283 64 ntBASIC1.03□□□□□ -2.24
NOD1Q9Y239 uc_338.10-201ENST00000621872 182 ntBASIC1.03□□□□□ -2.24
NOD1Q9Y239 Y_RNA.250-201ENST00000364542 110 ntBASIC1.02□□□□□ -2.25
NOD1Q9Y239 snoU13.13-201ENST00000458842 104 ntBASIC1.02□□□□□ -2.25
NOD1Q9Y239 RNA5SP436-201ENST00000516020 115 ntBASIC1.02□□□□□ -2.25
NOD1Q9Y239 AL590095.2-201ENST00000604136 117 ntBASIC1.02□□□□□ -2.25
NOD1Q9Y239 MIR6739-201ENST00000622461 75 ntBASIC1.02□□□□□ -2.25
NOD1Q9Y239 MIR1265-201ENST00000408444 86 ntBASIC1.01□□□□□ -2.25
NOD1Q9Y239 HMGN2P22-201ENST00000427588 175 ntBASIC1.01□□□□□ -2.25
NOD1Q9Y239 MIR4698-201ENST00000577795 80 ntBASIC1.01□□□□□ -2.25
NOD1Q9Y239 MIR518A1-201ENST00000385068 85 ntBASIC1□□□□□ -2.25
NOD1Q9Y239 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1□□□□□ -2.25
NOD1Q9Y239 AC021146.9-201ENST00000512503 156 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 227 ms