Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 RNA5SP47-201ENST00000517230 109 ntBASIC1.58□□□□□ -2.16
ZC3H4Q9UPT8 RN7SL793P-201ENST00000583259 296 ntBASIC1.58□□□□□ -2.16
ZC3H4Q9UPT8 RNA5SP404-201ENST00000517118 132 ntBASIC1.57□□□□□ -2.16
ZC3H4Q9UPT8 RNU6-726P-201ENST00000364680 107 ntBASIC1.56□□□□□ -2.16
ZC3H4Q9UPT8 RNU6-955P-201ENST00000410497 104 ntBASIC1.56□□□□□ -2.16
ZC3H4Q9UPT8 AC025627.3-201ENST00000582078 182 ntBASIC1.56□□□□□ -2.16
ZC3H4Q9UPT8 SNORD42B-201ENST00000458893 67 ntBASIC1.55□□□□□ -2.16
ZC3H4Q9UPT8 AC068338.1-201ENST00000565567 176 ntBASIC1.55□□□□□ -2.16
ZC3H4Q9UPT8 AC011195.1-201ENST00000578177 177 ntBASIC1.55□□□□□ -2.16
ZC3H4Q9UPT8 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
ZC3H4Q9UPT8 RNU6-471P-201ENST00000383944 106 ntBASIC1.54□□□□□ -2.16
ZC3H4Q9UPT8 MT-TY-201ENST00000387409 66 ntBASIC1.54□□□□□ -2.16
ZC3H4Q9UPT8 SCARNA16.5-201ENST00000517114 183 ntBASIC1.54□□□□□ -2.16
ZC3H4Q9UPT8 SNORD114-24-201ENST00000365029 72 ntBASIC1.53□□□□□ -2.16
ZC3H4Q9UPT8 SNORD116-24-201ENST00000384549 92 ntBASIC1.53□□□□□ -2.16
ZC3H4Q9UPT8 MTND4LP1-201ENST00000446263 157 ntBASIC1.53□□□□□ -2.16
ZC3H4Q9UPT8 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.53□□□□□ -2.16
ZC3H4Q9UPT8 RNA5SP147-201ENST00000516493 109 ntBASIC1.53□□□□□ -2.16
ZC3H4Q9UPT8 MIR3657-201ENST00000584818 117 ntBASIC1.53□□□□□ -2.16
ZC3H4Q9UPT8 RNU1-124P-201ENST00000363861 145 ntBASIC1.52□□□□□ -2.17
ZC3H4Q9UPT8 RNU6-269P-201ENST00000391077 97 ntBASIC1.52□□□□□ -2.17
ZC3H4Q9UPT8 SNORD99-201ENST00000408612 74 ntBASIC1.52□□□□□ -2.17
ZC3H4Q9UPT8 RNA5SP227-201ENST00000516184 113 ntBASIC1.52□□□□□ -2.17
ZC3H4Q9UPT8 RNU6-668P-201ENST00000364180 107 ntBASIC1.51□□□□□ -2.17
ZC3H4Q9UPT8 RNU1-141P-201ENST00000364623 158 ntBASIC1.51□□□□□ -2.17
ZC3H4Q9UPT8 RNU5B-6P-201ENST00000516765 68 ntBASIC1.51□□□□□ -2.17
ZC3H4Q9UPT8 MIR5000-201ENST00000577717 103 ntBASIC1.51□□□□□ -2.17
ZC3H4Q9UPT8 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.5□□□□□ -2.17
ZC3H4Q9UPT8 RNA5SP484-201ENST00000458857 111 ntBASIC1.5□□□□□ -2.17
ZC3H4Q9UPT8 RNA5SP255-201ENST00000516370 107 ntBASIC1.5□□□□□ -2.17
ZC3H4Q9UPT8 AL109933.3-201ENST00000619095 188 ntBASIC1.5□□□□□ -2.17
ZC3H4Q9UPT8 RNU6-260P-201ENST00000384092 107 ntBASIC1.49□□□□□ -2.17
ZC3H4Q9UPT8 MIR9-2-201ENST00000384838 87 ntBASIC1.49□□□□□ -2.17
ZC3H4Q9UPT8 RNU6-990P-201ENST00000364385 104 ntBASIC1.48□□□□□ -2.17
ZC3H4Q9UPT8 AC087343.1-201ENST00000477341 475 ntBASIC1.48□□□□□ -2.17
ZC3H4Q9UPT8 MIR4661-201ENST00000582720 75 ntBASIC1.48□□□□□ -2.17
ZC3H4Q9UPT8 AC073869.9-201ENST00000641610 120 ntBASIC1.48□□□□□ -2.17
ZC3H4Q9UPT8 MIR18A-201ENST00000362310 71 ntBASIC1.46□□□□□ -2.18
ZC3H4Q9UPT8 Y_RNA.68-201ENST00000362881 102 ntBASIC1.46□□□□□ -2.18
ZC3H4Q9UPT8 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
ZC3H4Q9UPT8 Y_RNA.433-201ENST00000384089 102 ntBASIC1.46□□□□□ -2.18
ZC3H4Q9UPT8 SNORA8.2-201ENST00000384372 139 ntBASIC1.46□□□□□ -2.18
ZC3H4Q9UPT8 MIR4295-201ENST00000585286 85 ntBASIC1.46□□□□□ -2.18
ZC3H4Q9UPT8 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.46□□□□□ -2.18
ZC3H4Q9UPT8 RNU6-645P-201ENST00000364649 106 ntBASIC1.45□□□□□ -2.18
ZC3H4Q9UPT8 MIR758-201ENST00000390227 88 ntBASIC1.45□□□□□ -2.18
ZC3H4Q9UPT8 RNA5SP222-201ENST00000411039 105 ntBASIC1.45□□□□□ -2.18
ZC3H4Q9UPT8 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.45□□□□□ -2.18
ZC3H4Q9UPT8 SNORA2.1-201ENST00000363089 137 ntBASIC1.44□□□□□ -2.18
ZC3H4Q9UPT8 MIR216A-201ENST00000385063 110 ntBASIC1.44□□□□□ -2.18
ZC3H4Q9UPT8 RNU6-1187P-201ENST00000364771 110 ntBASIC1.43□□□□□ -2.18
ZC3H4Q9UPT8 AC211469.2-201ENST00000605461 205 ntBASIC1.43□□□□□ -2.18
ZC3H4Q9UPT8 RNA5SP457-201ENST00000363657 124 ntBASIC1.42□□□□□ -2.18
ZC3H4Q9UPT8 SNORD114-4-201ENST00000363962 75 ntBASIC1.42□□□□□ -2.18
ZC3H4Q9UPT8 RNA5SP268-201ENST00000516828 124 ntBASIC1.42□□□□□ -2.18
ZC3H4Q9UPT8 AC069503.3-201ENST00000618674 145 ntBASIC1.42□□□□□ -2.18
ZC3H4Q9UPT8 MIR4511-201ENST00000582784 87 ntBASIC1.41□□□□□ -2.18
ZC3H4Q9UPT8 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.41□□□□□ -2.18
ZC3H4Q9UPT8 AC103706.3-201ENST00000636297 85 ntBASIC1.41□□□□□ -2.18
ZC3H4Q9UPT8 MIR373-201ENST00000362273 69 ntBASIC1.4□□□□□ -2.18
ZC3H4Q9UPT8 AC006210.1-201ENST00000424882 111 ntBASIC1.4□□□□□ -2.18
ZC3H4Q9UPT8 AC018659.1-201ENST00000551083 169 ntBASIC1.4□□□□□ -2.18
ZC3H4Q9UPT8 MIR4473-201ENST00000583731 91 ntBASIC1.4□□□□□ -2.18
ZC3H4Q9UPT8 AL162376.1-201ENST00000624117 175 ntBASIC1.4□□□□□ -2.18
ZC3H4Q9UPT8 RNU4-45P-201ENST00000365469 141 ntBASIC1.4□□□□□ -2.19
ZC3H4Q9UPT8 RNA5SP94-201ENST00000516917 108 ntBASIC1.4□□□□□ -2.19
ZC3H4Q9UPT8 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.4□□□□□ -2.19
ZC3H4Q9UPT8 SNORA36.1-201ENST00000363424 132 ntBASIC1.39□□□□□ -2.19
ZC3H4Q9UPT8 snoU13.13-201ENST00000458842 104 ntBASIC1.39□□□□□ -2.19
ZC3H4Q9UPT8 MIR6828-201ENST00000636181 60 ntBASIC1.39□□□□□ -2.19
ZC3H4Q9UPT8 SNORA36.2-201ENST00000384004 127 ntBASIC1.38□□□□□ -2.19
ZC3H4Q9UPT8 MIR548C-201ENST00000384815 97 ntBASIC1.37□□□□□ -2.19
ZC3H4Q9UPT8 CYP3A137P-201ENST00000562436 69 ntBASIC1.37□□□□□ -2.19
ZC3H4Q9UPT8 MIR7107-201ENST00000611489 80 ntBASIC1.37□□□□□ -2.19
ZC3H4Q9UPT8 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
ZC3H4Q9UPT8 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.36□□□□□ -2.19
ZC3H4Q9UPT8 OR2A41P-201ENST00000473586 105 ntBASIC1.36□□□□□ -2.19
ZC3H4Q9UPT8 MIR6857-201ENST00000613267 93 ntBASIC1.36□□□□□ -2.19
ZC3H4Q9UPT8 MIR193B-201ENST00000384907 83 ntBASIC1.35□□□□□ -2.19
ZC3H4Q9UPT8 SNORD110-201ENST00000408189 75 ntBASIC1.35□□□□□ -2.19
ZC3H4Q9UPT8 AC021146.9-201ENST00000512503 156 ntBASIC1.35□□□□□ -2.19
ZC3H4Q9UPT8 SNORA40.17-201ENST00000517256 115 ntBASIC1.35□□□□□ -2.19
ZC3H4Q9UPT8 Y_RNA.407-201ENST00000383986 113 ntBASIC1.34□□□□□ -2.2
ZC3H4Q9UPT8 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.2
ZC3H4Q9UPT8 RNY1P8-201ENST00000383970 114 ntBASIC1.33□□□□□ -2.2
ZC3H4Q9UPT8 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.33□□□□□ -2.2
ZC3H4Q9UPT8 RNA5SP476-201ENST00000516613 103 ntBASIC1.33□□□□□ -2.2
ZC3H4Q9UPT8 RNU6-1162P-201ENST00000384443 104 ntBASIC1.32□□□□□ -2.2
ZC3H4Q9UPT8 RNU6-656P-201ENST00000516785 107 ntBASIC1.32□□□□□ -2.2
ZC3H4Q9UPT8 MIR1273G-201ENST00000577677 100 ntBASIC1.32□□□□□ -2.2
ZC3H4Q9UPT8 MIR4752-201ENST00000579672 72 ntBASIC1.32□□□□□ -2.2
ZC3H4Q9UPT8 AL353765.1-201ENST00000605514 183 ntBASIC1.32□□□□□ -2.2
ZC3H4Q9UPT8 MIR532-201ENST00000385025 91 ntBASIC1.31□□□□□ -2.2
ZC3H4Q9UPT8 RNU6-542P-201ENST00000516405 103 ntBASIC1.31□□□□□ -2.2
ZC3H4Q9UPT8 MIR548V-201ENST00000584165 80 ntBASIC1.31□□□□□ -2.2
ZC3H4Q9UPT8 AL590095.2-201ENST00000604136 117 ntBASIC1.31□□□□□ -2.2
ZC3H4Q9UPT8 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
ZC3H4Q9UPT8 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
ZC3H4Q9UPT8 Y_RNA.375-201ENST00000365625 101 ntBASIC1.3□□□□□ -2.2
ZC3H4Q9UPT8 MIR652-201ENST00000385278 98 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms