Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MIR3657-201ENST00000584818 117 ntBASIC1.43□□□□□ -2.18
LIMD1Q9UGP4 SNORA2.1-201ENST00000363089 137 ntBASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 SNORD114-27-201ENST00000363766 70 ntBASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 RNU1-93P-201ENST00000364704 169 ntBASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 RNA5SP94-201ENST00000516917 108 ntBASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 AC005520.4-201ENST00000604337 90 ntBASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
LIMD1Q9UGP4 SNORD114-26-201ENST00000363543 72 ntBASIC1.41□□□□□ -2.18
LIMD1Q9UGP4 RNA5SP484-201ENST00000458857 111 ntBASIC1.41□□□□□ -2.18
LIMD1Q9UGP4 RPS29P1-201ENST00000465274 159 ntBASIC1.41□□□□□ -2.18
LIMD1Q9UGP4 AL353765.1-201ENST00000605514 183 ntBASIC1.41□□□□□ -2.18
LIMD1Q9UGP4 MIR203A-201ENST00000384836 110 ntBASIC1.4□□□□□ -2.19
LIMD1Q9UGP4 MIR1265-201ENST00000408444 86 ntBASIC1.4□□□□□ -2.19
LIMD1Q9UGP4 RNA5SP325-201ENST00000363756 130 ntBASIC1.39□□□□□ -2.19
LIMD1Q9UGP4 Y_RNA.205-201ENST00000364128 113 ntBASIC1.39□□□□□ -2.19
LIMD1Q9UGP4 Y_RNA.250-201ENST00000364542 110 ntBASIC1.39□□□□□ -2.19
LIMD1Q9UGP4 RNA5SP222-201ENST00000411039 105 ntBASIC1.39□□□□□ -2.19
LIMD1Q9UGP4 SNORA36.1-201ENST00000363424 132 ntBASIC1.38□□□□□ -2.19
LIMD1Q9UGP4 MIR6779-201ENST00000617283 64 ntBASIC1.38□□□□□ -2.19
LIMD1Q9UGP4 SNORD116-24-201ENST00000384549 92 ntBASIC1.37□□□□□ -2.19
LIMD1Q9UGP4 RNU6-955P-201ENST00000410497 104 ntBASIC1.37□□□□□ -2.19
LIMD1Q9UGP4 RNA5SP61-201ENST00000516453 100 ntBASIC1.37□□□□□ -2.19
LIMD1Q9UGP4 PVT1_3.1-201ENST00000620853 95 ntBASIC1.37□□□□□ -2.19
LIMD1Q9UGP4 RNU6-668P-201ENST00000364180 107 ntBASIC1.36□□□□□ -2.19
LIMD1Q9UGP4 AC006210.1-201ENST00000424882 111 ntBASIC1.36□□□□□ -2.19
LIMD1Q9UGP4 RNU5B-6P-201ENST00000516765 68 ntBASIC1.36□□□□□ -2.19
LIMD1Q9UGP4 MIR7974-201ENST00000615835 79 ntBASIC1.36□□□□□ -2.19
LIMD1Q9UGP4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
LIMD1Q9UGP4 SNORA40.6-201ENST00000391153 128 ntBASIC1.35□□□□□ -2.19
LIMD1Q9UGP4 MIR3660-201ENST00000584845 100 ntBASIC1.35□□□□□ -2.19
LIMD1Q9UGP4 AC103706.3-201ENST00000636297 85 ntBASIC1.35□□□□□ -2.19
LIMD1Q9UGP4 Y_RNA.407-201ENST00000383986 113 ntBASIC1.34□□□□□ -2.19
LIMD1Q9UGP4 RNU6-1223P-201ENST00000517124 104 ntBASIC1.34□□□□□ -2.19
LIMD1Q9UGP4 MIR7107-201ENST00000611489 80 ntBASIC1.34□□□□□ -2.19
LIMD1Q9UGP4 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.34□□□□□ -2.2
LIMD1Q9UGP4 MIR548J-201ENST00000408833 112 ntBASIC1.33□□□□□ -2.2
LIMD1Q9UGP4 RNU6-982P-201ENST00000516216 102 ntBASIC1.33□□□□□ -2.2
LIMD1Q9UGP4 AC018659.1-201ENST00000551083 169 ntBASIC1.33□□□□□ -2.2
LIMD1Q9UGP4 MIR598-201ENST00000384868 97 ntBASIC1.32□□□□□ -2.2
LIMD1Q9UGP4 SNORD110-201ENST00000408189 75 ntBASIC1.32□□□□□ -2.2
LIMD1Q9UGP4 MIR6788-201ENST00000618842 66 ntBASIC1.32□□□□□ -2.2
LIMD1Q9UGP4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.32□□□□□ -2.2
LIMD1Q9UGP4 RNU6-645P-201ENST00000364649 106 ntBASIC1.31□□□□□ -2.2
LIMD1Q9UGP4 MIR151B-201ENST00000584249 96 ntBASIC1.31□□□□□ -2.2
LIMD1Q9UGP4 MIR6739-201ENST00000622461 75 ntBASIC1.31□□□□□ -2.2
LIMD1Q9UGP4 MIR150-201ENST00000385048 84 ntBASIC1.3□□□□□ -2.2
LIMD1Q9UGP4 MIR4511-201ENST00000582784 87 ntBASIC1.3□□□□□ -2.2
LIMD1Q9UGP4 MIR6767-201ENST00000637302 66 ntBASIC1.3□□□□□ -2.2
LIMD1Q9UGP4 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.29□□□□□ -2.2
LIMD1Q9UGP4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 RNU6-990P-201ENST00000364385 104 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 SNORA36.2-201ENST00000384004 127 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 RNU6-1162P-201ENST00000384443 104 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 MIR140-201ENST00000385282 100 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 MIR758-201ENST00000390227 88 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 SCARNA17.3-201ENST00000516381 125 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 MIR5706-201ENST00000579841 80 ntBASIC1.28□□□□□ -2.2
LIMD1Q9UGP4 MIR608-201ENST00000384820 100 ntBASIC1.27□□□□□ -2.21
LIMD1Q9UGP4 MIR4295-201ENST00000585286 85 ntBASIC1.27□□□□□ -2.21
LIMD1Q9UGP4 RNA5SP436-201ENST00000516020 115 ntBASIC1.26□□□□□ -2.21
LIMD1Q9UGP4 RNA5SP147-201ENST00000516493 109 ntBASIC1.26□□□□□ -2.21
LIMD1Q9UGP4 AC087343.1-201ENST00000477341 475 ntBASIC1.25□□□□□ -2.21
LIMD1Q9UGP4 AC068338.1-201ENST00000565567 176 ntBASIC1.25□□□□□ -2.21
LIMD1Q9UGP4 AC092634.7-201ENST00000621022 103 ntBASIC1.25□□□□□ -2.21
LIMD1Q9UGP4 RNU6-542P-201ENST00000516405 103 ntBASIC1.24□□□□□ -2.21
LIMD1Q9UGP4 SNORA15B-2-201ENST00000384058 135 ntBASIC1.23□□□□□ -2.21
LIMD1Q9UGP4 SNORA15B-1-201ENST00000384334 135 ntBASIC1.23□□□□□ -2.21
LIMD1Q9UGP4 RNU6-110P-201ENST00000384508 104 ntBASIC1.23□□□□□ -2.21
LIMD1Q9UGP4 SNORA40.17-201ENST00000517256 115 ntBASIC1.23□□□□□ -2.21
LIMD1Q9UGP4 U7.6-201ENST00000610841 64 ntBASIC1.23□□□□□ -2.21
LIMD1Q9UGP4 RNA5SP215-201ENST00000363440 122 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 RNA5SP517-201ENST00000364724 117 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 RNU6-1187P-201ENST00000364771 110 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 Y_RNA.375-201ENST00000365625 101 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 MIR521-2-201ENST00000384818 87 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 MIR4473-201ENST00000583731 91 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 uc_338.10-201ENST00000621872 182 ntBASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
LIMD1Q9UGP4 MIR652-201ENST00000385278 98 ntBASIC1.21□□□□□ -2.22
LIMD1Q9UGP4 SNORD71-201ENST00000411292 86 ntBASIC1.21□□□□□ -2.22
LIMD1Q9UGP4 AC021146.9-201ENST00000512503 156 ntBASIC1.21□□□□□ -2.22
LIMD1Q9UGP4 SNORA40.8-201ENST00000411034 126 ntBASIC1.2□□□□□ -2.22
LIMD1Q9UGP4 OR2A41P-201ENST00000473586 105 ntBASIC1.2□□□□□ -2.22
LIMD1Q9UGP4 RNU6-656P-201ENST00000516785 107 ntBASIC1.2□□□□□ -2.22
LIMD1Q9UGP4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.19□□□□□ -2.22
LIMD1Q9UGP4 SNORA63.6-201ENST00000364921 119 ntBASIC1.19□□□□□ -2.22
LIMD1Q9UGP4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.19□□□□□ -2.22
LIMD1Q9UGP4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.18□□□□□ -2.22
LIMD1Q9UGP4 SNORA70.25-201ENST00000612741 95 ntBASIC1.18□□□□□ -2.22
LIMD1Q9UGP4 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.18□□□□□ -2.22
LIMD1Q9UGP4 SNORD118-201ENST00000363593 134 ntBASIC1.17□□□□□ -2.22
LIMD1Q9UGP4 RNU6-302P-201ENST00000365249 107 ntBASIC1.16□□□□□ -2.22
LIMD1Q9UGP4 RNU6-848P-201ENST00000515948 107 ntBASIC1.16□□□□□ -2.22
LIMD1Q9UGP4 RNU6-617P-201ENST00000516147 107 ntBASIC1.16□□□□□ -2.22
LIMD1Q9UGP4 RNU6-473P-201ENST00000516164 107 ntBASIC1.16□□□□□ -2.22
LIMD1Q9UGP4 RNU6-1049P-201ENST00000516414 107 ntBASIC1.16□□□□□ -2.22
LIMD1Q9UGP4 MIR548AE1-201ENST00000583292 70 ntBASIC1.16□□□□□ -2.22
LIMD1Q9UGP4 RNU6-669P-201ENST00000365575 107 ntBASIC1.15□□□□□ -2.23
LIMD1Q9UGP4 RNY1P8-201ENST00000383970 114 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 285.9 ms