Protein–RNA interactions for Protein: Q9NZU5

LMCD1, LIM and cysteine-rich domains protein 1, humanhuman

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1Q9NZU5 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.48□□□□□ -2.17
LMCD1Q9NZU5 AC067940.1-201ENST00000458411 300 ntBASIC1.48□□□□□ -2.17
LMCD1Q9NZU5 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.47□□□□□ -2.17
LMCD1Q9NZU5 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.47□□□□□ -2.17
LMCD1Q9NZU5 MIR598-201ENST00000384868 97 ntBASIC1.47□□□□□ -2.17
LMCD1Q9NZU5 SNORA70.22-201ENST00000517160 124 ntBASIC1.47□□□□□ -2.17
LMCD1Q9NZU5 U4.4-201ENST00000620626 117 ntBASIC1.47□□□□□ -2.17
LMCD1Q9NZU5 RNA5SP325-201ENST00000363756 130 ntBASIC1.46□□□□□ -2.18
LMCD1Q9NZU5 MIR520E-201ENST00000384867 87 ntBASIC1.46□□□□□ -2.18
LMCD1Q9NZU5 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.46□□□□□ -2.18
LMCD1Q9NZU5 RNU7-174P-201ENST00000516248 59 ntBASIC1.46□□□□□ -2.18
LMCD1Q9NZU5 MIR3660-201ENST00000584845 100 ntBASIC1.46□□□□□ -2.18
LMCD1Q9NZU5 uc_338.10-201ENST00000621872 182 ntBASIC1.46□□□□□ -2.18
LMCD1Q9NZU5 RNU6-520P-201ENST00000384717 104 ntBASIC1.45□□□□□ -2.18
LMCD1Q9NZU5 RNU7-104P-201ENST00000459398 79 ntBASIC1.45□□□□□ -2.18
LMCD1Q9NZU5 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.45□□□□□ -2.18
LMCD1Q9NZU5 MIR6788-201ENST00000618842 66 ntBASIC1.45□□□□□ -2.18
LMCD1Q9NZU5 MIR151B-201ENST00000584249 96 ntBASIC1.44□□□□□ -2.18
LMCD1Q9NZU5 RNU6-698P-201ENST00000363523 107 ntBASIC1.43□□□□□ -2.18
LMCD1Q9NZU5 RNU6-34P-201ENST00000364874 107 ntBASIC1.43□□□□□ -2.18
LMCD1Q9NZU5 MIR521-2-201ENST00000384818 87 ntBASIC1.43□□□□□ -2.18
LMCD1Q9NZU5 MIR222-201ENST00000384992 110 ntBASIC1.43□□□□□ -2.18
LMCD1Q9NZU5 RNA5SP61-201ENST00000516453 100 ntBASIC1.43□□□□□ -2.18
LMCD1Q9NZU5 AC018659.1-201ENST00000551083 169 ntBASIC1.43□□□□□ -2.18
LMCD1Q9NZU5 AL136317.1-201ENST00000612653 226 ntBASIC1.43□□□□□ -2.18
LMCD1Q9NZU5 U2.7-201ENST00000619197 100 ntBASIC1.43□□□□□ -2.18
LMCD1Q9NZU5 MT-TY-201ENST00000387409 66 ntBASIC1.42□□□□□ -2.18
LMCD1Q9NZU5 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
LMCD1Q9NZU5 Y_RNA.250-201ENST00000364542 110 ntBASIC1.41□□□□□ -2.18
LMCD1Q9NZU5 MIR644A-201ENST00000385262 94 ntBASIC1.41□□□□□ -2.18
LMCD1Q9NZU5 SNORD113-2-201ENST00000391082 72 ntBASIC1.41□□□□□ -2.18
LMCD1Q9NZU5 MIR1827-201ENST00000408549 66 ntBASIC1.41□□□□□ -2.18
LMCD1Q9NZU5 AC002429.1-201ENST00000437672 148 ntBASIC1.41□□□□□ -2.18
LMCD1Q9NZU5 RPS29P1-201ENST00000465274 159 ntBASIC1.41□□□□□ -2.18
LMCD1Q9NZU5 Y_RNA.174-201ENST00000363781 105 ntBASIC1.4□□□□□ -2.19
LMCD1Q9NZU5 RNU6-939P-201ENST00000384634 107 ntBASIC1.4□□□□□ -2.19
LMCD1Q9NZU5 SNORA41B-201ENST00000384785 128 ntBASIC1.4□□□□□ -2.19
LMCD1Q9NZU5 MIR517B-201ENST00000385102 67 ntBASIC1.4□□□□□ -2.19
LMCD1Q9NZU5 MIR548F3-201ENST00000408509 87 ntBASIC1.4□□□□□ -2.19
LMCD1Q9NZU5 snoU13.13-201ENST00000458842 104 ntBASIC1.4□□□□□ -2.19
LMCD1Q9NZU5 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC1.4□□□□□ -2.19
LMCD1Q9NZU5 RNU6-1162P-201ENST00000384443 104 ntBASIC1.39□□□□□ -2.19
LMCD1Q9NZU5 MIR548C-201ENST00000384815 97 ntBASIC1.39□□□□□ -2.19
LMCD1Q9NZU5 SNORD89-201ENST00000390981 114 ntBASIC1.39□□□□□ -2.19
LMCD1Q9NZU5 SNORD41.1-201ENST00000391000 69 ntBASIC1.39□□□□□ -2.19
LMCD1Q9NZU5 MIR548J-201ENST00000408833 112 ntBASIC1.39□□□□□ -2.19
LMCD1Q9NZU5 AC067863.3-201ENST00000624172 122 ntBASIC1.39□□□□□ -2.19
LMCD1Q9NZU5 RNU6-930P-201ENST00000390938 100 ntBASIC1.38□□□□□ -2.19
LMCD1Q9NZU5 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.38□□□□□ -2.19
LMCD1Q9NZU5 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.38□□□□□ -2.19
LMCD1Q9NZU5 RNA5SP327-201ENST00000362494 101 ntBASIC1.37□□□□□ -2.19
LMCD1Q9NZU5 SNORD12-201ENST00000391002 90 ntBASIC1.37□□□□□ -2.19
LMCD1Q9NZU5 Y_RNA.633-201ENST00000459107 95 ntBASIC1.37□□□□□ -2.19
LMCD1Q9NZU5 RNU6-231P-201ENST00000517122 103 ntBASIC1.37□□□□□ -2.19
LMCD1Q9NZU5 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
LMCD1Q9NZU5 RNU4-33P-201ENST00000364316 85 ntBASIC1.36□□□□□ -2.19
LMCD1Q9NZU5 AC002350.1-201ENST00000490759 375 ntBASIC1.36□□□□□ -2.19
LMCD1Q9NZU5 SNORA40.16-201ENST00000517238 121 ntBASIC1.36□□□□□ -2.19
LMCD1Q9NZU5 SNORA33.1-201ENST00000364957 130 ntBASIC1.35□□□□□ -2.19
LMCD1Q9NZU5 RNU7-119P-201ENST00000459279 63 ntBASIC1.35□□□□□ -2.19
LMCD1Q9NZU5 MIR4460-201ENST00000577862 86 ntBASIC1.35□□□□□ -2.19
LMCD1Q9NZU5 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.35□□□□□ -2.19
LMCD1Q9NZU5 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
LMCD1Q9NZU5 Y_RNA.125-201ENST00000363371 111 ntBASIC1.34□□□□□ -2.19
LMCD1Q9NZU5 Y_RNA.325-201ENST00000365171 122 ntBASIC1.34□□□□□ -2.19
LMCD1Q9NZU5 SNORA25-201ENST00000384384 134 ntBASIC1.34□□□□□ -2.19
LMCD1Q9NZU5 RNU6-1246P-201ENST00000391064 107 ntBASIC1.34□□□□□ -2.19
LMCD1Q9NZU5 RNU7-74P-201ENST00000459104 62 ntBASIC1.34□□□□□ -2.19
LMCD1Q9NZU5 AC021146.9-201ENST00000512503 156 ntBASIC1.34□□□□□ -2.19
LMCD1Q9NZU5 MIR6767-201ENST00000637302 66 ntBASIC1.34□□□□□ -2.19
LMCD1Q9NZU5 SNORD114-27-201ENST00000363766 70 ntBASIC1.33□□□□□ -2.2
LMCD1Q9NZU5 RNU1-141P-201ENST00000364623 158 ntBASIC1.33□□□□□ -2.2
LMCD1Q9NZU5 SNORD26-201ENST00000384147 75 ntBASIC1.33□□□□□ -2.2
LMCD1Q9NZU5 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
LMCD1Q9NZU5 RNU5B-6P-201ENST00000516765 68 ntBASIC1.33□□□□□ -2.2
LMCD1Q9NZU5 AC244669.1-204ENST00000621564 178 ntBASIC1.33□□□□□ -2.2
LMCD1Q9NZU5 RNU6-726P-201ENST00000364680 107 ntBASIC1.32□□□□□ -2.2
LMCD1Q9NZU5 SNORD28-201ENST00000384706 75 ntBASIC1.32□□□□□ -2.2
LMCD1Q9NZU5 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.32□□□□□ -2.2
LMCD1Q9NZU5 MIR4639-201ENST00000584938 69 ntBASIC1.32□□□□□ -2.2
LMCD1Q9NZU5 MIR26B-201ENST00000362251 77 ntBASIC1.31□□□□□ -2.2
LMCD1Q9NZU5 Y_RNA.246-201ENST00000364495 108 ntBASIC1.31□□□□□ -2.2
LMCD1Q9NZU5 SNORD105-201ENST00000386910 85 ntBASIC1.31□□□□□ -2.2
LMCD1Q9NZU5 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
LMCD1Q9NZU5 MIR548L-201ENST00000408303 86 ntBASIC1.31□□□□□ -2.2
LMCD1Q9NZU5 RNU6-469P-201ENST00000516253 101 ntBASIC1.31□□□□□ -2.2
LMCD1Q9NZU5 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
LMCD1Q9NZU5 SNORD114-4-201ENST00000363962 75 ntBASIC1.3□□□□□ -2.2
LMCD1Q9NZU5 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.3□□□□□ -2.2
LMCD1Q9NZU5 AC087343.1-201ENST00000477341 475 ntBASIC1.3□□□□□ -2.2
LMCD1Q9NZU5 MIR4295-201ENST00000585286 85 ntBASIC1.3□□□□□ -2.2
LMCD1Q9NZU5 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
LMCD1Q9NZU5 SNORA63.6-201ENST00000364921 119 ntBASIC1.29□□□□□ -2.2
LMCD1Q9NZU5 MIR582-201ENST00000365731 98 ntBASIC1.29□□□□□ -2.2
LMCD1Q9NZU5 SNORA15B-2-201ENST00000384058 135 ntBASIC1.29□□□□□ -2.2
LMCD1Q9NZU5 SNORA15B-1-201ENST00000384334 135 ntBASIC1.29□□□□□ -2.2
LMCD1Q9NZU5 RNA5SP484-201ENST00000458857 111 ntBASIC1.29□□□□□ -2.2
LMCD1Q9NZU5 RNU6-1110P-201ENST00000516462 101 ntBASIC1.29□□□□□ -2.2
LMCD1Q9NZU5 RNU6-135P-201ENST00000516769 101 ntBASIC1.29□□□□□ -2.2
LMCD1Q9NZU5 AC068338.1-201ENST00000565567 176 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 222.6 ms