Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MIR6888-201ENST00000621977 67 ntBASIC-1.18□□□□□ -2.6
USP42Q9H9J4 Y_RNA.240-201ENST00000364469 95 ntBASIC-1.19□□□□□ -2.6
USP42Q9H9J4 HLA-S-202ENST00000425174 53 ntBASIC-1.19□□□□□ -2.6
USP42Q9H9J4 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.19□□□□□ -2.6
USP42Q9H9J4 RNY4P6-201ENST00000363667 96 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 RNU6-746P-201ENST00000384112 109 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 MIR606-201ENST00000384851 96 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 MIR548A1-201ENST00000385041 97 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 MIR527-201ENST00000385244 85 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 MIR548U-201ENST00000390728 81 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 MIR1285-2-201ENST00000408311 88 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 SNORD75.2-201ENST00000408784 58 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 RNU6-1135P-201ENST00000411083 103 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 AL158147.1-201ENST00000443970 75 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 RNU7-24P-201ENST00000458867 62 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 MIR3064-201ENST00000581130 66 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 AC072026.1-201ENST00000605023 201 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 AC062037.2-201ENST00000610137 73 ntBASIC-1.2□□□□□ -2.6
USP42Q9H9J4 Y_RNA.145-201ENST00000363527 102 ntBASIC-1.21□□□□□ -2.6
USP42Q9H9J4 Y_RNA.272-201ENST00000364696 102 ntBASIC-1.21□□□□□ -2.6
USP42Q9H9J4 SNORA20.1-201ENST00000364790 130 ntBASIC-1.21□□□□□ -2.6
USP42Q9H9J4 RNU6-867P-201ENST00000364956 107 ntBASIC-1.21□□□□□ -2.6
USP42Q9H9J4 MIR889-201ENST00000401280 79 ntBASIC-1.21□□□□□ -2.6
USP42Q9H9J4 MIR5591-201ENST00000578248 65 ntBASIC-1.21□□□□□ -2.6
USP42Q9H9J4 MIR365A-201ENST00000362260 87 ntBASIC-1.22□□□□□ -2.61
USP42Q9H9J4 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.22□□□□□ -2.61
USP42Q9H9J4 RNU6-151P-201ENST00000364158 107 ntBASIC-1.22□□□□□ -2.61
USP42Q9H9J4 MIR3613-201ENST00000579844 87 ntBASIC-1.22□□□□□ -2.61
USP42Q9H9J4 AP001340.1-201ENST00000624405 217 ntBASIC-1.22□□□□□ -2.61
USP42Q9H9J4 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.23□□□□□ -2.61
USP42Q9H9J4 RNU6-576P-201ENST00000390854 102 ntBASIC-1.23□□□□□ -2.61
USP42Q9H9J4 SNORD90-201ENST00000391145 111 ntBASIC-1.23□□□□□ -2.61
USP42Q9H9J4 RNU2-51P-201ENST00000410708 197 ntBASIC-1.23□□□□□ -2.61
USP42Q9H9J4 MTCYBP9-201ENST00000431021 303 ntBASIC-1.23□□□□□ -2.61
USP42Q9H9J4 RNU6-158P-201ENST00000517104 100 ntBASIC-1.23□□□□□ -2.61
USP42Q9H9J4 MIR4770-201ENST00000579149 58 ntBASIC-1.23□□□□□ -2.61
USP42Q9H9J4 AC104996.3-201ENST00000590718 94 ntBASIC-1.23□□□□□ -2.61
USP42Q9H9J4 MIR6502-201ENST00000617296 76 ntBASIC-1.23□□□□□ -2.61
USP42Q9H9J4 Y_RNA.778-201ENST00000620203 90 ntBASIC-1.23□□□□□ -2.61
USP42Q9H9J4 RNU6-924P-201ENST00000362926 108 ntBASIC-1.24□□□□□ -2.61
USP42Q9H9J4 RNU6-832P-201ENST00000363319 107 ntBASIC-1.24□□□□□ -2.61
USP42Q9H9J4 RNU6-226P-201ENST00000363778 107 ntBASIC-1.24□□□□□ -2.61
USP42Q9H9J4 Y_RNA.459-201ENST00000384251 102 ntBASIC-1.24□□□□□ -2.61
USP42Q9H9J4 MIR1255B2-201ENST00000408618 67 ntBASIC-1.24□□□□□ -2.61
USP42Q9H9J4 SNORD63.1-201ENST00000516178 80 ntBASIC-1.24□□□□□ -2.61
USP42Q9H9J4 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.24□□□□□ -2.61
USP42Q9H9J4 MIR4694-201ENST00000578534 80 ntBASIC-1.24□□□□□ -2.61
USP42Q9H9J4 MIR1246-201ENST00000636535 73 ntBASIC-1.24□□□□□ -2.61
USP42Q9H9J4 SNORA33.1-201ENST00000364957 130 ntBASIC-1.25□□□□□ -2.61
USP42Q9H9J4 RNU6-260P-201ENST00000384092 107 ntBASIC-1.25□□□□□ -2.61
USP42Q9H9J4 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.25□□□□□ -2.61
USP42Q9H9J4 snoU13.17-201ENST00000458802 104 ntBASIC-1.25□□□□□ -2.61
USP42Q9H9J4 RNA5SP147-201ENST00000516493 109 ntBASIC-1.25□□□□□ -2.61
USP42Q9H9J4 RNU6-861P-201ENST00000516745 106 ntBASIC-1.25□□□□□ -2.61
USP42Q9H9J4 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.25□□□□□ -2.61
USP42Q9H9J4 MIR6129-201ENST00000616087 109 ntBASIC-1.25□□□□□ -2.61
USP42Q9H9J4 RNA5SP26-201ENST00000362406 119 ntBASIC-1.26□□□□□ -2.61
USP42Q9H9J4 RNU6-682P-201ENST00000363843 106 ntBASIC-1.26□□□□□ -2.61
USP42Q9H9J4 Y_RNA.307-201ENST00000365022 117 ntBASIC-1.26□□□□□ -2.61
USP42Q9H9J4 RNU6-382P-201ENST00000365181 106 ntBASIC-1.26□□□□□ -2.61
USP42Q9H9J4 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.26□□□□□ -2.61
USP42Q9H9J4 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.26□□□□□ -2.61
USP42Q9H9J4 RNU6-738P-201ENST00000384531 106 ntBASIC-1.26□□□□□ -2.61
USP42Q9H9J4 SNORA26.4-201ENST00000391188 123 ntBASIC-1.26□□□□□ -2.61
USP42Q9H9J4 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.26□□□□□ -2.61
USP42Q9H9J4 SNORD4B-201ENST00000459083 72 ntBASIC-1.26□□□□□ -2.61
USP42Q9H9J4 MIR4520-1-201ENST00000582609 70 ntBASIC-1.26□□□□□ -2.61
USP42Q9H9J4 AC025166.1-201ENST00000612411 163 ntBASIC-1.26□□□□□ -2.61
USP42Q9H9J4 RNU6-797P-201ENST00000363101 109 ntBASIC-1.27□□□□□ -2.61
USP42Q9H9J4 SNORD115-33-201ENST00000363723 82 ntBASIC-1.27□□□□□ -2.61
USP42Q9H9J4 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.27□□□□□ -2.61
USP42Q9H9J4 MIR203A-201ENST00000384836 110 ntBASIC-1.27□□□□□ -2.61
USP42Q9H9J4 RNA5SP292-201ENST00000390974 118 ntBASIC-1.27□□□□□ -2.61
USP42Q9H9J4 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.27□□□□□ -2.61
USP42Q9H9J4 MIR4441-201ENST00000582623 100 ntBASIC-1.27□□□□□ -2.61
USP42Q9H9J4 MIR548Z-201ENST00000584743 97 ntBASIC-1.27□□□□□ -2.61
USP42Q9H9J4 AC006254.2-201ENST00000603259 279 ntBASIC-1.27□□□□□ -2.61
USP42Q9H9J4 AC091912.2-201ENST00000624798 167 ntBASIC-1.27□□□□□ -2.61
USP42Q9H9J4 RNU6-644P-201ENST00000391155 98 ntBASIC-1.28□□□□□ -2.61
USP42Q9H9J4 MIR513C-201ENST00000401352 84 ntBASIC-1.28□□□□□ -2.61
USP42Q9H9J4 RNU4-61P-201ENST00000411243 107 ntBASIC-1.28□□□□□ -2.61
USP42Q9H9J4 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.28□□□□□ -2.61
USP42Q9H9J4 CYP3A54P-201ENST00000566950 75 ntBASIC-1.28□□□□□ -2.61
USP42Q9H9J4 AL035470.1-201ENST00000622571 220 ntBASIC-1.28□□□□□ -2.61
USP42Q9H9J4 RNY3P2-201ENST00000362918 102 ntBASIC-1.29□□□□□ -2.62
USP42Q9H9J4 SNORD115-22-201ENST00000364456 82 ntBASIC-1.29□□□□□ -2.62
USP42Q9H9J4 Y_RNA.297-201ENST00000364950 91 ntBASIC-1.29□□□□□ -2.62
USP42Q9H9J4 SNORD58C-201ENST00000365223 64 ntBASIC-1.29□□□□□ -2.62
USP42Q9H9J4 AL117351.2-201ENST00000513571 157 ntBASIC-1.29□□□□□ -2.62
USP42Q9H9J4 AC103810.7-201ENST00000607821 91 ntBASIC-1.29□□□□□ -2.62
USP42Q9H9J4 MIR6509-201ENST00000614603 85 ntBASIC-1.29□□□□□ -2.62
USP42Q9H9J4 MIR4773-1-201ENST00000637203 78 ntBASIC-1.29□□□□□ -2.62
USP42Q9H9J4 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.3□□□□□ -2.62
USP42Q9H9J4 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.3□□□□□ -2.62
USP42Q9H9J4 MTATP6P29-201ENST00000415057 132 ntBASIC-1.3□□□□□ -2.62
USP42Q9H9J4 Y_RNA.662-201ENST00000516028 97 ntBASIC-1.3□□□□□ -2.62
USP42Q9H9J4 RNU6-62P-201ENST00000516526 102 ntBASIC-1.3□□□□□ -2.62
USP42Q9H9J4 MIR4439-201ENST00000583746 80 ntBASIC-1.3□□□□□ -2.62
USP42Q9H9J4 U7.2-201ENST00000607576 63 ntBASIC-1.3□□□□□ -2.62
USP42Q9H9J4 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.3□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms