Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNORD44.1-201ENST00000363202 61 ntBASIC0.62□□□□□ -2.31
CCDC140Q96MF4 SNORA68.3-201ENST00000515906 83 ntBASIC0.62□□□□□ -2.31
CCDC140Q96MF4 RNA5SP480-201ENST00000516840 109 ntBASIC0.62□□□□□ -2.31
CCDC140Q96MF4 RNU6-495P-201ENST00000362995 107 ntBASIC0.61□□□□□ -2.31
CCDC140Q96MF4 RNU6-681P-201ENST00000364012 104 ntBASIC0.61□□□□□ -2.31
CCDC140Q96MF4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.61□□□□□ -2.31
CCDC140Q96MF4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.61□□□□□ -2.31
CCDC140Q96MF4 U6.81-201ENST00000612550 106 ntBASIC0.61□□□□□ -2.31
CCDC140Q96MF4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.61□□□□□ -2.31
CCDC140Q96MF4 PVT1_3.1-201ENST00000620853 95 ntBASIC0.61□□□□□ -2.31
CCDC140Q96MF4 Y_RNA.540-201ENST00000384638 111 ntBASIC0.6□□□□□ -2.31
CCDC140Q96MF4 MIR7-2-201ENST00000384970 110 ntBASIC0.6□□□□□ -2.31
CCDC140Q96MF4 RNU6-1275P-201ENST00000391087 107 ntBASIC0.6□□□□□ -2.31
CCDC140Q96MF4 Y_RNA.606-201ENST00000410579 103 ntBASIC0.6□□□□□ -2.31
CCDC140Q96MF4 SNORD42B-201ENST00000458893 67 ntBASIC0.6□□□□□ -2.31
CCDC140Q96MF4 RNU6-857P-201ENST00000515893 110 ntBASIC0.6□□□□□ -2.31
CCDC140Q96MF4 MIR6755-201ENST00000619993 66 ntBASIC0.6□□□□□ -2.31
CCDC140Q96MF4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.6□□□□□ -2.31
CCDC140Q96MF4 MIR103A1-201ENST00000362165 78 ntBASIC0.59□□□□□ -2.31
CCDC140Q96MF4 Y_RNA.36-201ENST00000362602 112 ntBASIC0.59□□□□□ -2.31
CCDC140Q96MF4 SNORD114-26-201ENST00000363543 72 ntBASIC0.59□□□□□ -2.31
CCDC140Q96MF4 MIR146A-201ENST00000385201 99 ntBASIC0.59□□□□□ -2.31
CCDC140Q96MF4 MIR760-201ENST00000390220 80 ntBASIC0.59□□□□□ -2.31
CCDC140Q96MF4 RNU6-274P-201ENST00000459566 107 ntBASIC0.59□□□□□ -2.31
CCDC140Q96MF4 RNU6-303P-201ENST00000517091 106 ntBASIC0.59□□□□□ -2.31
CCDC140Q96MF4 RNU6-24P-201ENST00000384440 107 ntBASIC0.58□□□□□ -2.32
CCDC140Q96MF4 RNU6-279P-201ENST00000391297 101 ntBASIC0.58□□□□□ -2.32
CCDC140Q96MF4 SNORD75.2-201ENST00000408784 58 ntBASIC0.58□□□□□ -2.32
CCDC140Q96MF4 HMGN2P22-201ENST00000427588 175 ntBASIC0.58□□□□□ -2.32
CCDC140Q96MF4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.58□□□□□ -2.32
CCDC140Q96MF4 AL691482.2-201ENST00000457453 84 ntBASIC0.58□□□□□ -2.32
CCDC140Q96MF4 RNA5SP436-201ENST00000516020 115 ntBASIC0.58□□□□□ -2.32
CCDC140Q96MF4 RNU7-129P-201ENST00000516128 62 ntBASIC0.58□□□□□ -2.32
CCDC140Q96MF4 uc_338.10-201ENST00000621872 182 ntBASIC0.58□□□□□ -2.32
CCDC140Q96MF4 MIR6866-201ENST00000638146 69 ntBASIC0.58□□□□□ -2.32
CCDC140Q96MF4 Y_RNA.407-201ENST00000383986 113 ntBASIC0.57□□□□□ -2.32
CCDC140Q96MF4 RNU6-807P-201ENST00000516805 107 ntBASIC0.57□□□□□ -2.32
CCDC140Q96MF4 MIR548AE1-201ENST00000583292 70 ntBASIC0.57□□□□□ -2.32
CCDC140Q96MF4 Y_RNA.532-201ENST00000384590 113 ntBASIC0.56□□□□□ -2.32
CCDC140Q96MF4 MIR203A-201ENST00000384836 110 ntBASIC0.56□□□□□ -2.32
CCDC140Q96MF4 RNU6-330P-201ENST00000363015 107 ntBASIC0.55□□□□□ -2.32
CCDC140Q96MF4 MIR652-201ENST00000385278 98 ntBASIC0.55□□□□□ -2.32
CCDC140Q96MF4 RNU7-24P-201ENST00000458867 62 ntBASIC0.55□□□□□ -2.32
CCDC140Q96MF4 U7.6-201ENST00000610841 64 ntBASIC0.55□□□□□ -2.32
CCDC140Q96MF4 MIR6835-201ENST00000621552 64 ntBASIC0.55□□□□□ -2.32
CCDC140Q96MF4 MIR499B-201ENST00000636498 73 ntBASIC0.55□□□□□ -2.32
CCDC140Q96MF4 MIRLET7D-201ENST00000362263 87 ntBASIC0.54□□□□□ -2.32
CCDC140Q96MF4 Y_RNA.125-201ENST00000363371 111 ntBASIC0.54□□□□□ -2.32
CCDC140Q96MF4 SNORD114-4-201ENST00000363962 75 ntBASIC0.54□□□□□ -2.32
CCDC140Q96MF4 RNU6-154P-201ENST00000384306 106 ntBASIC0.54□□□□□ -2.32
CCDC140Q96MF4 RNA5SP395-201ENST00000516567 118 ntBASIC0.54□□□□□ -2.32
CCDC140Q96MF4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.54□□□□□ -2.32
CCDC140Q96MF4 MIR6509-201ENST00000614603 85 ntBASIC0.54□□□□□ -2.32
CCDC140Q96MF4 MIR1297-201ENST00000637311 77 ntBASIC0.54□□□□□ -2.32
CCDC140Q96MF4 Y_RNA.244-201ENST00000364484 109 ntBASIC0.53□□□□□ -2.32
CCDC140Q96MF4 MIR216A-201ENST00000385063 110 ntBASIC0.53□□□□□ -2.32
CCDC140Q96MF4 SCARNA18B-201ENST00000458806 135 ntBASIC0.53□□□□□ -2.32
CCDC140Q96MF4 RNU6-863P-201ENST00000515989 104 ntBASIC0.53□□□□□ -2.32
CCDC140Q96MF4 MIR4714-201ENST00000580728 77 ntBASIC0.53□□□□□ -2.32
CCDC140Q96MF4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.52□□□□□ -2.33
CCDC140Q96MF4 RNU6-1039P-201ENST00000383931 107 ntBASIC0.52□□□□□ -2.33
CCDC140Q96MF4 SNORA8.1-201ENST00000384250 140 ntBASIC0.52□□□□□ -2.33
CCDC140Q96MF4 MIR508-201ENST00000384857 115 ntBASIC0.52□□□□□ -2.33
CCDC140Q96MF4 MIR516B1-201ENST00000385211 90 ntBASIC0.52□□□□□ -2.33
CCDC140Q96MF4 RN7SL793P-201ENST00000583259 296 ntBASIC0.52□□□□□ -2.33
CCDC140Q96MF4 RNA5SP128-201ENST00000365305 116 ntBASIC0.51□□□□□ -2.33
CCDC140Q96MF4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.51□□□□□ -2.33
CCDC140Q96MF4 AC074348.1-201ENST00000426503 132 ntBASIC0.51□□□□□ -2.33
CCDC140Q96MF4 AC073261.1-201ENST00000429409 121 ntBASIC0.51□□□□□ -2.33
CCDC140Q96MF4 RNU6-848P-201ENST00000515948 107 ntBASIC0.51□□□□□ -2.33
CCDC140Q96MF4 RNU6-617P-201ENST00000516147 107 ntBASIC0.51□□□□□ -2.33
CCDC140Q96MF4 RNU6-473P-201ENST00000516164 107 ntBASIC0.51□□□□□ -2.33
CCDC140Q96MF4 RNU6-1049P-201ENST00000516414 107 ntBASIC0.51□□□□□ -2.33
CCDC140Q96MF4 MIR6779-201ENST00000617283 64 ntBASIC0.51□□□□□ -2.33
CCDC140Q96MF4 MIR6513-201ENST00000621188 64 ntBASIC0.51□□□□□ -2.33
CCDC140Q96MF4 Y_RNA.205-201ENST00000364128 113 ntBASIC0.5□□□□□ -2.33
CCDC140Q96MF4 MIR501-201ENST00000390204 84 ntBASIC0.5□□□□□ -2.33
CCDC140Q96MF4 RNA5SP62-201ENST00000363457 110 ntBASIC0.49□□□□□ -2.33
CCDC140Q96MF4 RNU6-990P-201ENST00000364385 104 ntBASIC0.49□□□□□ -2.33
CCDC140Q96MF4 RNU6-815P-201ENST00000384080 113 ntBASIC0.49□□□□□ -2.33
CCDC140Q96MF4 RNU6-260P-201ENST00000384092 107 ntBASIC0.49□□□□□ -2.33
CCDC140Q96MF4 MIR889-201ENST00000401280 79 ntBASIC0.49□□□□□ -2.33
CCDC140Q96MF4 MIR3675-201ENST00000583661 73 ntBASIC0.49□□□□□ -2.33
CCDC140Q96MF4 U7.4-201ENST00000614961 63 ntBASIC0.49□□□□□ -2.33
CCDC140Q96MF4 MIR664A-201ENST00000626086 82 ntBASIC0.49□□□□□ -2.33
CCDC140Q96MF4 SCARNA17.3-201ENST00000516381 125 ntBASIC0.48□□□□□ -2.33
CCDC140Q96MF4 MIR4677-201ENST00000584153 80 ntBASIC0.48□□□□□ -2.33
CCDC140Q96MF4 Y_RNA.788-201ENST00000622394 112 ntBASIC0.48□□□□□ -2.33
CCDC140Q96MF4 SNORA9.1-201ENST00000362412 131 ntBASIC0.47□□□□□ -2.33
CCDC140Q96MF4 RNA5SP147-201ENST00000516493 109 ntBASIC0.47□□□□□ -2.33
CCDC140Q96MF4 RNU6-638P-201ENST00000516582 104 ntBASIC0.47□□□□□ -2.33
CCDC140Q96MF4 AC084368.1-201ENST00000620935 65 ntBASIC0.47□□□□□ -2.33
CCDC140Q96MF4 RNA5SP347-201ENST00000362445 119 ntBASIC0.46□□□□□ -2.34
CCDC140Q96MF4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.46□□□□□ -2.34
CCDC140Q96MF4 MIR936-201ENST00000401264 98 ntBASIC0.46□□□□□ -2.34
CCDC140Q96MF4 RNU6-752P-201ENST00000516376 102 ntBASIC0.46□□□□□ -2.34
CCDC140Q96MF4 RNU6-70P-201ENST00000516438 60 ntBASIC0.46□□□□□ -2.34
CCDC140Q96MF4 AC145423.2-201ENST00000610631 239 ntBASIC0.46□□□□□ -2.34
CCDC140Q96MF4 MIR92A1-201ENST00000385233 78 ntBASIC0.45□□□□□ -2.34
CCDC140Q96MF4 MIR548AD-201ENST00000584780 82 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 175.1 ms