Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 RNU6-656P-201ENST00000516785 107 ntBASIC1.63□□□□□ -2.15
HLA-CQ95604 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.63□□□□□ -2.15
HLA-CQ95604 MIR96-201ENST00000362288 78 ntBASIC1.62□□□□□ -2.15
HLA-CQ95604 RNU1-124P-201ENST00000363861 145 ntBASIC1.62□□□□□ -2.15
HLA-CQ95604 RNU6-716P-201ENST00000365621 103 ntBASIC1.62□□□□□ -2.15
HLA-CQ95604 RNU6-1162P-201ENST00000384443 104 ntBASIC1.62□□□□□ -2.15
HLA-CQ95604 MIR598-201ENST00000384868 97 ntBASIC1.62□□□□□ -2.15
HLA-CQ95604 SNORA40.17-201ENST00000517256 115 ntBASIC1.62□□□□□ -2.15
HLA-CQ95604 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
HLA-CQ95604 Y_RNA.374-201ENST00000365606 101 ntBASIC1.61□□□□□ -2.15
HLA-CQ95604 MIR521-2-201ENST00000384818 87 ntBASIC1.6□□□□□ -2.15
HLA-CQ95604 MIR1323-201ENST00000408090 73 ntBASIC1.6□□□□□ -2.15
HLA-CQ95604 RNU6-1089P-201ENST00000516473 104 ntBASIC1.6□□□□□ -2.15
HLA-CQ95604 RNU6-1223P-201ENST00000517124 104 ntBASIC1.6□□□□□ -2.15
HLA-CQ95604 MIR618-201ENST00000385287 98 ntBASIC1.59□□□□□ -2.15
HLA-CQ95604 RNA5SP255-201ENST00000516370 107 ntBASIC1.59□□□□□ -2.15
HLA-CQ95604 RNU6-990P-201ENST00000364385 104 ntBASIC1.58□□□□□ -2.16
HLA-CQ95604 RNU1-93P-201ENST00000364704 169 ntBASIC1.58□□□□□ -2.16
HLA-CQ95604 SNORD124-201ENST00000459577 104 ntBASIC1.58□□□□□ -2.16
HLA-CQ95604 SNORA15B-2-201ENST00000384058 135 ntBASIC1.57□□□□□ -2.16
HLA-CQ95604 SNORA15B-1-201ENST00000384334 135 ntBASIC1.57□□□□□ -2.16
HLA-CQ95604 RNA5SP299-201ENST00000391203 116 ntBASIC1.57□□□□□ -2.16
HLA-CQ95604 RNA5SP484-201ENST00000458857 111 ntBASIC1.57□□□□□ -2.16
HLA-CQ95604 MIR520E-201ENST00000384867 87 ntBASIC1.56□□□□□ -2.16
HLA-CQ95604 RNU6-141P-201ENST00000410499 105 ntBASIC1.56□□□□□ -2.16
HLA-CQ95604 AL354695.1-201ENST00000427935 228 ntBASIC1.56□□□□□ -2.16
HLA-CQ95604 RPS29P1-201ENST00000465274 159 ntBASIC1.56□□□□□ -2.16
HLA-CQ95604 RNU6-614P-201ENST00000384369 107 ntBASIC1.55□□□□□ -2.16
HLA-CQ95604 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.55□□□□□ -2.16
HLA-CQ95604 RPS29P23-201ENST00000458635 123 ntBASIC1.55□□□□□ -2.16
HLA-CQ95604 RNA5SP227-201ENST00000516184 113 ntBASIC1.55□□□□□ -2.16
HLA-CQ95604 U6.59-201ENST00000615686 107 ntBASIC1.55□□□□□ -2.16
HLA-CQ95604 Y_RNA.407-201ENST00000383986 113 ntBASIC1.54□□□□□ -2.16
HLA-CQ95604 RNU6-997P-201ENST00000384725 107 ntBASIC1.54□□□□□ -2.16
HLA-CQ95604 MIR633-201ENST00000384821 98 ntBASIC1.54□□□□□ -2.16
HLA-CQ95604 MIR758-201ENST00000390227 88 ntBASIC1.54□□□□□ -2.16
HLA-CQ95604 RNA5SP147-201ENST00000516493 109 ntBASIC1.54□□□□□ -2.16
HLA-CQ95604 RNU5B-6P-201ENST00000516765 68 ntBASIC1.54□□□□□ -2.16
HLA-CQ95604 RNA5SP404-201ENST00000517118 132 ntBASIC1.54□□□□□ -2.16
HLA-CQ95604 MIR151B-201ENST00000584249 96 ntBASIC1.54□□□□□ -2.16
HLA-CQ95604 MIR18A-201ENST00000362310 71 ntBASIC1.53□□□□□ -2.16
HLA-CQ95604 SNORA25.8-201ENST00000364831 128 ntBASIC1.53□□□□□ -2.16
HLA-CQ95604 MIR6788-201ENST00000618842 66 ntBASIC1.53□□□□□ -2.16
HLA-CQ95604 uc_338.10-201ENST00000621872 182 ntBASIC1.53□□□□□ -2.16
HLA-CQ95604 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.53□□□□□ -2.16
HLA-CQ95604 SCARNA17.3-201ENST00000516381 125 ntBASIC1.52□□□□□ -2.17
HLA-CQ95604 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.52□□□□□ -2.17
HLA-CQ95604 RNU6-92P-201ENST00000605893 104 ntBASIC1.52□□□□□ -2.17
HLA-CQ95604 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.52□□□□□ -2.17
HLA-CQ95604 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
HLA-CQ95604 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
HLA-CQ95604 RNA5SP192-201ENST00000364404 120 ntBASIC1.51□□□□□ -2.17
HLA-CQ95604 RNU6-122P-201ENST00000516818 107 ntBASIC1.51□□□□□ -2.17
HLA-CQ95604 MIR466-201ENST00000580653 84 ntBASIC1.51□□□□□ -2.17
HLA-CQ95604 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.51□□□□□ -2.17
HLA-CQ95604 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
HLA-CQ95604 MIR1304-201ENST00000408243 91 ntBASIC1.5□□□□□ -2.17
HLA-CQ95604 MIR548J-201ENST00000408833 112 ntBASIC1.5□□□□□ -2.17
HLA-CQ95604 Y_RNA.633-201ENST00000459107 95 ntBASIC1.5□□□□□ -2.17
HLA-CQ95604 AC021146.9-201ENST00000512503 156 ntBASIC1.5□□□□□ -2.17
HLA-CQ95604 RNA5SP268-201ENST00000516828 124 ntBASIC1.5□□□□□ -2.17
HLA-CQ95604 AL157398.1-201ENST00000452981 186 ntBASIC1.49□□□□□ -2.17
HLA-CQ95604 SNORD114-27-201ENST00000363766 70 ntBASIC1.48□□□□□ -2.17
HLA-CQ95604 SNORA63.6-201ENST00000364921 119 ntBASIC1.48□□□□□ -2.17
HLA-CQ95604 AC006210.1-201ENST00000424882 111 ntBASIC1.48□□□□□ -2.17
HLA-CQ95604 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
HLA-CQ95604 SNORD48-201ENST00000364953 64 ntBASIC1.47□□□□□ -2.17
HLA-CQ95604 SNORD99-201ENST00000408612 74 ntBASIC1.47□□□□□ -2.17
HLA-CQ95604 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.47□□□□□ -2.17
HLA-CQ95604 AC011195.1-201ENST00000578177 177 ntBASIC1.47□□□□□ -2.17
HLA-CQ95604 SNORA36.1-201ENST00000363424 132 ntBASIC1.46□□□□□ -2.18
HLA-CQ95604 RNU6-829P-201ENST00000363700 112 ntBASIC1.46□□□□□ -2.18
HLA-CQ95604 SNORD110-201ENST00000408189 75 ntBASIC1.46□□□□□ -2.18
HLA-CQ95604 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.46□□□□□ -2.18
HLA-CQ95604 RNA5SP94-201ENST00000516917 108 ntBASIC1.46□□□□□ -2.18
HLA-CQ95604 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.45□□□□□ -2.18
HLA-CQ95604 RNA5SP363-201ENST00000365072 115 ntBASIC1.45□□□□□ -2.18
HLA-CQ95604 MIR5706-201ENST00000579841 80 ntBASIC1.45□□□□□ -2.18
HLA-CQ95604 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
HLA-CQ95604 RNU6-1079P-201ENST00000362861 110 ntBASIC1.44□□□□□ -2.18
HLA-CQ95604 RNU6-698P-201ENST00000363523 107 ntBASIC1.44□□□□□ -2.18
HLA-CQ95604 RNU6-34P-201ENST00000364874 107 ntBASIC1.44□□□□□ -2.18
HLA-CQ95604 SNORD113-2-201ENST00000391082 72 ntBASIC1.44□□□□□ -2.18
HLA-CQ95604 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.44□□□□□ -2.18
HLA-CQ95604 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.43□□□□□ -2.18
HLA-CQ95604 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.43□□□□□ -2.18
HLA-CQ95604 MIR517B-201ENST00000385102 67 ntBASIC1.43□□□□□ -2.18
HLA-CQ95604 MIR652-201ENST00000385278 98 ntBASIC1.43□□□□□ -2.18
HLA-CQ95604 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.43□□□□□ -2.18
HLA-CQ95604 MIR3938-201ENST00000582157 103 ntBASIC1.43□□□□□ -2.18
HLA-CQ95604 Y_RNA.236-201ENST00000364427 111 ntBASIC1.42□□□□□ -2.18
HLA-CQ95604 MIR7107-201ENST00000611489 80 ntBASIC1.42□□□□□ -2.18
HLA-CQ95604 RNU7-174P-201ENST00000516248 59 ntBASIC1.41□□□□□ -2.18
HLA-CQ95604 U2.7-201ENST00000619197 100 ntBASIC1.41□□□□□ -2.18
HLA-CQ95604 MIR3660-201ENST00000584845 100 ntBASIC1.4□□□□□ -2.19
HLA-CQ95604 MIR26B-201ENST00000362251 77 ntBASIC1.39□□□□□ -2.19
HLA-CQ95604 SNORD60.1-201ENST00000362451 73 ntBASIC1.39□□□□□ -2.19
HLA-CQ95604 Y_RNA.125-201ENST00000363371 111 ntBASIC1.39□□□□□ -2.19
HLA-CQ95604 SNORD2-201ENST00000459163 69 ntBASIC1.39□□□□□ -2.19
HLA-CQ95604 MIR548V-201ENST00000584165 80 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 1038.5 ms