Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 Y_RNA.64-201ENST00000362845 102 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 RNU6-238P-201ENST00000363313 106 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 MTATP6P21-201ENST00000440681 189 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 MIR3064-201ENST00000581130 66 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 AC080013.6-201ENST00000606185 215 ntBASIC-1.47□□□□□ -2.64
CHD9Q3L8U1 SNORD115-22-201ENST00000364456 82 ntBASIC-1.47□□□□□ -2.65
CHD9Q3L8U1 RNU6-290P-201ENST00000365212 101 ntBASIC-1.47□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.463-201ENST00000384271 102 ntBASIC-1.47□□□□□ -2.65
CHD9Q3L8U1 RNU6-630P-201ENST00000391258 106 ntBASIC-1.47□□□□□ -2.65
CHD9Q3L8U1 SNORA40.15-201ENST00000516884 107 ntBASIC-1.47□□□□□ -2.65
CHD9Q3L8U1 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.47□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.166-201ENST00000363730 102 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 SNORD114-13-201ENST00000364377 74 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 RNU6-310P-201ENST00000384655 107 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.793-201ENST00000411222 111 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 AL513043.2-201ENST00000573941 143 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 AL132765.2-201ENST00000610812 351 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 RNY4P14-201ENST00000363656 96 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 RNU6-141P-201ENST00000410499 105 ntBASIC-1.48□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 RNU6-768P-201ENST00000384683 107 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 MIR548A3-201ENST00000385297 97 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 MIR1302-6-201ENST00000408466 90 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 MIR548AG1-201ENST00000579932 66 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.187-201ENST00000363918 113 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 SNORD45B-201ENST00000364617 72 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 RNU7-85P-201ENST00000458851 63 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 AL035461.1-201ENST00000421490 332 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 AC104996.3-201ENST00000590718 94 ntBASIC-1.49□□□□□ -2.65
CHD9Q3L8U1 RNU5F-1-201ENST00000362507 117 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.84-201ENST00000363011 104 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 RNU6-151P-201ENST00000364158 107 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 RNU6-718P-201ENST00000516166 105 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 RNU6-506P-201ENST00000516553 94 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 SNORD116.3-201ENST00000517176 78 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.259-201ENST00000364619 101 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 RNU6-563P-201ENST00000364872 108 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.387-201ENST00000383918 102 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 RNU6-1289P-201ENST00000384431 106 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 MTND3P2-201ENST00000438452 342 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.5□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.51-201ENST00000362725 102 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 RNU6-478P-201ENST00000363904 110 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 AC092794.1-201ENST00000612734 582 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 U2.18-201ENST00000622185 84 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.183-201ENST00000363882 113 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.248-201ENST00000364501 109 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 RNU6-129P-201ENST00000391022 107 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 RNU6-656P-201ENST00000516785 107 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 AC130289.1-201ENST00000577321 73 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 AC078883.4-201ENST00000623218 367 ntBASIC-1.51□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.9-201ENST00000362354 101 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.82-201ENST00000363000 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.92-201ENST00000363043 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-340P-201ENST00000364005 107 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.235-201ENST00000364412 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 SNORA33.1-201ENST00000364957 130 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.306-201ENST00000365015 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.308-201ENST00000365043 101 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.312-201ENST00000365089 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.322-201ENST00000365151 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-1044P-201ENST00000384755 107 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-816P-201ENST00000390914 107 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-1268P-201ENST00000391214 107 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-1239P-201ENST00000391310 107 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.650-201ENST00000459002 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.777-201ENST00000516982 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.771-201ENST00000598668 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.789-201ENST00000622480 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-508P-201ENST00000363231 103 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 SNORD116-10-201ENST00000363791 102 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 RNU6-326P-201ENST00000365480 107 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 MIR548P-201ENST00000408336 84 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 MIR548Q-201ENST00000408404 100 ntBASIC-1.52□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.16-201ENST00000362421 102 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.266-201ENST00000364678 96 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 SNORD116-2-201ENST00000384274 95 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.401-201ENST00000383965 117 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 MIR577-201ENST00000385196 96 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 RNU6-823P-201ENST00000391042 103 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 Y_RNA.651-201ENST00000459380 103 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 U4.4-201ENST00000620626 117 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 MIR6844-201ENST00000637122 62 ntBASIC-1.53□□□□□ -2.65
CHD9Q3L8U1 SNORA75.5-201ENST00000391291 81 ntBASIC-1.53□□□□□ -2.66
CHD9Q3L8U1 U4.5-201ENST00000617137 123 ntBASIC-1.53□□□□□ -2.66
CHD9Q3L8U1 MIR379-201ENST00000362218 67 ntBASIC-1.54□□□□□ -2.66
CHD9Q3L8U1 snoU13.10-201ENST00000459301 103 ntBASIC-1.54□□□□□ -2.66
CHD9Q3L8U1 MTND3P3-201ENST00000505004 126 ntBASIC-1.54□□□□□ -2.66
CHD9Q3L8U1 SNORA18.5-201ENST00000516616 101 ntBASIC-1.54□□□□□ -2.66
CHD9Q3L8U1 MIR3974-201ENST00000637126 96 ntBASIC-1.54□□□□□ -2.66
CHD9Q3L8U1 Y_RNA.155-201ENST00000363632 101 ntBASIC-1.54□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms