Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 Y_RNA.248-201ENST00000364501 109 ntBASIC-1.4□□□□□ -2.63
CHD3Q12873 RNY4P28-201ENST00000365281 93 ntBASIC-1.4□□□□□ -2.63
CHD3Q12873 RNU6-696P-201ENST00000390834 107 ntBASIC-1.4□□□□□ -2.63
CHD3Q12873 AC113195.1-201ENST00000579952 141 ntBASIC-1.4□□□□□ -2.63
CHD3Q12873 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.4□□□□□ -2.63
CHD3Q12873 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.41□□□□□ -2.64
CHD3Q12873 RPL35AP4-201ENST00000412007 102 ntBASIC-1.41□□□□□ -2.64
CHD3Q12873 AL021921.1-201ENST00000442774 93 ntBASIC-1.41□□□□□ -2.64
CHD3Q12873 RNY3P15-201ENST00000516297 97 ntBASIC-1.41□□□□□ -2.64
CHD3Q12873 SNORA75.5-201ENST00000391291 81 ntBASIC-1.42□□□□□ -2.64
CHD3Q12873 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.42□□□□□ -2.64
CHD3Q12873 RNA5SP272-201ENST00000516095 111 ntBASIC-1.42□□□□□ -2.64
CHD3Q12873 MIR3064-201ENST00000581130 66 ntBASIC-1.42□□□□□ -2.64
CHD3Q12873 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.42□□□□□ -2.64
CHD3Q12873 Y_RNA.19-201ENST00000362462 99 ntBASIC-1.42□□□□□ -2.64
CHD3Q12873 RNU6-824P-201ENST00000363724 104 ntBASIC-1.42□□□□□ -2.64
CHD3Q12873 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.42□□□□□ -2.64
CHD3Q12873 MIR548D2-201ENST00000384955 97 ntBASIC-1.42□□□□□ -2.64
CHD3Q12873 MIR3123-201ENST00000583417 75 ntBASIC-1.42□□□□□ -2.64
CHD3Q12873 MIR548AM-201ENST00000584298 74 ntBASIC-1.42□□□□□ -2.64
CHD3Q12873 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-1.42□□□□□ -2.64
CHD3Q12873 MIR4773-1-201ENST00000637203 78 ntBASIC-1.42□□□□□ -2.64
CHD3Q12873 Y_RNA.632-201ENST00000459189 102 ntBASIC-1.43□□□□□ -2.64
CHD3Q12873 AC006254.2-201ENST00000603259 279 ntBASIC-1.43□□□□□ -2.64
CHD3Q12873 Y_RNA.198-201ENST00000364013 98 ntBASIC-1.44□□□□□ -2.64
CHD3Q12873 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.44□□□□□ -2.64
CHD3Q12873 MIR496-201ENST00000385226 102 ntBASIC-1.44□□□□□ -2.64
CHD3Q12873 DNAJC19P2-201ENST00000593340 302 ntBASIC-1.44□□□□□ -2.64
CHD3Q12873 Y_RNA.29-201ENST00000362570 113 ntBASIC-1.44□□□□□ -2.64
CHD3Q12873 RNU6-681P-201ENST00000364012 104 ntBASIC-1.44□□□□□ -2.64
CHD3Q12873 Y_RNA.237-201ENST00000364439 102 ntBASIC-1.44□□□□□ -2.64
CHD3Q12873 MIR1252-201ENST00000408861 65 ntBASIC-1.44□□□□□ -2.64
CHD3Q12873 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.44□□□□□ -2.64
CHD3Q12873 Y_RNA.160-201ENST00000363677 92 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 RNY1P11-201ENST00000363759 113 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 Y_RNA.505-201ENST00000384489 102 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 RNU6-258P-201ENST00000390884 101 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 MIR1302-6-201ENST00000408466 90 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 SNORA7.5-201ENST00000410672 110 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 AL118496.2-201ENST00000448300 230 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 Y_RNA.690-201ENST00000516603 95 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 RNU6-656P-201ENST00000516785 107 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 MIR3613-201ENST00000579844 87 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 U2.14-201ENST00000615943 113 ntBASIC-1.45□□□□□ -2.64
CHD3Q12873 RNA5SP405-201ENST00000363059 114 ntBASIC-1.46□□□□□ -2.64
CHD3Q12873 Y_RNA.277-201ENST00000364754 102 ntBASIC-1.46□□□□□ -2.64
CHD3Q12873 MIR548A3-201ENST00000385297 97 ntBASIC-1.46□□□□□ -2.64
CHD3Q12873 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.46□□□□□ -2.64
CHD3Q12873 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.46□□□□□ -2.64
CHD3Q12873 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.46□□□□□ -2.64
CHD3Q12873 AP000770.2-201ENST00000623694 100 ntBASIC-1.46□□□□□ -2.64
CHD3Q12873 MIR369-201ENST00000362155 70 ntBASIC-1.47□□□□□ -2.64
CHD3Q12873 RNA5SP93-201ENST00000362525 114 ntBASIC-1.47□□□□□ -2.64
CHD3Q12873 Y_RNA.182-201ENST00000363880 111 ntBASIC-1.47□□□□□ -2.64
CHD3Q12873 RNU6-563P-201ENST00000364872 108 ntBASIC-1.47□□□□□ -2.64
CHD3Q12873 RNU6-980P-201ENST00000516925 103 ntBASIC-1.47□□□□□ -2.64
CHD3Q12873 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.47□□□□□ -2.64
CHD3Q12873 RNU6-478P-201ENST00000363904 110 ntBASIC-1.47□□□□□ -2.65
CHD3Q12873 RNU6-608P-201ENST00000383927 104 ntBASIC-1.47□□□□□ -2.65
CHD3Q12873 RNU6-1227P-201ENST00000383981 107 ntBASIC-1.47□□□□□ -2.65
CHD3Q12873 SNORA18.5-201ENST00000516616 101 ntBASIC-1.47□□□□□ -2.65
CHD3Q12873 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.47□□□□□ -2.65
CHD3Q12873 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.48□□□□□ -2.65
CHD3Q12873 SNORD45B-201ENST00000364617 72 ntBASIC-1.48□□□□□ -2.65
CHD3Q12873 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.48□□□□□ -2.65
CHD3Q12873 RNU6-988P-201ENST00000519081 107 ntBASIC-1.48□□□□□ -2.65
CHD3Q12873 RNU6-458P-201ENST00000384179 107 ntBASIC-1.49□□□□□ -2.65
CHD3Q12873 RNA5SP136-201ENST00000410906 107 ntBASIC-1.49□□□□□ -2.65
CHD3Q12873 SNORD19B-201ENST00000459623 84 ntBASIC-1.49□□□□□ -2.65
CHD3Q12873 MIR548AG1-201ENST00000579932 66 ntBASIC-1.49□□□□□ -2.65
CHD3Q12873 U6.58-201ENST00000613107 107 ntBASIC-1.49□□□□□ -2.65
CHD3Q12873 U4.4-201ENST00000620626 117 ntBASIC-1.49□□□□□ -2.65
CHD3Q12873 RNU6-275P-201ENST00000364910 107 ntBASIC-1.49□□□□□ -2.65
CHD3Q12873 SNORD42.2-201ENST00000365570 69 ntBASIC-1.49□□□□□ -2.65
CHD3Q12873 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.49□□□□□ -2.65
CHD3Q12873 MTND2P23-201ENST00000422990 651 ntBASIC-1.49□□□□□ -2.65
CHD3Q12873 MIR548Z-201ENST00000584743 97 ntBASIC-1.49□□□□□ -2.65
CHD3Q12873 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 Y_RNA.396-201ENST00000383949 103 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 RNU6-519P-201ENST00000410590 108 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 MTND1P19-201ENST00000511780 315 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 RNU6-518P-201ENST00000516056 96 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 RNU7-174P-201ENST00000516248 59 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 MIR23C-201ENST00000579846 100 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 RNU6-623P-201ENST00000363143 105 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 snoU13.10-201ENST00000459301 103 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 AC026407.1-201ENST00000518369 204 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 MIR3658-201ENST00000636291 56 ntBASIC-1.5□□□□□ -2.65
CHD3Q12873 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.51□□□□□ -2.65
CHD3Q12873 SNORD116-4-201ENST00000384733 96 ntBASIC-1.51□□□□□ -2.65
CHD3Q12873 SNORD127-201ENST00000458892 86 ntBASIC-1.51□□□□□ -2.65
CHD3Q12873 RNU5E-3P-201ENST00000515913 68 ntBASIC-1.51□□□□□ -2.65
CHD3Q12873 Y_RNA.721-201ENST00000517207 102 ntBASIC-1.51□□□□□ -2.65
CHD3Q12873 AC130289.1-201ENST00000577321 73 ntBASIC-1.51□□□□□ -2.65
CHD3Q12873 Y_RNA.384-201ENST00000383909 102 ntBASIC-1.52□□□□□ -2.65
CHD3Q12873 Y_RNA.483-201ENST00000384380 101 ntBASIC-1.52□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 207.7 ms