Protein–RNA interactions for Protein: P48378

RFX2, DNA-binding protein RFX2, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX2P48378 MIR216A-201ENST00000385063 110 ntBASIC0.34□□□□□ -2.36
RFX2P48378 AC073261.1-201ENST00000429409 121 ntBASIC0.34□□□□□ -2.36
RFX2P48378 Y_RNA.660-201ENST00000516002 120 ntBASIC0.34□□□□□ -2.36
RFX2P48378 RNA5SP220-201ENST00000516298 104 ntBASIC0.34□□□□□ -2.36
RFX2P48378 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.34□□□□□ -2.36
RFX2P48378 RNU6-228P-201ENST00000362700 106 ntBASIC0.33□□□□□ -2.36
RFX2P48378 Y_RNA.125-201ENST00000363371 111 ntBASIC0.33□□□□□ -2.36
RFX2P48378 Y_RNA.219-201ENST00000364232 113 ntBASIC0.33□□□□□ -2.36
RFX2P48378 Y_RNA.407-201ENST00000383986 113 ntBASIC0.33□□□□□ -2.36
RFX2P48378 SNORD75.2-201ENST00000408784 58 ntBASIC0.33□□□□□ -2.36
RFX2P48378 RNU6-848P-201ENST00000515948 107 ntBASIC0.33□□□□□ -2.36
RFX2P48378 RNU6-617P-201ENST00000516147 107 ntBASIC0.33□□□□□ -2.36
RFX2P48378 RNU6-473P-201ENST00000516164 107 ntBASIC0.33□□□□□ -2.36
RFX2P48378 RNU6-1049P-201ENST00000516414 107 ntBASIC0.33□□□□□ -2.36
RFX2P48378 RNU6-1223P-201ENST00000517124 104 ntBASIC0.33□□□□□ -2.36
RFX2P48378 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.33□□□□□ -2.36
RFX2P48378 U7.6-201ENST00000610841 64 ntBASIC0.33□□□□□ -2.36
RFX2P48378 U6.81-201ENST00000612550 106 ntBASIC0.33□□□□□ -2.36
RFX2P48378 MIR3202-2-201ENST00000635980 79 ntBASIC0.33□□□□□ -2.36
RFX2P48378 MIRLET7A1-201ENST00000362295 80 ntBASIC0.32□□□□□ -2.36
RFX2P48378 RNU6-340P-201ENST00000364005 107 ntBASIC0.32□□□□□ -2.36
RFX2P48378 Y_RNA.676-201ENST00000516393 96 ntBASIC0.32□□□□□ -2.36
RFX2P48378 YWHAEP3-201ENST00000582767 121 ntBASIC0.32□□□□□ -2.36
RFX2P48378 MIR4712-201ENST00000583750 82 ntBASIC0.32□□□□□ -2.36
RFX2P48378 SNORA9.1-201ENST00000362412 131 ntBASIC0.31□□□□□ -2.36
RFX2P48378 SNORA50A-201ENST00000384225 134 ntBASIC0.31□□□□□ -2.36
RFX2P48378 MIR652-201ENST00000385278 98 ntBASIC0.31□□□□□ -2.36
RFX2P48378 SNORD78.1-201ENST00000390866 65 ntBASIC0.31□□□□□ -2.36
RFX2P48378 MIR1255A-201ENST00000408338 113 ntBASIC0.31□□□□□ -2.36
RFX2P48378 MIR4677-201ENST00000584153 80 ntBASIC0.31□□□□□ -2.36
RFX2P48378 MIR6734-201ENST00000621166 68 ntBASIC0.31□□□□□ -2.36
RFX2P48378 uc_338.10-201ENST00000621872 182 ntBASIC0.31□□□□□ -2.36
RFX2P48378 RNU6-315P-201ENST00000362666 107 ntBASIC0.3□□□□□ -2.36
RFX2P48378 Y_RNA.94-201ENST00000363068 106 ntBASIC0.3□□□□□ -2.36
RFX2P48378 RNU6-154P-201ENST00000384306 106 ntBASIC0.3□□□□□ -2.36
RFX2P48378 MIR516B1-201ENST00000385211 90 ntBASIC0.3□□□□□ -2.36
RFX2P48378 Y_RNA.606-201ENST00000410579 103 ntBASIC0.3□□□□□ -2.36
RFX2P48378 RNA5SP247-201ENST00000411181 105 ntBASIC0.3□□□□□ -2.36
RFX2P48378 RNU7-24P-201ENST00000458867 62 ntBASIC0.3□□□□□ -2.36
RFX2P48378 RNU6-274P-201ENST00000459566 107 ntBASIC0.3□□□□□ -2.36
RFX2P48378 RNU6-42P-201ENST00000384165 107 ntBASIC0.29□□□□□ -2.36
RFX2P48378 Y_RNA.532-201ENST00000384590 113 ntBASIC0.29□□□□□ -2.36
RFX2P48378 AC108740.1-201ENST00000498629 225 ntBASIC0.29□□□□□ -2.36
RFX2P48378 MIR4484-201ENST00000582855 83 ntBASIC0.29□□□□□ -2.36
RFX2P48378 MIR548AD-201ENST00000584780 82 ntBASIC0.29□□□□□ -2.36
RFX2P48378 AC090625.1-201ENST00000357130 210 ntBASIC0.28□□□□□ -2.36
RFX2P48378 RNU6-681P-201ENST00000364012 104 ntBASIC0.28□□□□□ -2.36
RFX2P48378 RNU6-127P-201ENST00000390897 107 ntBASIC0.28□□□□□ -2.36
RFX2P48378 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.28□□□□□ -2.36
RFX2P48378 RNA5SP225-201ENST00000410874 135 ntBASIC0.28□□□□□ -2.36
RFX2P48378 AL691482.2-201ENST00000457453 84 ntBASIC0.28□□□□□ -2.36
RFX2P48378 AC069113.3-201ENST00000521019 150 ntBASIC0.28□□□□□ -2.36
RFX2P48378 MIR6513-201ENST00000621188 64 ntBASIC0.28□□□□□ -2.36
RFX2P48378 AC243829.3-201ENST00000622177 108 ntBASIC0.28□□□□□ -2.36
RFX2P48378 RNU6-1327P-201ENST00000365302 105 ntBASIC0.27□□□□□ -2.37
RFX2P48378 MIR203A-201ENST00000384836 110 ntBASIC0.27□□□□□ -2.37
RFX2P48378 MIR643-201ENST00000385267 97 ntBASIC0.27□□□□□ -2.37
RFX2P48378 SCARNA17.3-201ENST00000516381 125 ntBASIC0.27□□□□□ -2.37
RFX2P48378 RNU6-303P-201ENST00000517091 106 ntBASIC0.27□□□□□ -2.37
RFX2P48378 AC243829.6-201ENST00000612652 106 ntBASIC0.27□□□□□ -2.37
RFX2P48378 AC084368.1-201ENST00000620935 65 ntBASIC0.27□□□□□ -2.37
RFX2P48378 RNU6-1094P-201ENST00000362416 104 ntBASIC0.26□□□□□ -2.37
RFX2P48378 SNORD114-4-201ENST00000363962 75 ntBASIC0.26□□□□□ -2.37
RFX2P48378 RNU6-990P-201ENST00000364385 104 ntBASIC0.26□□□□□ -2.37
RFX2P48378 RNU6-1039P-201ENST00000383931 107 ntBASIC0.26□□□□□ -2.37
RFX2P48378 RNU6-380P-201ENST00000410207 107 ntBASIC0.26□□□□□ -2.37
RFX2P48378 RNA5SP134-201ENST00000516492 96 ntBASIC0.26□□□□□ -2.37
RFX2P48378 RNU7-188P-201ENST00000517063 64 ntBASIC0.26□□□□□ -2.37
RFX2P48378 MIR3925-201ENST00000584674 77 ntBASIC0.26□□□□□ -2.37
RFX2P48378 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.26□□□□□ -2.37
RFX2P48378 MIR6509-201ENST00000614603 85 ntBASIC0.26□□□□□ -2.37
RFX2P48378 RNU6-330P-201ENST00000363015 107 ntBASIC0.25□□□□□ -2.37
RFX2P48378 MIR1287-201ENST00000408492 90 ntBASIC0.25□□□□□ -2.37
RFX2P48378 AC074348.1-201ENST00000426503 132 ntBASIC0.24□□□□□ -2.37
RFX2P48378 SCARNA11.2-201ENST00000517183 154 ntBASIC0.24□□□□□ -2.37
RFX2P48378 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
RFX2P48378 Y_RNA.226-201ENST00000364337 114 ntBASIC0.23□□□□□ -2.37
RFX2P48378 MIR582-201ENST00000365731 98 ntBASIC0.23□□□□□ -2.37
RFX2P48378 SCARNA18B-201ENST00000458806 135 ntBASIC0.23□□□□□ -2.37
RFX2P48378 RNU6-857P-201ENST00000515893 110 ntBASIC0.23□□□□□ -2.37
RFX2P48378 RNU6-807P-201ENST00000516805 107 ntBASIC0.23□□□□□ -2.37
RFX2P48378 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
RFX2P48378 Y_RNA.36-201ENST00000362602 112 ntBASIC0.22□□□□□ -2.37
RFX2P48378 SNORD114-29-201ENST00000364819 70 ntBASIC0.22□□□□□ -2.37
RFX2P48378 VTRNA1-3-201ENST00000365645 89 ntBASIC0.22□□□□□ -2.37
RFX2P48378 RNU6-260P-201ENST00000384092 107 ntBASIC0.22□□□□□ -2.37
RFX2P48378 SNORA8.1-201ENST00000384250 140 ntBASIC0.22□□□□□ -2.37
RFX2P48378 RNA5SP147-201ENST00000516493 109 ntBASIC0.22□□□□□ -2.37
RFX2P48378 MIR1297-201ENST00000637311 77 ntBASIC0.22□□□□□ -2.37
RFX2P48378 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.21□□□□□ -2.38
RFX2P48378 RNU6-279P-201ENST00000391297 101 ntBASIC0.21□□□□□ -2.38
RFX2P48378 MIR936-201ENST00000401264 98 ntBASIC0.21□□□□□ -2.38
RFX2P48378 MIR548E-201ENST00000408287 88 ntBASIC0.21□□□□□ -2.38
RFX2P48378 MIR548H2-201ENST00000408874 88 ntBASIC0.21□□□□□ -2.38
RFX2P48378 RNU6-752P-201ENST00000516376 102 ntBASIC0.21□□□□□ -2.38
RFX2P48378 RNU6-782P-201ENST00000516852 104 ntBASIC0.21□□□□□ -2.38
RFX2P48378 MIR4711-201ENST00000578274 70 ntBASIC0.21□□□□□ -2.38
RFX2P48378 MIR3657-201ENST00000584818 117 ntBASIC0.21□□□□□ -2.38
RFX2P48378 MIR4315-1-201ENST00000636800 73 ntBASIC0.21□□□□□ -2.38
RFX2P48378 MIR4315-2-201ENST00000640925 73 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 188.5 ms