Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.4□□□□□ -2.19
MSX1P28360 RNU6-829P-201ENST00000363700 112 ntBASIC1.39□□□□□ -2.19
MSX1P28360 RNU6-302P-201ENST00000365249 107 ntBASIC1.39□□□□□ -2.19
MSX1P28360 SNORD26-201ENST00000384147 75 ntBASIC1.39□□□□□ -2.19
MSX1P28360 MIR521-2-201ENST00000384818 87 ntBASIC1.39□□□□□ -2.19
MSX1P28360 MIR1276-201ENST00000408707 83 ntBASIC1.39□□□□□ -2.19
MSX1P28360 MIR6504-201ENST00000613520 61 ntBASIC1.39□□□□□ -2.19
MSX1P28360 SNORD114-24-201ENST00000365029 72 ntBASIC1.38□□□□□ -2.19
MSX1P28360 RNA5SP227-201ENST00000516184 113 ntBASIC1.38□□□□□ -2.19
MSX1P28360 SNORA31.24-201ENST00000517232 57 ntBASIC1.38□□□□□ -2.19
MSX1P28360 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.38□□□□□ -2.19
MSX1P28360 RNU6-1079P-201ENST00000362861 110 ntBASIC1.37□□□□□ -2.19
MSX1P28360 MIR1304-201ENST00000408243 91 ntBASIC1.37□□□□□ -2.19
MSX1P28360 RNU6-955P-201ENST00000410497 104 ntBASIC1.37□□□□□ -2.19
MSX1P28360 AL157398.1-201ENST00000452981 186 ntBASIC1.37□□□□□ -2.19
MSX1P28360 RPS29P23-201ENST00000458635 123 ntBASIC1.37□□□□□ -2.19
MSX1P28360 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
MSX1P28360 snoU13.13-201ENST00000458842 104 ntBASIC1.36□□□□□ -2.19
MSX1P28360 RNA5SP255-201ENST00000516370 107 ntBASIC1.36□□□□□ -2.19
MSX1P28360 MIR4421-201ENST00000578133 69 ntBASIC1.36□□□□□ -2.19
MSX1P28360 MIR4452-201ENST00000583004 71 ntBASIC1.36□□□□□ -2.19
MSX1P28360 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.36□□□□□ -2.19
MSX1P28360 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.36□□□□□ -2.19
MSX1P28360 MIR18A-201ENST00000362310 71 ntBASIC1.35□□□□□ -2.19
MSX1P28360 RNA5SP220-201ENST00000516298 104 ntBASIC1.35□□□□□ -2.19
MSX1P28360 MIR548V-201ENST00000584165 80 ntBASIC1.35□□□□□ -2.19
MSX1P28360 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.35□□□□□ -2.19
MSX1P28360 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.35□□□□□ -2.19
MSX1P28360 RNU1-124P-201ENST00000363861 145 ntBASIC1.34□□□□□ -2.19
MSX1P28360 Y_RNA.236-201ENST00000364427 111 ntBASIC1.34□□□□□ -2.19
MSX1P28360 RNU4-45P-201ENST00000365469 141 ntBASIC1.34□□□□□ -2.19
MSX1P28360 Y_RNA.407-201ENST00000383986 113 ntBASIC1.34□□□□□ -2.19
MSX1P28360 SNORA15B-2-201ENST00000384058 135 ntBASIC1.34□□□□□ -2.19
MSX1P28360 SNORA15B-1-201ENST00000384334 135 ntBASIC1.34□□□□□ -2.19
MSX1P28360 AC021146.9-201ENST00000512503 156 ntBASIC1.34□□□□□ -2.19
MSX1P28360 RNA5SP404-201ENST00000517118 132 ntBASIC1.34□□□□□ -2.19
MSX1P28360 AC011195.1-201ENST00000578177 177 ntBASIC1.34□□□□□ -2.19
MSX1P28360 RNU6-92P-201ENST00000605893 104 ntBASIC1.34□□□□□ -2.19
MSX1P28360 SNORA36.1-201ENST00000363424 132 ntBASIC1.33□□□□□ -2.2
MSX1P28360 MIR548C-201ENST00000384815 97 ntBASIC1.33□□□□□ -2.2
MSX1P28360 MIR758-201ENST00000390227 88 ntBASIC1.33□□□□□ -2.2
MSX1P28360 MIR1323-201ENST00000408090 73 ntBASIC1.33□□□□□ -2.2
MSX1P28360 SNORD99-201ENST00000408612 74 ntBASIC1.33□□□□□ -2.2
MSX1P28360 Y_RNA.633-201ENST00000459107 95 ntBASIC1.33□□□□□ -2.2
MSX1P28360 SCARNA17.3-201ENST00000516381 125 ntBASIC1.33□□□□□ -2.2
MSX1P28360 RNU6-122P-201ENST00000516818 107 ntBASIC1.33□□□□□ -2.2
MSX1P28360 RNA5SP268-201ENST00000516828 124 ntBASIC1.33□□□□□ -2.2
MSX1P28360 RNA5SP480-201ENST00000516840 109 ntBASIC1.33□□□□□ -2.2
MSX1P28360 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.33□□□□□ -2.2
MSX1P28360 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.33□□□□□ -2.2
MSX1P28360 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.33□□□□□ -2.2
MSX1P28360 MIR150-201ENST00000385048 84 ntBASIC1.32□□□□□ -2.2
MSX1P28360 MIR652-201ENST00000385278 98 ntBASIC1.32□□□□□ -2.2
MSX1P28360 MIR618-201ENST00000385287 98 ntBASIC1.32□□□□□ -2.2
MSX1P28360 MIR320A-201ENST00000385302 82 ntBASIC1.32□□□□□ -2.2
MSX1P28360 AL354695.1-201ENST00000427935 228 ntBASIC1.32□□□□□ -2.2
MSX1P28360 RNA5SP102-201ENST00000516865 106 ntBASIC1.32□□□□□ -2.2
MSX1P28360 SNORA25.8-201ENST00000364831 128 ntBASIC1.31□□□□□ -2.2
MSX1P28360 AC006210.1-201ENST00000424882 111 ntBASIC1.31□□□□□ -2.2
MSX1P28360 SNORD110-201ENST00000408189 75 ntBASIC1.3□□□□□ -2.2
MSX1P28360 MIR7974-201ENST00000615835 79 ntBASIC1.3□□□□□ -2.2
MSX1P28360 AL353770.2-201ENST00000620024 78 ntBASIC1.3□□□□□ -2.2
MSX1P28360 uc_338.10-201ENST00000621872 182 ntBASIC1.3□□□□□ -2.2
MSX1P28360 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
MSX1P28360 SNORA63.6-201ENST00000364921 119 ntBASIC1.29□□□□□ -2.2
MSX1P28360 SNORD114-22-201ENST00000365423 72 ntBASIC1.29□□□□□ -2.2
MSX1P28360 MIR630-201ENST00000384957 97 ntBASIC1.29□□□□□ -2.2
MSX1P28360 RNA5SP94-201ENST00000516917 108 ntBASIC1.29□□□□□ -2.2
MSX1P28360 MIR3938-201ENST00000582157 103 ntBASIC1.29□□□□□ -2.2
MSX1P28360 U2.7-201ENST00000619197 100 ntBASIC1.29□□□□□ -2.2
MSX1P28360 RNA5SP325-201ENST00000363756 130 ntBASIC1.28□□□□□ -2.2
MSX1P28360 SNORA33.1-201ENST00000364957 130 ntBASIC1.28□□□□□ -2.2
MSX1P28360 MIR517B-201ENST00000385102 67 ntBASIC1.28□□□□□ -2.2
MSX1P28360 SNORA75.1-201ENST00000391130 148 ntBASIC1.28□□□□□ -2.2
MSX1P28360 MIR548AE1-201ENST00000583292 70 ntBASIC1.28□□□□□ -2.2
MSX1P28360 MIR6078-201ENST00000611069 100 ntBASIC1.28□□□□□ -2.2
MSX1P28360 MIR7107-201ENST00000611489 80 ntBASIC1.28□□□□□ -2.2
MSX1P28360 MIR26B-201ENST00000362251 77 ntBASIC1.27□□□□□ -2.21
MSX1P28360 SNORD60.1-201ENST00000362451 73 ntBASIC1.27□□□□□ -2.21
MSX1P28360 Y_RNA.125-201ENST00000363371 111 ntBASIC1.27□□□□□ -2.21
MSX1P28360 RNU7-174P-201ENST00000516248 59 ntBASIC1.27□□□□□ -2.21
MSX1P28360 MIR4473-201ENST00000583731 91 ntBASIC1.27□□□□□ -2.21
MSX1P28360 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.26□□□□□ -2.21
MSX1P28360 RNU6-446P-201ENST00000362827 106 ntBASIC1.26□□□□□ -2.21
MSX1P28360 RNU6-698P-201ENST00000363523 107 ntBASIC1.26□□□□□ -2.21
MSX1P28360 RNU6-34P-201ENST00000364874 107 ntBASIC1.26□□□□□ -2.21
MSX1P28360 MIR582-201ENST00000365731 98 ntBASIC1.26□□□□□ -2.21
MSX1P28360 SNORD113-2-201ENST00000391082 72 ntBASIC1.26□□□□□ -2.21
MSX1P28360 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.26□□□□□ -2.21
MSX1P28360 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.25□□□□□ -2.21
MSX1P28360 MIR548E-201ENST00000408287 88 ntBASIC1.24□□□□□ -2.21
MSX1P28360 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.24□□□□□ -2.21
MSX1P28360 SNORA70.25-201ENST00000612741 95 ntBASIC1.23□□□□□ -2.21
MSX1P28360 RNU6-939P-201ENST00000384634 107 ntBASIC1.22□□□□□ -2.21
MSX1P28360 RNA5SP222-201ENST00000411039 105 ntBASIC1.22□□□□□ -2.21
MSX1P28360 MIR6779-201ENST00000617283 64 ntBASIC1.22□□□□□ -2.21
MSX1P28360 MIR6515-201ENST00000619843 57 ntBASIC1.22□□□□□ -2.21
MSX1P28360 U4.4-201ENST00000620626 117 ntBASIC1.21□□□□□ -2.22
MSX1P28360 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.21□□□□□ -2.22
MSX1P28360 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 201.6 ms