Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 Y_RNA.616-201ENST00000410835 95 ntBASIC-2.1□□□□□ -2.75
LIMS3P0CW19 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-2.1□□□□□ -2.75
LIMS3P0CW19 RNU6-260P-201ENST00000384092 107 ntBASIC-2.11□□□□□ -2.75
LIMS3P0CW19 Y_RNA.491-201ENST00000384417 107 ntBASIC-2.11□□□□□ -2.75
LIMS3P0CW19 U4.2-201ENST00000618561 85 ntBASIC-2.11□□□□□ -2.75
LIMS3P0CW19 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-2.11□□□□□ -2.75
LIMS3P0CW19 RNY3P14-201ENST00000384309 102 ntBASIC-2.12□□□□□ -2.75
LIMS3P0CW19 Y_RNA.478-201ENST00000384358 107 ntBASIC-2.12□□□□□ -2.75
LIMS3P0CW19 snoU13.17-201ENST00000458802 104 ntBASIC-2.12□□□□□ -2.75
LIMS3P0CW19 Y_RNA.644-201ENST00000459006 113 ntBASIC-2.12□□□□□ -2.75
LIMS3P0CW19 AC091912.2-201ENST00000624798 167 ntBASIC-2.12□□□□□ -2.75
LIMS3P0CW19 Y_RNA.442-201ENST00000384131 102 ntBASIC-2.13□□□□□ -2.75
LIMS3P0CW19 MIR577-201ENST00000385196 96 ntBASIC-2.13□□□□□ -2.75
LIMS3P0CW19 RNU6-62P-201ENST00000516526 102 ntBASIC-2.13□□□□□ -2.75
LIMS3P0CW19 MIR4694-201ENST00000578534 80 ntBASIC-2.13□□□□□ -2.75
LIMS3P0CW19 RNU6-1233P-201ENST00000362922 102 ntBASIC-2.14□□□□□ -2.75
LIMS3P0CW19 SNORA33.1-201ENST00000364957 130 ntBASIC-2.14□□□□□ -2.75
LIMS3P0CW19 RNU4-11P-201ENST00000365287 132 ntBASIC-2.14□□□□□ -2.75
LIMS3P0CW19 RNU6-460P-201ENST00000391158 108 ntBASIC-2.14□□□□□ -2.75
LIMS3P0CW19 RNU7-197P-201ENST00000458836 62 ntBASIC-2.14□□□□□ -2.75
LIMS3P0CW19 CYP3A54P-201ENST00000566950 75 ntBASIC-2.15□□□□□ -2.75
LIMS3P0CW19 MIR4439-201ENST00000583746 80 ntBASIC-2.15□□□□□ -2.75
LIMS3P0CW19 RNU6-382P-201ENST00000365181 106 ntBASIC-2.16□□□□□ -2.76
LIMS3P0CW19 RNA5SP147-201ENST00000516493 109 ntBASIC-2.16□□□□□ -2.76
LIMS3P0CW19 Y_RNA.698-201ENST00000516798 118 ntBASIC-2.16□□□□□ -2.76
LIMS3P0CW19 RNA5SP26-201ENST00000362406 119 ntBASIC-2.17□□□□□ -2.76
LIMS3P0CW19 SNORA2.1-201ENST00000363089 137 ntBASIC-2.17□□□□□ -2.76
LIMS3P0CW19 Y_RNA.200-201ENST00000364018 102 ntBASIC-2.17□□□□□ -2.76
LIMS3P0CW19 RNU6-644P-201ENST00000391155 98 ntBASIC-2.17□□□□□ -2.76
LIMS3P0CW19 MTATP6P29-201ENST00000415057 132 ntBASIC-2.17□□□□□ -2.76
LIMS3P0CW19 Y_RNA.720-201ENST00000517166 92 ntBASIC-2.17□□□□□ -2.76
LIMS3P0CW19 Y_RNA.55-201ENST00000362797 102 ntBASIC-2.18□□□□□ -2.76
LIMS3P0CW19 RNU6-1039P-201ENST00000383931 107 ntBASIC-2.18□□□□□ -2.76
LIMS3P0CW19 MIR548F4-201ENST00000408515 105 ntBASIC-2.18□□□□□ -2.76
LIMS3P0CW19 Y_RNA.613-201ENST00000410726 97 ntBASIC-2.18□□□□□ -2.76
LIMS3P0CW19 AL353691.2-201ENST00000443795 59 ntBASIC-2.18□□□□□ -2.76
LIMS3P0CW19 SNORD4B-201ENST00000459083 72 ntBASIC-2.18□□□□□ -2.76
LIMS3P0CW19 RNU7-154P-201ENST00000516194 62 ntBASIC-2.18□□□□□ -2.76
LIMS3P0CW19 RNU6-412P-201ENST00000516434 106 ntBASIC-2.18□□□□□ -2.76
LIMS3P0CW19 MIR548Z-201ENST00000584743 97 ntBASIC-2.18□□□□□ -2.76
LIMS3P0CW19 MIR6874-201ENST00000635894 71 ntBASIC-2.18□□□□□ -2.76
LIMS3P0CW19 RNU6-832P-201ENST00000363319 107 ntBASIC-2.19□□□□□ -2.76
LIMS3P0CW19 SNORD114-3-201ENST00000364969 75 ntBASIC-2.19□□□□□ -2.76
LIMS3P0CW19 Y_RNA.535-201ENST00000384612 99 ntBASIC-2.19□□□□□ -2.76
LIMS3P0CW19 RNA5SP86-201ENST00000390869 98 ntBASIC-2.19□□□□□ -2.76
LIMS3P0CW19 RNU6-1135P-201ENST00000411083 103 ntBASIC-2.19□□□□□ -2.76
LIMS3P0CW19 MIR6509-201ENST00000614603 85 ntBASIC-2.19□□□□□ -2.76
LIMS3P0CW19 RNU6-1014P-201ENST00000383940 103 ntBASIC-2.2□□□□□ -2.76
LIMS3P0CW19 AC022559.1-201ENST00000520905 205 ntBASIC-2.2□□□□□ -2.76
LIMS3P0CW19 RNY3P2-201ENST00000362918 102 ntBASIC-2.21□□□□□ -2.76
LIMS3P0CW19 Y_RNA.309-201ENST00000365046 111 ntBASIC-2.21□□□□□ -2.76
LIMS3P0CW19 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.21□□□□□ -2.76
LIMS3P0CW19 AL158147.1-201ENST00000443970 75 ntBASIC-2.21□□□□□ -2.76
LIMS3P0CW19 RNU6-1333P-201ENST00000516162 93 ntBASIC-2.21□□□□□ -2.76
LIMS3P0CW19 RNU6-781P-201ENST00000516377 101 ntBASIC-2.21□□□□□ -2.76
LIMS3P0CW19 AC072026.1-201ENST00000605023 201 ntBASIC-2.21□□□□□ -2.76
LIMS3P0CW19 AP001340.1-201ENST00000624405 217 ntBASIC-2.21□□□□□ -2.76
LIMS3P0CW19 MIR4773-1-201ENST00000637203 78 ntBASIC-2.21□□□□□ -2.76
LIMS3P0CW19 Y_RNA.180-201ENST00000363867 113 ntBASIC-2.22□□□□□ -2.76
LIMS3P0CW19 RNU6-164P-201ENST00000364604 103 ntBASIC-2.22□□□□□ -2.76
LIMS3P0CW19 RNU6-540P-201ENST00000384622 101 ntBASIC-2.22□□□□□ -2.76
LIMS3P0CW19 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-2.22□□□□□ -2.76
LIMS3P0CW19 RNU6-1153P-201ENST00000516760 105 ntBASIC-2.22□□□□□ -2.76
LIMS3P0CW19 MIR3657-201ENST00000584818 117 ntBASIC-2.22□□□□□ -2.76
LIMS3P0CW19 Y_RNA.350-201ENST00000365409 98 ntBASIC-2.23□□□□□ -2.77
LIMS3P0CW19 Y_RNA.422-201ENST00000384054 114 ntBASIC-2.23□□□□□ -2.77
LIMS3P0CW19 MIR203A-201ENST00000384836 110 ntBASIC-2.23□□□□□ -2.77
LIMS3P0CW19 RNU6-519P-201ENST00000410590 108 ntBASIC-2.23□□□□□ -2.77
LIMS3P0CW19 MTCYBP6-201ENST00000441810 138 ntBASIC-2.23□□□□□ -2.77
LIMS3P0CW19 RNU6-983P-201ENST00000516004 103 ntBASIC-2.23□□□□□ -2.77
LIMS3P0CW19 RNU5F-1-201ENST00000362507 117 ntBASIC-2.24□□□□□ -2.77
LIMS3P0CW19 Y_RNA.162-201ENST00000363683 102 ntBASIC-2.24□□□□□ -2.77
LIMS3P0CW19 SNORD115-22-201ENST00000364456 82 ntBASIC-2.24□□□□□ -2.77
LIMS3P0CW19 SNORD45B-201ENST00000364617 72 ntBASIC-2.24□□□□□ -2.77
LIMS3P0CW19 RNA5SP292-201ENST00000390974 118 ntBASIC-2.24□□□□□ -2.77
LIMS3P0CW19 MIR513C-201ENST00000401352 84 ntBASIC-2.24□□□□□ -2.77
LIMS3P0CW19 Y_RNA.674-201ENST00000516362 113 ntBASIC-2.24□□□□□ -2.77
LIMS3P0CW19 MIR4801-201ENST00000582704 82 ntBASIC-2.24□□□□□ -2.77
LIMS3P0CW19 AC025166.1-201ENST00000612411 163 ntBASIC-2.24□□□□□ -2.77
LIMS3P0CW19 Y_RNA.47-201ENST00000362697 108 ntBASIC-2.25□□□□□ -2.77
LIMS3P0CW19 RNU6-813P-201ENST00000384691 107 ntBASIC-2.25□□□□□ -2.77
LIMS3P0CW19 MIR548I1-201ENST00000408810 149 ntBASIC-2.25□□□□□ -2.77
LIMS3P0CW19 SNORA18.5-201ENST00000516616 101 ntBASIC-2.25□□□□□ -2.77
LIMS3P0CW19 RNU6-111P-201ENST00000517179 105 ntBASIC-2.25□□□□□ -2.77
LIMS3P0CW19 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-2.25□□□□□ -2.77
LIMS3P0CW19 AC103810.7-201ENST00000607821 91 ntBASIC-2.25□□□□□ -2.77
LIMS3P0CW19 MIR521-2-201ENST00000384818 87 ntBASIC-2.26□□□□□ -2.77
LIMS3P0CW19 MIR507-201ENST00000385234 94 ntBASIC-2.26□□□□□ -2.77
LIMS3P0CW19 MIR548H1-201ENST00000408610 102 ntBASIC-2.26□□□□□ -2.77
LIMS3P0CW19 AL691482.2-201ENST00000457453 84 ntBASIC-2.26□□□□□ -2.77
LIMS3P0CW19 MIR3128-201ENST00000581957 66 ntBASIC-2.26□□□□□ -2.77
LIMS3P0CW19 AC044792.1-201ENST00000593294 196 ntBASIC-2.26□□□□□ -2.77
LIMS3P0CW19 RNY4P27-201ENST00000363341 96 ntBASIC-2.27□□□□□ -2.77
LIMS3P0CW19 Y_RNA.149-201ENST00000363558 117 ntBASIC-2.27□□□□□ -2.77
LIMS3P0CW19 RNU6-824P-201ENST00000363724 104 ntBASIC-2.27□□□□□ -2.77
LIMS3P0CW19 RNU6-151P-201ENST00000364158 107 ntBASIC-2.27□□□□□ -2.77
LIMS3P0CW19 Y_RNA.240-201ENST00000364469 95 ntBASIC-2.27□□□□□ -2.77
LIMS3P0CW19 Y_RNA.348-201ENST00000365403 103 ntBASIC-2.27□□□□□ -2.77
LIMS3P0CW19 Y_RNA.375-201ENST00000365625 101 ntBASIC-2.27□□□□□ -2.77
LIMS3P0CW19 Y_RNA.558-201ENST00000384685 113 ntBASIC-2.27□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms