Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MIR548AE1-201ENST00000583292 70 ntBASIC0.53□□□□□ -2.32
LDB3O75112 AC092634.7-201ENST00000621022 103 ntBASIC0.53□□□□□ -2.32
LDB3O75112 RNU6-1094P-201ENST00000362416 104 ntBASIC0.52□□□□□ -2.33
LDB3O75112 RNU6-495P-201ENST00000362995 107 ntBASIC0.52□□□□□ -2.33
LDB3O75112 SNORD118-201ENST00000363593 134 ntBASIC0.52□□□□□ -2.33
LDB3O75112 RNU6-945P-201ENST00000383947 107 ntBASIC0.52□□□□□ -2.33
LDB3O75112 RNU6-523P-201ENST00000516304 54 ntBASIC0.52□□□□□ -2.33
LDB3O75112 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.52□□□□□ -2.33
LDB3O75112 RNU6-303P-201ENST00000517091 106 ntBASIC0.52□□□□□ -2.33
LDB3O75112 MIR4460-201ENST00000577862 86 ntBASIC0.52□□□□□ -2.33
LDB3O75112 RNA5SP347-201ENST00000362445 119 ntBASIC0.51□□□□□ -2.33
LDB3O75112 RNA5SP499-201ENST00000363982 119 ntBASIC0.51□□□□□ -2.33
LDB3O75112 Y_RNA.264-201ENST00000364665 102 ntBASIC0.51□□□□□ -2.33
LDB3O75112 RNU2-59P-201ENST00000410482 191 ntBASIC0.51□□□□□ -2.33
LDB3O75112 SNORA40.17-201ENST00000517256 115 ntBASIC0.51□□□□□ -2.33
LDB3O75112 AC145423.2-201ENST00000610631 239 ntBASIC0.51□□□□□ -2.33
LDB3O75112 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
LDB3O75112 MIR6755-201ENST00000619993 66 ntBASIC0.51□□□□□ -2.33
LDB3O75112 SNORD75.2-201ENST00000408784 58 ntBASIC0.5□□□□□ -2.33
LDB3O75112 MIR4473-201ENST00000583731 91 ntBASIC0.5□□□□□ -2.33
LDB3O75112 Y_RNA.36-201ENST00000362602 112 ntBASIC0.49□□□□□ -2.33
LDB3O75112 RNU6-990P-201ENST00000364385 104 ntBASIC0.49□□□□□ -2.33
LDB3O75112 RNU6-776P-201ENST00000364403 104 ntBASIC0.49□□□□□ -2.33
LDB3O75112 RNU6-1022P-201ENST00000365049 104 ntBASIC0.49□□□□□ -2.33
LDB3O75112 MIR203A-201ENST00000384836 110 ntBASIC0.49□□□□□ -2.33
LDB3O75112 MIR518A1-201ENST00000385068 85 ntBASIC0.49□□□□□ -2.33
LDB3O75112 SNORA40.8-201ENST00000411034 126 ntBASIC0.49□□□□□ -2.33
LDB3O75112 HMGN2P22-201ENST00000427588 175 ntBASIC0.49□□□□□ -2.33
LDB3O75112 RNU7-74P-201ENST00000459104 62 ntBASIC0.49□□□□□ -2.33
LDB3O75112 Y_RNA.423-201ENST00000384057 113 ntBASIC0.48□□□□□ -2.33
LDB3O75112 MIR598-201ENST00000384868 97 ntBASIC0.48□□□□□ -2.33
LDB3O75112 SNORD110-201ENST00000408189 75 ntBASIC0.48□□□□□ -2.33
LDB3O75112 AC006210.1-201ENST00000424882 111 ntBASIC0.48□□□□□ -2.33
LDB3O75112 AC098934.3-201ENST00000430450 190 ntBASIC0.48□□□□□ -2.33
LDB3O75112 AL157398.1-201ENST00000452981 186 ntBASIC0.48□□□□□ -2.33
LDB3O75112 RNA5SP436-201ENST00000516020 115 ntBASIC0.48□□□□□ -2.33
LDB3O75112 RNU6-229P-201ENST00000516614 102 ntBASIC0.48□□□□□ -2.33
LDB3O75112 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.48□□□□□ -2.33
LDB3O75112 MIR6513-201ENST00000621188 64 ntBASIC0.48□□□□□ -2.33
LDB3O75112 SNORA8.1-201ENST00000384250 140 ntBASIC0.47□□□□□ -2.33
LDB3O75112 SNORD71-201ENST00000411292 86 ntBASIC0.47□□□□□ -2.33
LDB3O75112 SNORA68.3-201ENST00000515906 83 ntBASIC0.47□□□□□ -2.33
LDB3O75112 U7.4-201ENST00000614961 63 ntBASIC0.47□□□□□ -2.33
LDB3O75112 AC069503.3-201ENST00000618674 145 ntBASIC0.47□□□□□ -2.33
LDB3O75112 uc_338.17-201ENST00000619633 179 ntBASIC0.47□□□□□ -2.33
LDB3O75112 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.47□□□□□ -2.33
LDB3O75112 RNU6-1039P-201ENST00000383931 107 ntBASIC0.46□□□□□ -2.34
LDB3O75112 Y_RNA.565-201ENST00000384719 101 ntBASIC0.46□□□□□ -2.34
LDB3O75112 MIR489-201ENST00000384923 84 ntBASIC0.46□□□□□ -2.34
LDB3O75112 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.46□□□□□ -2.34
LDB3O75112 RNU7-24P-201ENST00000458867 62 ntBASIC0.46□□□□□ -2.34
LDB3O75112 MIR5087-201ENST00000635826 76 ntBASIC0.46□□□□□ -2.34
LDB3O75112 MIR103A1-201ENST00000362165 78 ntBASIC0.45□□□□□ -2.34
LDB3O75112 MIR652-201ENST00000385278 98 ntBASIC0.45□□□□□ -2.34
LDB3O75112 RNU6-70P-201ENST00000516438 60 ntBASIC0.45□□□□□ -2.34
LDB3O75112 RNU6-1015P-201ENST00000517121 99 ntBASIC0.45□□□□□ -2.34
LDB3O75112 AC073869.9-201ENST00000641610 120 ntBASIC0.45□□□□□ -2.34
LDB3O75112 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.44□□□□□ -2.34
LDB3O75112 SNORD44.1-201ENST00000363202 61 ntBASIC0.44□□□□□ -2.34
LDB3O75112 MIR582-201ENST00000365731 98 ntBASIC0.44□□□□□ -2.34
LDB3O75112 MIR216B-201ENST00000390186 82 ntBASIC0.44□□□□□ -2.34
LDB3O75112 AL691482.2-201ENST00000457453 84 ntBASIC0.44□□□□□ -2.34
LDB3O75112 RNU6-274P-201ENST00000459566 107 ntBASIC0.44□□□□□ -2.34
LDB3O75112 RNU6-687P-201ENST00000516443 89 ntBASIC0.44□□□□□ -2.34
LDB3O75112 RNU6-807P-201ENST00000516805 107 ntBASIC0.44□□□□□ -2.34
LDB3O75112 MIR6509-201ENST00000614603 85 ntBASIC0.44□□□□□ -2.34
LDB3O75112 MIR1297-201ENST00000637311 77 ntBASIC0.44□□□□□ -2.34
LDB3O75112 MIR501-201ENST00000390204 84 ntBASIC0.43□□□□□ -2.34
LDB3O75112 AC114737.2-201ENST00000421583 173 ntBASIC0.43□□□□□ -2.34
LDB3O75112 snoU13.13-201ENST00000458842 104 ntBASIC0.43□□□□□ -2.34
LDB3O75112 RNA5SP147-201ENST00000516493 109 ntBASIC0.43□□□□□ -2.34
LDB3O75112 MIR3675-201ENST00000583661 73 ntBASIC0.43□□□□□ -2.34
LDB3O75112 MIR4662A-201ENST00000637499 67 ntBASIC0.43□□□□□ -2.34
LDB3O75112 RNU6-681P-201ENST00000364012 104 ntBASIC0.42□□□□□ -2.34
LDB3O75112 SNORD115-31-201ENST00000365318 82 ntBASIC0.42□□□□□ -2.34
LDB3O75112 RNU6-1241P-201ENST00000384536 107 ntBASIC0.42□□□□□ -2.34
LDB3O75112 MIR936-201ENST00000401264 98 ntBASIC0.42□□□□□ -2.34
LDB3O75112 MIR3657-201ENST00000584818 117 ntBASIC0.42□□□□□ -2.34
LDB3O75112 AC243829.3-201ENST00000622177 108 ntBASIC0.42□□□□□ -2.34
LDB3O75112 Y_RNA.125-201ENST00000363371 111 ntBASIC0.41□□□□□ -2.34
LDB3O75112 SNORD115-22-201ENST00000364456 82 ntBASIC0.41□□□□□ -2.34
LDB3O75112 RNU6-1296P-201ENST00000383879 107 ntBASIC0.41□□□□□ -2.34
LDB3O75112 Y_RNA.407-201ENST00000383986 113 ntBASIC0.41□□□□□ -2.34
LDB3O75112 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
LDB3O75112 RNU6-604P-201ENST00000390917 100 ntBASIC0.41□□□□□ -2.34
LDB3O75112 RNU6-380P-201ENST00000410207 107 ntBASIC0.41□□□□□ -2.34
LDB3O75112 RNU6-863P-201ENST00000515989 104 ntBASIC0.41□□□□□ -2.34
LDB3O75112 MIR7111-201ENST00000619751 72 ntBASIC0.41□□□□□ -2.34
LDB3O75112 MIR499B-201ENST00000636498 73 ntBASIC0.41□□□□□ -2.34
LDB3O75112 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.4□□□□□ -2.35
LDB3O75112 SNORD45.1-201ENST00000363181 77 ntBASIC0.4□□□□□ -2.35
LDB3O75112 SNORA2A-201ENST00000383885 135 ntBASIC0.4□□□□□ -2.35
LDB3O75112 RNU6-260P-201ENST00000384092 107 ntBASIC0.4□□□□□ -2.35
LDB3O75112 SNORD45A-201ENST00000384512 84 ntBASIC0.4□□□□□ -2.35
LDB3O75112 Y_RNA.545-201ENST00000384652 105 ntBASIC0.4□□□□□ -2.35
LDB3O75112 MIR760-201ENST00000390220 80 ntBASIC0.4□□□□□ -2.35
LDB3O75112 MIRLET7D-201ENST00000362263 87 ntBASIC0.39□□□□□ -2.35
LDB3O75112 RNU6-411P-201ENST00000384451 107 ntBASIC0.39□□□□□ -2.35
LDB3O75112 MIR216A-201ENST00000385063 110 ntBASIC0.39□□□□□ -2.35
LDB3O75112 RNU6-587P-201ENST00000391282 106 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 268.9 ms