Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 RNU6-1152P-201ENST00000384576 107 ntBASIC0.76□□□□□ -2.29
NR2E3Q9Y5X4 SNORD90-201ENST00000391145 111 ntBASIC0.76□□□□□ -2.29
NR2E3Q9Y5X4 RNU6-287P-201ENST00000516230 98 ntBASIC0.76□□□□□ -2.29
NR2E3Q9Y5X4 RN7SKP12-201ENST00000516275 143 ntBASIC0.76□□□□□ -2.29
NR2E3Q9Y5X4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
NR2E3Q9Y5X4 RNU6-1126P-201ENST00000384002 107 ntBASIC0.75□□□□□ -2.29
NR2E3Q9Y5X4 SNORD101-201ENST00000384027 73 ntBASIC0.75□□□□□ -2.29
NR2E3Q9Y5X4 RNU6-592P-201ENST00000411333 103 ntBASIC0.75□□□□□ -2.29
NR2E3Q9Y5X4 SNORA62.5-201ENST00000516634 120 ntBASIC0.75□□□□□ -2.29
NR2E3Q9Y5X4 AC006160.2-201ENST00000637708 154 ntBASIC0.75□□□□□ -2.29
NR2E3Q9Y5X4 MIR519C-201ENST00000385053 87 ntBASIC0.74□□□□□ -2.29
NR2E3Q9Y5X4 MIR1302-4-201ENST00000408701 150 ntBASIC0.74□□□□□ -2.29
NR2E3Q9Y5X4 RNU7-13P-201ENST00000516413 62 ntBASIC0.74□□□□□ -2.29
NR2E3Q9Y5X4 SNORA18.5-201ENST00000516616 101 ntBASIC0.74□□□□□ -2.29
NR2E3Q9Y5X4 MIR5588-201ENST00000581890 63 ntBASIC0.74□□□□□ -2.29
NR2E3Q9Y5X4 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.74□□□□□ -2.29
NR2E3Q9Y5X4 AC067863.3-201ENST00000624172 122 ntBASIC0.74□□□□□ -2.29
NR2E3Q9Y5X4 RNU6-1229P-201ENST00000364295 107 ntBASIC0.73□□□□□ -2.29
NR2E3Q9Y5X4 RNY1P1-201ENST00000364372 112 ntBASIC0.73□□□□□ -2.29
NR2E3Q9Y5X4 RNA5SP517-201ENST00000364724 117 ntBASIC0.73□□□□□ -2.29
NR2E3Q9Y5X4 RNU6-820P-201ENST00000384273 107 ntBASIC0.73□□□□□ -2.29
NR2E3Q9Y5X4 AC022137.1-201ENST00000483735 151 ntBASIC0.73□□□□□ -2.29
NR2E3Q9Y5X4 IGLL4P-201ENST00000614590 133 ntBASIC0.73□□□□□ -2.29
NR2E3Q9Y5X4 AL627230.5-201ENST00000619807 58 ntBASIC0.73□□□□□ -2.29
NR2E3Q9Y5X4 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.72□□□□□ -2.29
NR2E3Q9Y5X4 SNORD115-44-201ENST00000365391 82 ntBASIC0.72□□□□□ -2.29
NR2E3Q9Y5X4 Y_RNA.491-201ENST00000384417 107 ntBASIC0.72□□□□□ -2.29
NR2E3Q9Y5X4 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
NR2E3Q9Y5X4 MIR1236-201ENST00000408340 102 ntBASIC0.72□□□□□ -2.29
NR2E3Q9Y5X4 MIR2113-201ENST00000459007 91 ntBASIC0.72□□□□□ -2.29
NR2E3Q9Y5X4 MIR7107-201ENST00000611489 80 ntBASIC0.72□□□□□ -2.29
NR2E3Q9Y5X4 SNORA8.2-201ENST00000384372 139 ntBASIC0.71□□□□□ -2.3
NR2E3Q9Y5X4 MIR519E-201ENST00000385075 84 ntBASIC0.71□□□□□ -2.3
NR2E3Q9Y5X4 SNORA26.2-201ENST00000390922 122 ntBASIC0.71□□□□□ -2.3
NR2E3Q9Y5X4 Y_RNA.611-201ENST00000410682 108 ntBASIC0.71□□□□□ -2.3
NR2E3Q9Y5X4 RNA5SP268-201ENST00000516828 124 ntBASIC0.71□□□□□ -2.3
NR2E3Q9Y5X4 RNU6-787P-201ENST00000384032 107 ntBASIC0.7□□□□□ -2.3
NR2E3Q9Y5X4 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.7□□□□□ -2.3
NR2E3Q9Y5X4 MIR548U-201ENST00000390728 81 ntBASIC0.7□□□□□ -2.3
NR2E3Q9Y5X4 RNU6-935P-201ENST00000410371 100 ntBASIC0.7□□□□□ -2.3
NR2E3Q9Y5X4 AC093423.1-201ENST00000440817 142 ntBASIC0.7□□□□□ -2.3
NR2E3Q9Y5X4 RNU6-229P-201ENST00000516614 102 ntBASIC0.7□□□□□ -2.3
NR2E3Q9Y5X4 AC018659.1-201ENST00000551083 169 ntBASIC0.7□□□□□ -2.3
NR2E3Q9Y5X4 AC140658.3-201ENST00000567603 271 ntBASIC0.7□□□□□ -2.3
NR2E3Q9Y5X4 MIR4796-201ENST00000580742 81 ntBASIC0.7□□□□□ -2.3
NR2E3Q9Y5X4 AL162376.1-201ENST00000624117 175 ntBASIC0.7□□□□□ -2.3
NR2E3Q9Y5X4 Y_RNA.239-201ENST00000364444 113 ntBASIC0.69□□□□□ -2.3
NR2E3Q9Y5X4 MIR617-201ENST00000385030 97 ntBASIC0.69□□□□□ -2.3
NR2E3Q9Y5X4 RNU7-171P-201ENST00000459581 62 ntBASIC0.69□□□□□ -2.3
NR2E3Q9Y5X4 AC093729.1-201ENST00000513074 128 ntBASIC0.69□□□□□ -2.3
NR2E3Q9Y5X4 SNORA25.13-201ENST00000516395 103 ntBASIC0.69□□□□□ -2.3
NR2E3Q9Y5X4 AC243829.6-201ENST00000612652 106 ntBASIC0.69□□□□□ -2.3
NR2E3Q9Y5X4 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.69□□□□□ -2.3
NR2E3Q9Y5X4 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.69□□□□□ -2.3
NR2E3Q9Y5X4 AC092634.7-201ENST00000621022 103 ntBASIC0.69□□□□□ -2.3
NR2E3Q9Y5X4 RNU6-269P-201ENST00000391077 97 ntBASIC0.68□□□□□ -2.3
NR2E3Q9Y5X4 RNA5SP63-201ENST00000391225 112 ntBASIC0.68□□□□□ -2.3
NR2E3Q9Y5X4 MIR3140-201ENST00000583685 90 ntBASIC0.68□□□□□ -2.3
NR2E3Q9Y5X4 RNU1-29P-201ENST00000606574 126 ntBASIC0.68□□□□□ -2.3
NR2E3Q9Y5X4 RNA5SP173-201ENST00000364857 136 ntBASIC0.67□□□□□ -2.3
NR2E3Q9Y5X4 RNU6-573P-201ENST00000383938 106 ntBASIC0.67□□□□□ -2.3
NR2E3Q9Y5X4 SNORA24B-201ENST00000384176 131 ntBASIC0.67□□□□□ -2.3
NR2E3Q9Y5X4 MIR1265-201ENST00000408444 86 ntBASIC0.67□□□□□ -2.3
NR2E3Q9Y5X4 RNA5SP227-201ENST00000516184 113 ntBASIC0.67□□□□□ -2.3
NR2E3Q9Y5X4 RNU6-624P-201ENST00000363411 107 ntBASIC0.66□□□□□ -2.3
NR2E3Q9Y5X4 SNORD118-201ENST00000363593 134 ntBASIC0.66□□□□□ -2.3
NR2E3Q9Y5X4 RNU6-1051P-201ENST00000365471 102 ntBASIC0.66□□□□□ -2.3
NR2E3Q9Y5X4 VTRNA1-3-201ENST00000365645 89 ntBASIC0.66□□□□□ -2.3
NR2E3Q9Y5X4 RNU6-945P-201ENST00000383947 107 ntBASIC0.66□□□□□ -2.3
NR2E3Q9Y5X4 MIR451A-201ENST00000385059 72 ntBASIC0.66□□□□□ -2.3
NR2E3Q9Y5X4 RNU6-1276P-201ENST00000365372 104 ntBASIC0.65□□□□□ -2.31
NR2E3Q9Y5X4 snoU13.17-201ENST00000458802 104 ntBASIC0.65□□□□□ -2.31
NR2E3Q9Y5X4 MIR4514-201ENST00000581410 57 ntBASIC0.65□□□□□ -2.31
NR2E3Q9Y5X4 SNORA25.18-201ENST00000607153 114 ntBASIC0.65□□□□□ -2.31
NR2E3Q9Y5X4 SNORA40.8-201ENST00000411034 126 ntBASIC0.64□□□□□ -2.31
NR2E3Q9Y5X4 RNU4-54P-201ENST00000516428 129 ntBASIC0.64□□□□□ -2.31
NR2E3Q9Y5X4 SNORA63.2-201ENST00000362603 126 ntBASIC0.63□□□□□ -2.31
NR2E3Q9Y5X4 RNA5SP499-201ENST00000363982 119 ntBASIC0.63□□□□□ -2.31
NR2E3Q9Y5X4 Y_RNA.426-201ENST00000384068 113 ntBASIC0.63□□□□□ -2.31
NR2E3Q9Y5X4 Y_RNA.607-201ENST00000410597 98 ntBASIC0.63□□□□□ -2.31
NR2E3Q9Y5X4 SNORD71-201ENST00000411292 86 ntBASIC0.63□□□□□ -2.31
NR2E3Q9Y5X4 MIR4666B-201ENST00000578142 81 ntBASIC0.63□□□□□ -2.31
NR2E3Q9Y5X4 RNU6-478P-201ENST00000363904 110 ntBASIC0.62□□□□□ -2.31
NR2E3Q9Y5X4 MIR548L-201ENST00000408303 86 ntBASIC0.62□□□□□ -2.31
NR2E3Q9Y5X4 AC069271.1-201ENST00000445577 156 ntBASIC0.62□□□□□ -2.31
NR2E3Q9Y5X4 RNA5SP484-201ENST00000458857 111 ntBASIC0.62□□□□□ -2.31
NR2E3Q9Y5X4 MIR4752-201ENST00000579672 72 ntBASIC0.62□□□□□ -2.31
NR2E3Q9Y5X4 RNU1-141P-201ENST00000364623 158 ntBASIC0.61□□□□□ -2.31
NR2E3Q9Y5X4 MIR518A1-201ENST00000385068 85 ntBASIC0.61□□□□□ -2.31
NR2E3Q9Y5X4 RNU6-1052P-201ENST00000411398 104 ntBASIC0.61□□□□□ -2.31
NR2E3Q9Y5X4 AC114737.2-201ENST00000421583 173 ntBASIC0.61□□□□□ -2.31
NR2E3Q9Y5X4 AL450471.1-201ENST00000447509 127 ntBASIC0.61□□□□□ -2.31
NR2E3Q9Y5X4 FGF7P7-201ENST00000514120 227 ntBASIC0.61□□□□□ -2.31
NR2E3Q9Y5X4 SNORA72.7-201ENST00000516349 94 ntBASIC0.61□□□□□ -2.31
NR2E3Q9Y5X4 RNU6-719P-201ENST00000516671 104 ntBASIC0.61□□□□□ -2.31
NR2E3Q9Y5X4 SNORD115-37-201ENST00000363768 82 ntBASIC0.6□□□□□ -2.31
NR2E3Q9Y5X4 Y_RNA.316-201ENST00000365118 111 ntBASIC0.6□□□□□ -2.31
NR2E3Q9Y5X4 U3.27-201ENST00000391237 200 ntBASIC0.6□□□□□ -2.31
NR2E3Q9Y5X4 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.6□□□□□ -2.31
NR2E3Q9Y5X4 AC023932.2-201ENST00000603176 175 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 221.3 ms