Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AL445193.1-201ENST00000441183 141 ntBASIC-0.52□□□□□ -2.49
VPS54Q9P1Q0 SNORD42B-201ENST00000458893 67 ntBASIC-0.52□□□□□ -2.49
VPS54Q9P1Q0 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.52□□□□□ -2.49
VPS54Q9P1Q0 AC068339.1-201ENST00000526965 141 ntBASIC-0.52□□□□□ -2.49
VPS54Q9P1Q0 RNY3P2-201ENST00000362918 102 ntBASIC-0.53□□□□□ -2.49
VPS54Q9P1Q0 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.53□□□□□ -2.49
VPS54Q9P1Q0 Y_RNA.343-201ENST00000365354 112 ntBASIC-0.53□□□□□ -2.49
VPS54Q9P1Q0 SNORD50.2-201ENST00000365465 70 ntBASIC-0.53□□□□□ -2.49
VPS54Q9P1Q0 RNU6-132P-201ENST00000383863 107 ntBASIC-0.53□□□□□ -2.49
VPS54Q9P1Q0 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.53□□□□□ -2.49
VPS54Q9P1Q0 AC244090.1-201ENST00000441884 93 ntBASIC-0.53□□□□□ -2.49
VPS54Q9P1Q0 FGF7P7-201ENST00000514120 227 ntBASIC-0.53□□□□□ -2.49
VPS54Q9P1Q0 SNORD33.1-201ENST00000516213 88 ntBASIC-0.53□□□□□ -2.49
VPS54Q9P1Q0 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.53□□□□□ -2.49
VPS54Q9P1Q0 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.53□□□□□ -2.49
VPS54Q9P1Q0 Y_RNA.180-201ENST00000363867 113 ntBASIC-0.54□□□□□ -2.5
VPS54Q9P1Q0 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.54□□□□□ -2.5
VPS54Q9P1Q0 RNA5SP169-201ENST00000517268 117 ntBASIC-0.54□□□□□ -2.5
VPS54Q9P1Q0 MIR4679-2-201ENST00000578358 77 ntBASIC-0.54□□□□□ -2.5
VPS54Q9P1Q0 MIR4536-1-201ENST00000583537 88 ntBASIC-0.54□□□□□ -2.5
VPS54Q9P1Q0 Y_RNA.464-201ENST00000384282 110 ntBASIC-0.55□□□□□ -2.5
VPS54Q9P1Q0 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.55□□□□□ -2.5
VPS54Q9P1Q0 SNORD56B-201ENST00000384713 71 ntBASIC-0.55□□□□□ -2.5
VPS54Q9P1Q0 Y_RNA.586-201ENST00000391146 98 ntBASIC-0.55□□□□□ -2.5
VPS54Q9P1Q0 MIR548E-201ENST00000408287 88 ntBASIC-0.55□□□□□ -2.5
VPS54Q9P1Q0 snoU13.13-201ENST00000458842 104 ntBASIC-0.55□□□□□ -2.5
VPS54Q9P1Q0 AC114755.3-201ENST00000481111 251 ntBASIC-0.55□□□□□ -2.5
VPS54Q9P1Q0 RNU6-65P-201ENST00000516332 98 ntBASIC-0.55□□□□□ -2.5
VPS54Q9P1Q0 MIR4432-201ENST00000581823 84 ntBASIC-0.55□□□□□ -2.5
VPS54Q9P1Q0 MIR4436A-201ENST00000585278 85 ntBASIC-0.55□□□□□ -2.5
VPS54Q9P1Q0 Y_RNA.218-201ENST00000364218 104 ntBASIC-0.56□□□□□ -2.5
VPS54Q9P1Q0 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.56□□□□□ -2.5
VPS54Q9P1Q0 RNU6-1212P-201ENST00000517023 104 ntBASIC-0.56□□□□□ -2.5
VPS54Q9P1Q0 MIR3140-201ENST00000583685 90 ntBASIC-0.56□□□□□ -2.5
VPS54Q9P1Q0 AP001180.6-201ENST00000584918 159 ntBASIC-0.56□□□□□ -2.5
VPS54Q9P1Q0 AC103810.7-201ENST00000607821 91 ntBASIC-0.56□□□□□ -2.5
VPS54Q9P1Q0 MIR3914-2-201ENST00000637339 95 ntBASIC-0.56□□□□□ -2.5
VPS54Q9P1Q0 RNU6-907P-201ENST00000390924 102 ntBASIC-0.57□□□□□ -2.5
VPS54Q9P1Q0 RNU6-795P-201ENST00000516323 103 ntBASIC-0.57□□□□□ -2.5
VPS54Q9P1Q0 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.57□□□□□ -2.5
VPS54Q9P1Q0 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.57□□□□□ -2.5
VPS54Q9P1Q0 RNA5SP66-201ENST00000517178 101 ntBASIC-0.57□□□□□ -2.5
VPS54Q9P1Q0 MIR5009-201ENST00000578736 100 ntBASIC-0.57□□□□□ -2.5
VPS54Q9P1Q0 SNORD115-25-201ENST00000362619 82 ntBASIC-0.58□□□□□ -2.5
VPS54Q9P1Q0 MIR216B-201ENST00000390186 82 ntBASIC-0.58□□□□□ -2.5
VPS54Q9P1Q0 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.58□□□□□ -2.5
VPS54Q9P1Q0 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.59□□□□□ -2.5
VPS54Q9P1Q0 RNU6-900P-201ENST00000384498 102 ntBASIC-0.59□□□□□ -2.5
VPS54Q9P1Q0 RNA5SP451-201ENST00000410588 110 ntBASIC-0.59□□□□□ -2.5
VPS54Q9P1Q0 MIR3681-201ENST00000580089 72 ntBASIC-0.59□□□□□ -2.5
VPS54Q9P1Q0 AC012531.4-201ENST00000616509 177 ntBASIC-0.59□□□□□ -2.5
VPS54Q9P1Q0 MIR101-1-201ENST00000362265 75 ntBASIC-0.6□□□□□ -2.51
VPS54Q9P1Q0 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.6□□□□□ -2.51
VPS54Q9P1Q0 RNY1P5-201ENST00000383890 115 ntBASIC-0.6□□□□□ -2.51
VPS54Q9P1Q0 SNORD90-201ENST00000391145 111 ntBASIC-0.6□□□□□ -2.51
VPS54Q9P1Q0 SNORA19.1-201ENST00000410656 129 ntBASIC-0.6□□□□□ -2.51
VPS54Q9P1Q0 RNU6-659P-201ENST00000516454 104 ntBASIC-0.6□□□□□ -2.51
VPS54Q9P1Q0 MIR4777-201ENST00000583710 86 ntBASIC-0.6□□□□□ -2.51
VPS54Q9P1Q0 Y_RNA.71-201ENST00000362892 104 ntBASIC-0.61□□□□□ -2.51
VPS54Q9P1Q0 RNU6-901P-201ENST00000384593 106 ntBASIC-0.61□□□□□ -2.51
VPS54Q9P1Q0 RNU6-813P-201ENST00000384691 107 ntBASIC-0.61□□□□□ -2.51
VPS54Q9P1Q0 MIR548A3-201ENST00000385297 97 ntBASIC-0.61□□□□□ -2.51
VPS54Q9P1Q0 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.61□□□□□ -2.51
VPS54Q9P1Q0 SNORD38.3-201ENST00000516599 73 ntBASIC-0.61□□□□□ -2.51
VPS54Q9P1Q0 Y_RNA.712-201ENST00000517011 92 ntBASIC-0.61□□□□□ -2.51
VPS54Q9P1Q0 MIR3064-201ENST00000581130 66 ntBASIC-0.61□□□□□ -2.51
VPS54Q9P1Q0 MIR4280-201ENST00000582178 76 ntBASIC-0.61□□□□□ -2.51
VPS54Q9P1Q0 SNORD45B-201ENST00000364617 72 ntBASIC-0.62□□□□□ -2.51
VPS54Q9P1Q0 RNU6-80P-201ENST00000384195 107 ntBASIC-0.62□□□□□ -2.51
VPS54Q9P1Q0 RNA5SP292-201ENST00000390974 118 ntBASIC-0.62□□□□□ -2.51
VPS54Q9P1Q0 U3.27-201ENST00000391237 200 ntBASIC-0.62□□□□□ -2.51
VPS54Q9P1Q0 SNORD4B-201ENST00000459083 72 ntBASIC-0.62□□□□□ -2.51
VPS54Q9P1Q0 RNU6-794P-201ENST00000517261 64 ntBASIC-0.62□□□□□ -2.51
VPS54Q9P1Q0 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.63□□□□□ -2.51
VPS54Q9P1Q0 RNU6-476P-201ENST00000384726 107 ntBASIC-0.63□□□□□ -2.51
VPS54Q9P1Q0 RNU6-644P-201ENST00000391155 98 ntBASIC-0.63□□□□□ -2.51
VPS54Q9P1Q0 RNU7-55P-201ENST00000459426 62 ntBASIC-0.63□□□□□ -2.51
VPS54Q9P1Q0 MIR5704-201ENST00000584029 77 ntBASIC-0.63□□□□□ -2.51
VPS54Q9P1Q0 AC093726.3-201ENST00000637588 150 ntBASIC-0.63□□□□□ -2.51
VPS54Q9P1Q0 RNU6-774P-201ENST00000363238 107 ntBASIC-0.64□□□□□ -2.51
VPS54Q9P1Q0 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.64□□□□□ -2.51
VPS54Q9P1Q0 MIR224-201ENST00000384889 81 ntBASIC-0.64□□□□□ -2.51
VPS54Q9P1Q0 RNU4-63P-201ENST00000411313 118 ntBASIC-0.64□□□□□ -2.51
VPS54Q9P1Q0 MIR4802-201ENST00000581881 80 ntBASIC-0.64□□□□□ -2.51
VPS54Q9P1Q0 AC104996.3-201ENST00000590718 94 ntBASIC-0.64□□□□□ -2.51
VPS54Q9P1Q0 RNU6-502P-201ENST00000362419 108 ntBASIC-0.65□□□□□ -2.51
VPS54Q9P1Q0 SNORA63.2-201ENST00000362603 126 ntBASIC-0.65□□□□□ -2.51
VPS54Q9P1Q0 SNORD114-14-201ENST00000362723 75 ntBASIC-0.65□□□□□ -2.51
VPS54Q9P1Q0 RNU6-990P-201ENST00000364385 104 ntBASIC-0.65□□□□□ -2.51
VPS54Q9P1Q0 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.65□□□□□ -2.51
VPS54Q9P1Q0 MIR4439-201ENST00000583746 80 ntBASIC-0.65□□□□□ -2.51
VPS54Q9P1Q0 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.66□□□□□ -2.52
VPS54Q9P1Q0 SNORA24B-201ENST00000384176 131 ntBASIC-0.66□□□□□ -2.52
VPS54Q9P1Q0 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.67□□□□□ -2.52
VPS54Q9P1Q0 SNORA3B-201ENST00000391305 131 ntBASIC-0.67□□□□□ -2.52
VPS54Q9P1Q0 MIR5589-201ENST00000579442 60 ntBASIC-0.67□□□□□ -2.52
VPS54Q9P1Q0 MIR3133-201ENST00000583157 78 ntBASIC-0.67□□□□□ -2.52
VPS54Q9P1Q0 MIR4493-201ENST00000584016 73 ntBASIC-0.67□□□□□ -2.52
VPS54Q9P1Q0 MIR8068-201ENST00000618032 68 ntBASIC-0.67□□□□□ -2.52
VPS54Q9P1Q0 U6.95-201ENST00000636931 70 ntBASIC-0.67□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 238.6 ms