Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 Y_RNA.607-201ENST00000410597 98 ntBASIC0.55□□□□□ -2.32
PDLIM4P50479 RNU6-848P-201ENST00000515948 107 ntBASIC0.55□□□□□ -2.32
PDLIM4P50479 RNU6-617P-201ENST00000516147 107 ntBASIC0.55□□□□□ -2.32
PDLIM4P50479 RNU6-473P-201ENST00000516164 107 ntBASIC0.55□□□□□ -2.32
PDLIM4P50479 SNORA72.7-201ENST00000516349 94 ntBASIC0.55□□□□□ -2.32
PDLIM4P50479 RNU6-1049P-201ENST00000516414 107 ntBASIC0.55□□□□□ -2.32
PDLIM4P50479 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.55□□□□□ -2.32
PDLIM4P50479 RNA5SP517-201ENST00000364724 117 ntBASIC0.54□□□□□ -2.32
PDLIM4P50479 RNY1P8-201ENST00000383970 114 ntBASIC0.54□□□□□ -2.32
PDLIM4P50479 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
PDLIM4P50479 RNA5SP227-201ENST00000516184 113 ntBASIC0.54□□□□□ -2.32
PDLIM4P50479 SNORA25.13-201ENST00000516395 103 ntBASIC0.54□□□□□ -2.32
PDLIM4P50479 RNU7-153P-201ENST00000516455 62 ntBASIC0.54□□□□□ -2.32
PDLIM4P50479 AC092634.7-201ENST00000621022 103 ntBASIC0.54□□□□□ -2.32
PDLIM4P50479 MIR494-201ENST00000349529 81 ntBASIC0.53□□□□□ -2.32
PDLIM4P50479 SNORA63.2-201ENST00000362603 126 ntBASIC0.53□□□□□ -2.32
PDLIM4P50479 RNY4P3-201ENST00000365254 95 ntBASIC0.53□□□□□ -2.32
PDLIM4P50479 MIR193B-201ENST00000384907 83 ntBASIC0.53□□□□□ -2.32
PDLIM4P50479 MIR936-201ENST00000401264 98 ntBASIC0.53□□□□□ -2.32
PDLIM4P50479 Y_RNA.611-201ENST00000410682 108 ntBASIC0.53□□□□□ -2.32
PDLIM4P50479 SNORA40.8-201ENST00000411034 126 ntBASIC0.53□□□□□ -2.32
PDLIM4P50479 AC022137.1-201ENST00000483735 151 ntBASIC0.53□□□□□ -2.32
PDLIM4P50479 RNU6-557P-201ENST00000516842 110 ntBASIC0.53□□□□□ -2.32
PDLIM4P50479 MIR7107-201ENST00000611489 80 ntBASIC0.53□□□□□ -2.32
PDLIM4P50479 RNU6-1051P-201ENST00000365471 102 ntBASIC0.52□□□□□ -2.33
PDLIM4P50479 Y_RNA.388-201ENST00000383919 113 ntBASIC0.52□□□□□ -2.33
PDLIM4P50479 RNU6-242P-201ENST00000384359 107 ntBASIC0.52□□□□□ -2.33
PDLIM4P50479 MIR548L-201ENST00000408303 86 ntBASIC0.52□□□□□ -2.33
PDLIM4P50479 RNU6-1057P-201ENST00000517162 102 ntBASIC0.52□□□□□ -2.33
PDLIM4P50479 AC018659.1-201ENST00000551083 169 ntBASIC0.52□□□□□ -2.33
PDLIM4P50479 MIR4666B-201ENST00000578142 81 ntBASIC0.52□□□□□ -2.33
PDLIM4P50479 AC073869.9-201ENST00000641610 120 ntBASIC0.52□□□□□ -2.33
PDLIM4P50479 Y_RNA.73-201ENST00000362910 113 ntBASIC0.51□□□□□ -2.33
PDLIM4P50479 RNU6-1276P-201ENST00000365372 104 ntBASIC0.51□□□□□ -2.33
PDLIM4P50479 SNORA24B-201ENST00000384176 131 ntBASIC0.51□□□□□ -2.33
PDLIM4P50479 MIR451A-201ENST00000385059 72 ntBASIC0.51□□□□□ -2.33
PDLIM4P50479 RNU6-269P-201ENST00000391077 97 ntBASIC0.51□□□□□ -2.33
PDLIM4P50479 FGF7P7-201ENST00000514120 227 ntBASIC0.51□□□□□ -2.33
PDLIM4P50479 RNU6-863P-201ENST00000515989 104 ntBASIC0.51□□□□□ -2.33
PDLIM4P50479 Y_RNA.660-201ENST00000516002 120 ntBASIC0.51□□□□□ -2.33
PDLIM4P50479 MIR5087-201ENST00000635826 76 ntBASIC0.51□□□□□ -2.33
PDLIM4P50479 SNORD114-23-201ENST00000363536 72 ntBASIC0.5□□□□□ -2.33
PDLIM4P50479 RNU1-141P-201ENST00000364623 158 ntBASIC0.5□□□□□ -2.33
PDLIM4P50479 RNU6-716P-201ENST00000365621 103 ntBASIC0.5□□□□□ -2.33
PDLIM4P50479 MIR518A1-201ENST00000385068 85 ntBASIC0.5□□□□□ -2.33
PDLIM4P50479 SNORD71-201ENST00000411292 86 ntBASIC0.5□□□□□ -2.33
PDLIM4P50479 AC098934.3-201ENST00000430450 190 ntBASIC0.5□□□□□ -2.33
PDLIM4P50479 MIR1273G-201ENST00000577677 100 ntBASIC0.5□□□□□ -2.33
PDLIM4P50479 MIR5706-201ENST00000579841 80 ntBASIC0.5□□□□□ -2.33
PDLIM4P50479 MIR548O2-201ENST00000616090 70 ntBASIC0.5□□□□□ -2.33
PDLIM4P50479 AC243829.3-201ENST00000622177 108 ntBASIC0.5□□□□□ -2.33
PDLIM4P50479 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.49□□□□□ -2.33
PDLIM4P50479 RNA5SP121-201ENST00000516537 101 ntBASIC0.49□□□□□ -2.33
PDLIM4P50479 Y_RNA.264-201ENST00000364665 102 ntBASIC0.48□□□□□ -2.33
PDLIM4P50479 Y_RNA.374-201ENST00000365606 101 ntBASIC0.48□□□□□ -2.33
PDLIM4P50479 MIR92A1-201ENST00000385233 78 ntBASIC0.48□□□□□ -2.33
PDLIM4P50479 MT-TY-201ENST00000387409 66 ntBASIC0.48□□□□□ -2.33
PDLIM4P50479 RNU2-59P-201ENST00000410482 191 ntBASIC0.48□□□□□ -2.33
PDLIM4P50479 uc_338.17-201ENST00000619633 179 ntBASIC0.48□□□□□ -2.33
PDLIM4P50479 AC010487.4-201ENST00000637027 61 ntBASIC0.48□□□□□ -2.33
PDLIM4P50479 RNA5SP457-201ENST00000363657 124 ntBASIC0.47□□□□□ -2.33
PDLIM4P50479 Y_RNA.219-201ENST00000364232 113 ntBASIC0.47□□□□□ -2.33
PDLIM4P50479 RNU6-945P-201ENST00000383947 107 ntBASIC0.47□□□□□ -2.33
PDLIM4P50479 RNU6-787P-201ENST00000384032 107 ntBASIC0.47□□□□□ -2.33
PDLIM4P50479 SNORD90-201ENST00000391145 111 ntBASIC0.47□□□□□ -2.33
PDLIM4P50479 RNU6-592P-201ENST00000411333 103 ntBASIC0.47□□□□□ -2.33
PDLIM4P50479 RNU4-54P-201ENST00000516428 129 ntBASIC0.47□□□□□ -2.33
PDLIM4P50479 RNU6-229P-201ENST00000516614 102 ntBASIC0.47□□□□□ -2.33
PDLIM4P50479 MIR4711-201ENST00000578274 70 ntBASIC0.47□□□□□ -2.33
PDLIM4P50479 RNU1-29P-201ENST00000606574 126 ntBASIC0.47□□□□□ -2.33
PDLIM4P50479 AC069503.3-201ENST00000618674 145 ntBASIC0.47□□□□□ -2.33
PDLIM4P50479 MIR3202-2-201ENST00000635980 79 ntBASIC0.47□□□□□ -2.33
PDLIM4P50479 RNU5F-1-201ENST00000362507 117 ntBASIC0.46□□□□□ -2.34
PDLIM4P50479 RNU6-315P-201ENST00000362666 107 ntBASIC0.46□□□□□ -2.34
PDLIM4P50479 RNA5SP173-201ENST00000364857 136 ntBASIC0.46□□□□□ -2.34
PDLIM4P50479 AC097510.1-201ENST00000510945 133 ntBASIC0.46□□□□□ -2.34
PDLIM4P50479 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
PDLIM4P50479 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.45□□□□□ -2.34
PDLIM4P50479 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.45□□□□□ -2.34
PDLIM4P50479 Y_RNA.316-201ENST00000365118 111 ntBASIC0.45□□□□□ -2.34
PDLIM4P50479 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.45□□□□□ -2.34
PDLIM4P50479 RNU6-129P-201ENST00000391022 107 ntBASIC0.45□□□□□ -2.34
PDLIM4P50479 SNORD77.2-201ENST00000391045 68 ntBASIC0.45□□□□□ -2.34
PDLIM4P50479 Y_RNA.606-201ENST00000410579 103 ntBASIC0.45□□□□□ -2.34
PDLIM4P50479 RNA5SP484-201ENST00000458857 111 ntBASIC0.45□□□□□ -2.34
PDLIM4P50479 RNU7-24P-201ENST00000458867 62 ntBASIC0.45□□□□□ -2.34
PDLIM4P50479 MIR3140-201ENST00000583685 90 ntBASIC0.45□□□□□ -2.34
PDLIM4P50479 SNORA25.18-201ENST00000607153 114 ntBASIC0.45□□□□□ -2.34
PDLIM4P50479 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.45□□□□□ -2.34
PDLIM4P50479 MIR924-201ENST00000638017 53 ntBASIC0.45□□□□□ -2.34
PDLIM4P50479 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.44□□□□□ -2.34
PDLIM4P50479 AC069271.1-201ENST00000445577 156 ntBASIC0.44□□□□□ -2.34
PDLIM4P50479 snoU13.17-201ENST00000458802 104 ntBASIC0.44□□□□□ -2.34
PDLIM4P50479 MIR4460-201ENST00000577862 86 ntBASIC0.44□□□□□ -2.34
PDLIM4P50479 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.44□□□□□ -2.34
PDLIM4P50479 MIR1245B-201ENST00000636115 69 ntBASIC0.44□□□□□ -2.34
PDLIM4P50479 SNORD44.1-201ENST00000363202 61 ntBASIC0.43□□□□□ -2.34
PDLIM4P50479 RNU6-686P-201ENST00000364839 107 ntBASIC0.43□□□□□ -2.34
PDLIM4P50479 RNU6-573P-201ENST00000383938 106 ntBASIC0.43□□□□□ -2.34
PDLIM4P50479 RNU6-1177P-201ENST00000391058 104 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 194 ms