Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RNU4-61P-201ENST00000411243 107 ntBASIC-1.68□□□□□ -2.68
HLA-DMBP28068 RNU6-65P-201ENST00000516332 98 ntBASIC-1.68□□□□□ -2.68
HLA-DMBP28068 AL442128.1-201ENST00000615151 90 ntBASIC-1.68□□□□□ -2.68
HLA-DMBP28068 MIR1246-201ENST00000636535 73 ntBASIC-1.68□□□□□ -2.68
HLA-DMBP28068 RNU6-312P-201ENST00000364629 107 ntBASIC-1.69□□□□□ -2.68
HLA-DMBP28068 Y_RNA.435-201ENST00000384095 112 ntBASIC-1.69□□□□□ -2.68
HLA-DMBP28068 RNU6-746P-201ENST00000384112 109 ntBASIC-1.69□□□□□ -2.68
HLA-DMBP28068 RNU6-409P-201ENST00000384114 104 ntBASIC-1.69□□□□□ -2.68
HLA-DMBP28068 MIR548D2-201ENST00000384955 97 ntBASIC-1.69□□□□□ -2.68
HLA-DMBP28068 MIR1302-6-201ENST00000408466 90 ntBASIC-1.69□□□□□ -2.68
HLA-DMBP28068 Y_RNA.626-201ENST00000411288 95 ntBASIC-1.69□□□□□ -2.68
HLA-DMBP28068 RNU7-24P-201ENST00000458867 62 ntBASIC-1.69□□□□□ -2.68
HLA-DMBP28068 RNU6-1137P-201ENST00000517073 99 ntBASIC-1.69□□□□□ -2.68
HLA-DMBP28068 MIR4520-1-201ENST00000582609 70 ntBASIC-1.69□□□□□ -2.68
HLA-DMBP28068 MIR4536-1-201ENST00000583537 88 ntBASIC-1.69□□□□□ -2.68
HLA-DMBP28068 AC090617.8-201ENST00000623339 167 ntBASIC-1.69□□□□□ -2.68
HLA-DMBP28068 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.7□□□□□ -2.68
HLA-DMBP28068 RNY4P27-201ENST00000363341 96 ntBASIC-1.7□□□□□ -2.68
HLA-DMBP28068 RNU4-40P-201ENST00000364351 143 ntBASIC-1.7□□□□□ -2.68
HLA-DMBP28068 RNU6-985P-201ENST00000410182 104 ntBASIC-1.7□□□□□ -2.68
HLA-DMBP28068 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.7□□□□□ -2.68
HLA-DMBP28068 RNU2-51P-201ENST00000410708 197 ntBASIC-1.7□□□□□ -2.68
HLA-DMBP28068 AC022028.1-201ENST00000412054 408 ntBASIC-1.7□□□□□ -2.68
HLA-DMBP28068 RNU5E-3P-201ENST00000515913 68 ntBASIC-1.7□□□□□ -2.68
HLA-DMBP28068 Y_RNA.804-201ENST00000615262 101 ntBASIC-1.7□□□□□ -2.68
HLA-DMBP28068 MIR8062-201ENST00000621515 85 ntBASIC-1.7□□□□□ -2.68
HLA-DMBP28068 SNORD50.2-201ENST00000365465 70 ntBASIC-1.71□□□□□ -2.68
HLA-DMBP28068 SNORA24B-201ENST00000384176 131 ntBASIC-1.71□□□□□ -2.68
HLA-DMBP28068 Y_RNA.512-201ENST00000384518 102 ntBASIC-1.71□□□□□ -2.68
HLA-DMBP28068 MT-TD-201ENST00000387419 68 ntBASIC-1.71□□□□□ -2.68
HLA-DMBP28068 MTND4P29-201ENST00000503122 1372 ntBASIC-1.72□□□□□ -2.68
HLA-DMBP28068 SNORD115-33-201ENST00000363723 82 ntBASIC-1.72□□□□□ -2.68
HLA-DMBP28068 SNORA26.4-201ENST00000391188 123 ntBASIC-1.72□□□□□ -2.68
HLA-DMBP28068 RNU6-918P-201ENST00000391219 106 ntBASIC-1.72□□□□□ -2.68
HLA-DMBP28068 SNORD75.2-201ENST00000408784 58 ntBASIC-1.72□□□□□ -2.68
HLA-DMBP28068 Y_RNA.619-201ENST00000410951 90 ntBASIC-1.72□□□□□ -2.68
HLA-DMBP28068 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.72□□□□□ -2.68
HLA-DMBP28068 AC134503.1-201ENST00000633048 54 ntBASIC-1.72□□□□□ -2.68
HLA-DMBP28068 RNU6-924P-201ENST00000362926 108 ntBASIC-1.73□□□□□ -2.69
HLA-DMBP28068 Y_RNA.155-201ENST00000363632 101 ntBASIC-1.73□□□□□ -2.69
HLA-DMBP28068 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.73□□□□□ -2.69
HLA-DMBP28068 RNA5SP136-201ENST00000410906 107 ntBASIC-1.73□□□□□ -2.69
HLA-DMBP28068 MTND5P20-201ENST00000448677 143 ntBASIC-1.73□□□□□ -2.69
HLA-DMBP28068 SNORD127-201ENST00000458892 86 ntBASIC-1.73□□□□□ -2.69
HLA-DMBP28068 SNORD63.1-201ENST00000516178 80 ntBASIC-1.73□□□□□ -2.69
HLA-DMBP28068 RNU7-121P-201ENST00000516604 62 ntBASIC-1.73□□□□□ -2.69
HLA-DMBP28068 MIR3121-201ENST00000579680 77 ntBASIC-1.73□□□□□ -2.69
HLA-DMBP28068 AC025521.1-201ENST00000621624 286 ntBASIC-1.73□□□□□ -2.69
HLA-DMBP28068 Y_RNA.507-201ENST00000384500 99 ntBASIC-1.74□□□□□ -2.69
HLA-DMBP28068 MIR548A1-201ENST00000385041 97 ntBASIC-1.74□□□□□ -2.69
HLA-DMBP28068 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.74□□□□□ -2.69
HLA-DMBP28068 SNORD58.1-201ENST00000391313 66 ntBASIC-1.74□□□□□ -2.69
HLA-DMBP28068 MIR548P-201ENST00000408336 84 ntBASIC-1.74□□□□□ -2.69
HLA-DMBP28068 RNU7-85P-201ENST00000458851 63 ntBASIC-1.74□□□□□ -2.69
HLA-DMBP28068 MIR3140-201ENST00000583685 90 ntBASIC-1.74□□□□□ -2.69
HLA-DMBP28068 MIR6502-201ENST00000617296 76 ntBASIC-1.74□□□□□ -2.69
HLA-DMBP28068 RNU6-132P-201ENST00000383863 107 ntBASIC-1.75□□□□□ -2.69
HLA-DMBP28068 RNU6-239P-201ENST00000390990 99 ntBASIC-1.75□□□□□ -2.69
HLA-DMBP28068 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.75□□□□□ -2.69
HLA-DMBP28068 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.75□□□□□ -2.69
HLA-DMBP28068 Y_RNA.702-201ENST00000516843 96 ntBASIC-1.75□□□□□ -2.69
HLA-DMBP28068 AC091912.2-201ENST00000624798 167 ntBASIC-1.75□□□□□ -2.69
HLA-DMBP28068 MIR3658-201ENST00000636291 56 ntBASIC-1.75□□□□□ -2.69
HLA-DMBP28068 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.76□□□□□ -2.69
HLA-DMBP28068 SNORD37.2-201ENST00000391075 66 ntBASIC-1.76□□□□□ -2.69
HLA-DMBP28068 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.76□□□□□ -2.69
HLA-DMBP28068 MIR548H3-201ENST00000408771 118 ntBASIC-1.76□□□□□ -2.69
HLA-DMBP28068 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.76□□□□□ -2.69
HLA-DMBP28068 AC130289.1-201ENST00000577321 73 ntBASIC-1.76□□□□□ -2.69
HLA-DMBP28068 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.77□□□□□ -2.69
HLA-DMBP28068 RNU6-1318P-201ENST00000365389 103 ntBASIC-1.77□□□□□ -2.69
HLA-DMBP28068 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.77□□□□□ -2.69
HLA-DMBP28068 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.77□□□□□ -2.69
HLA-DMBP28068 MIR548U-201ENST00000390728 81 ntBASIC-1.77□□□□□ -2.69
HLA-DMBP28068 DNAJC19P2-201ENST00000593340 302 ntBASIC-1.77□□□□□ -2.69
HLA-DMBP28068 AL160413.1-201ENST00000622780 310 ntBASIC-1.77□□□□□ -2.69
HLA-DMBP28068 RNA5SP26-201ENST00000362406 119 ntBASIC-1.78□□□□□ -2.69
HLA-DMBP28068 Y_RNA.216-201ENST00000364205 93 ntBASIC-1.78□□□□□ -2.69
HLA-DMBP28068 MTND2P23-201ENST00000422990 651 ntBASIC-1.78□□□□□ -2.69
HLA-DMBP28068 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.78□□□□□ -2.69
HLA-DMBP28068 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.79□□□□□ -2.7
HLA-DMBP28068 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.79□□□□□ -2.7
HLA-DMBP28068 MIR3064-201ENST00000581130 66 ntBASIC-1.79□□□□□ -2.7
HLA-DMBP28068 MIR6874-201ENST00000635894 71 ntBASIC-1.79□□□□□ -2.7
HLA-DMBP28068 MIR1255B2-201ENST00000408618 67 ntBASIC-1.8□□□□□ -2.7
HLA-DMBP28068 snoU13.17-201ENST00000458802 104 ntBASIC-1.8□□□□□ -2.7
HLA-DMBP28068 MIR3171-201ENST00000584270 74 ntBASIC-1.8□□□□□ -2.7
HLA-DMBP28068 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.8□□□□□ -2.7
HLA-DMBP28068 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.81□□□□□ -2.7
HLA-DMBP28068 RNU6-164P-201ENST00000364604 103 ntBASIC-1.81□□□□□ -2.7
HLA-DMBP28068 RNU6-635P-201ENST00000516651 102 ntBASIC-1.81□□□□□ -2.7
HLA-DMBP28068 AL513043.2-201ENST00000573941 143 ntBASIC-1.81□□□□□ -2.7
HLA-DMBP28068 AC104996.3-201ENST00000590718 94 ntBASIC-1.81□□□□□ -2.7
HLA-DMBP28068 Y_RNA.138-201ENST00000363462 102 ntBASIC-1.82□□□□□ -2.7
HLA-DMBP28068 SNORA33.1-201ENST00000364957 130 ntBASIC-1.82□□□□□ -2.7
HLA-DMBP28068 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.82□□□□□ -2.7
HLA-DMBP28068 RNU6-260P-201ENST00000384092 107 ntBASIC-1.82□□□□□ -2.7
HLA-DMBP28068 Y_RNA.509-201ENST00000384506 99 ntBASIC-1.82□□□□□ -2.7
HLA-DMBP28068 RNU6-816P-201ENST00000390914 107 ntBASIC-1.82□□□□□ -2.7
HLA-DMBP28068 RNU6-1268P-201ENST00000391214 107 ntBASIC-1.82□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms