Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 Y_RNA.283-201ENST00000364798 112 ntBASIC0.75□□□□□ -2.29
LIMCH1Q9UPQ0 RNU7-85P-201ENST00000458851 63 ntBASIC0.75□□□□□ -2.29
LIMCH1Q9UPQ0 RNU6-65P-201ENST00000516332 98 ntBASIC0.75□□□□□ -2.29
LIMCH1Q9UPQ0 RNA5SP94-201ENST00000516917 108 ntBASIC0.75□□□□□ -2.29
LIMCH1Q9UPQ0 MIR1273G-201ENST00000577677 100 ntBASIC0.75□□□□□ -2.29
LIMCH1Q9UPQ0 RNU6-1134P-201ENST00000365156 101 ntBASIC0.74□□□□□ -2.29
LIMCH1Q9UPQ0 TRDV1-202ENST00000621643 102 ntBASIC0.74□□□□□ -2.29
LIMCH1Q9UPQ0 Y_RNA.17-201ENST00000362433 111 ntBASIC0.73□□□□□ -2.29
LIMCH1Q9UPQ0 RNA5SP403-201ENST00000363598 108 ntBASIC0.73□□□□□ -2.29
LIMCH1Q9UPQ0 Y_RNA.558-201ENST00000384685 113 ntBASIC0.73□□□□□ -2.29
LIMCH1Q9UPQ0 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
LIMCH1Q9UPQ0 SCARNA16.5-201ENST00000517114 183 ntBASIC0.73□□□□□ -2.29
LIMCH1Q9UPQ0 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.73□□□□□ -2.29
LIMCH1Q9UPQ0 RNA5SP47-201ENST00000517230 109 ntBASIC0.73□□□□□ -2.29
LIMCH1Q9UPQ0 MIR4668-201ENST00000582284 70 ntBASIC0.73□□□□□ -2.29
LIMCH1Q9UPQ0 AC244669.1-204ENST00000621564 178 ntBASIC0.73□□□□□ -2.29
LIMCH1Q9UPQ0 Y_RNA.68-201ENST00000362881 102 ntBASIC0.72□□□□□ -2.29
LIMCH1Q9UPQ0 MIR508-201ENST00000384857 115 ntBASIC0.72□□□□□ -2.29
LIMCH1Q9UPQ0 RNU6-75P-201ENST00000515944 104 ntBASIC0.72□□□□□ -2.29
LIMCH1Q9UPQ0 RNU7-161P-201ENST00000517289 62 ntBASIC0.72□□□□□ -2.29
LIMCH1Q9UPQ0 AC018659.1-201ENST00000551083 169 ntBASIC0.72□□□□□ -2.29
LIMCH1Q9UPQ0 AC092634.7-201ENST00000621022 103 ntBASIC0.72□□□□□ -2.29
LIMCH1Q9UPQ0 Y_RNA.596-201ENST00000410462 109 ntBASIC0.71□□□□□ -2.3
LIMCH1Q9UPQ0 RNU6-402P-201ENST00000410678 103 ntBASIC0.71□□□□□ -2.3
LIMCH1Q9UPQ0 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.71□□□□□ -2.3
LIMCH1Q9UPQ0 RNU6-1265P-201ENST00000516342 103 ntBASIC0.71□□□□□ -2.3
LIMCH1Q9UPQ0 IGLL4P-201ENST00000614590 133 ntBASIC0.71□□□□□ -2.3
LIMCH1Q9UPQ0 AC067863.3-201ENST00000624172 122 ntBASIC0.71□□□□□ -2.3
LIMCH1Q9UPQ0 MIR6828-201ENST00000636181 60 ntBASIC0.71□□□□□ -2.3
LIMCH1Q9UPQ0 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.71□□□□□ -2.3
LIMCH1Q9UPQ0 RNU6-633P-201ENST00000362612 103 ntBASIC0.7□□□□□ -2.3
LIMCH1Q9UPQ0 RNY1P8-201ENST00000383970 114 ntBASIC0.7□□□□□ -2.3
LIMCH1Q9UPQ0 Y_RNA.620-201ENST00000411009 88 ntBASIC0.7□□□□□ -2.3
LIMCH1Q9UPQ0 Y_RNA.681-201ENST00000516445 113 ntBASIC0.7□□□□□ -2.3
LIMCH1Q9UPQ0 MIR4714-201ENST00000580728 77 ntBASIC0.7□□□□□ -2.3
LIMCH1Q9UPQ0 MTRNR2L2-201ENST00000604882 87 ntBASIC0.7□□□□□ -2.3
LIMCH1Q9UPQ0 RNU6-664P-201ENST00000362381 107 ntBASIC0.69□□□□□ -2.3
LIMCH1Q9UPQ0 Y_RNA.115-201ENST00000363272 98 ntBASIC0.69□□□□□ -2.3
LIMCH1Q9UPQ0 RNU6-219P-201ENST00000364728 107 ntBASIC0.69□□□□□ -2.3
LIMCH1Q9UPQ0 SNORD115-44-201ENST00000365391 82 ntBASIC0.69□□□□□ -2.3
LIMCH1Q9UPQ0 MIR450A2-201ENST00000385022 100 ntBASIC0.69□□□□□ -2.3
LIMCH1Q9UPQ0 MIR1236-201ENST00000408340 102 ntBASIC0.69□□□□□ -2.3
LIMCH1Q9UPQ0 RNU7-13P-201ENST00000516413 62 ntBASIC0.69□□□□□ -2.3
LIMCH1Q9UPQ0 RNY1P1-201ENST00000364372 112 ntBASIC0.68□□□□□ -2.3
LIMCH1Q9UPQ0 RNU6-675P-201ENST00000384236 104 ntBASIC0.68□□□□□ -2.3
LIMCH1Q9UPQ0 RNU6-820P-201ENST00000384273 107 ntBASIC0.68□□□□□ -2.3
LIMCH1Q9UPQ0 MIR92A1-201ENST00000385233 78 ntBASIC0.68□□□□□ -2.3
LIMCH1Q9UPQ0 Y_RNA.593-201ENST00000410292 98 ntBASIC0.68□□□□□ -2.3
LIMCH1Q9UPQ0 SNORD71-201ENST00000411292 86 ntBASIC0.68□□□□□ -2.3
LIMCH1Q9UPQ0 RN7SKP12-201ENST00000516275 143 ntBASIC0.68□□□□□ -2.3
LIMCH1Q9UPQ0 RNA5SP268-201ENST00000516828 124 ntBASIC0.68□□□□□ -2.3
LIMCH1Q9UPQ0 MIR4696-201ENST00000581431 70 ntBASIC0.68□□□□□ -2.3
LIMCH1Q9UPQ0 MIR924-201ENST00000638017 53 ntBASIC0.68□□□□□ -2.3
LIMCH1Q9UPQ0 SNORD73B-201ENST00000364394 72 ntBASIC0.67□□□□□ -2.3
LIMCH1Q9UPQ0 Y_RNA.239-201ENST00000364444 113 ntBASIC0.67□□□□□ -2.3
LIMCH1Q9UPQ0 SNORD101-201ENST00000384027 73 ntBASIC0.67□□□□□ -2.3
LIMCH1Q9UPQ0 Y_RNA.433-201ENST00000384089 102 ntBASIC0.67□□□□□ -2.3
LIMCH1Q9UPQ0 MIR548U-201ENST00000390728 81 ntBASIC0.67□□□□□ -2.3
LIMCH1Q9UPQ0 SNORA40.8-201ENST00000411034 126 ntBASIC0.67□□□□□ -2.3
LIMCH1Q9UPQ0 RNU7-104P-201ENST00000459398 79 ntBASIC0.67□□□□□ -2.3
LIMCH1Q9UPQ0 RNA5SP121-201ENST00000516537 101 ntBASIC0.67□□□□□ -2.3
LIMCH1Q9UPQ0 RNU6-267P-201ENST00000516714 103 ntBASIC0.67□□□□□ -2.3
LIMCH1Q9UPQ0 MIR3920-201ENST00000581751 86 ntBASIC0.67□□□□□ -2.3
LIMCH1Q9UPQ0 U6.100-201ENST00000636230 99 ntBASIC0.67□□□□□ -2.3
LIMCH1Q9UPQ0 RNU4-32P-201ENST00000363404 141 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 SNORA36.1-201ENST00000363424 132 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 RNU6-509P-201ENST00000363519 107 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 SNORD114-23-201ENST00000363536 72 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 RNA5SP517-201ENST00000364724 117 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 RNU6-811P-201ENST00000384069 107 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 SNORA8.2-201ENST00000384372 139 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 MIR519C-201ENST00000385053 87 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 RNA5SP227-201ENST00000516184 113 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 RNU6-287P-201ENST00000516230 98 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 uc_338.17-201ENST00000619633 179 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 MIR6513-201ENST00000621188 64 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 AC010487.4-201ENST00000637027 61 ntBASIC0.66□□□□□ -2.3
LIMCH1Q9UPQ0 MIRLET7F1-201ENST00000362202 87 ntBASIC0.65□□□□□ -2.31
LIMCH1Q9UPQ0 Y_RNA.207-201ENST00000364142 106 ntBASIC0.65□□□□□ -2.31
LIMCH1Q9UPQ0 RNU6-726P-201ENST00000364680 107 ntBASIC0.65□□□□□ -2.31
LIMCH1Q9UPQ0 RNU6-132P-201ENST00000383863 107 ntBASIC0.65□□□□□ -2.31
LIMCH1Q9UPQ0 SNORD41.1-201ENST00000391000 69 ntBASIC0.65□□□□□ -2.31
LIMCH1Q9UPQ0 MIR548L-201ENST00000408303 86 ntBASIC0.65□□□□□ -2.31
LIMCH1Q9UPQ0 MIR3064-201ENST00000581130 66 ntBASIC0.65□□□□□ -2.31
LIMCH1Q9UPQ0 AC104996.3-201ENST00000590718 94 ntBASIC0.65□□□□□ -2.31
LIMCH1Q9UPQ0 MIR4679-1-201ENST00000637619 75 ntBASIC0.65□□□□□ -2.31
LIMCH1Q9UPQ0 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
LIMCH1Q9UPQ0 RNU4-54P-201ENST00000516428 129 ntBASIC0.64□□□□□ -2.31
LIMCH1Q9UPQ0 SNORA18.5-201ENST00000516616 101 ntBASIC0.64□□□□□ -2.31
LIMCH1Q9UPQ0 RNA5SP257-201ENST00000363023 116 ntBASIC0.63□□□□□ -2.31
LIMCH1Q9UPQ0 SNORD115-27-201ENST00000364430 82 ntBASIC0.63□□□□□ -2.31
LIMCH1Q9UPQ0 RNU6-497P-201ENST00000365316 104 ntBASIC0.63□□□□□ -2.31
LIMCH1Q9UPQ0 RNU6-945P-201ENST00000383947 107 ntBASIC0.63□□□□□ -2.31
LIMCH1Q9UPQ0 Y_RNA.491-201ENST00000384417 107 ntBASIC0.63□□□□□ -2.31
LIMCH1Q9UPQ0 RNU7-74P-201ENST00000459104 62 ntBASIC0.63□□□□□ -2.31
LIMCH1Q9UPQ0 AC093729.1-201ENST00000513074 128 ntBASIC0.63□□□□□ -2.31
LIMCH1Q9UPQ0 RNA5SP330-201ENST00000517096 96 ntBASIC0.63□□□□□ -2.31
LIMCH1Q9UPQ0 RNU6-762P-201ENST00000517107 102 ntBASIC0.63□□□□□ -2.31
LIMCH1Q9UPQ0 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 318.5 ms