Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 RNU6-269P-201ENST00000391077 97 ntBASIC0.33□□□□□ -2.36
LIMA1Q9UHB6 AL035461.1-201ENST00000421490 332 ntBASIC0.33□□□□□ -2.36
LIMA1Q9UHB6 RNU6-75P-201ENST00000515944 104 ntBASIC0.33□□□□□ -2.36
LIMA1Q9UHB6 RNU6-863P-201ENST00000515989 104 ntBASIC0.33□□□□□ -2.36
LIMA1Q9UHB6 Y_RNA.283-201ENST00000364798 112 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 RNU6-644P-201ENST00000391155 98 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 RNU2-59P-201ENST00000410482 191 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 AL031737.1-201ENST00000450125 223 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 RNU7-85P-201ENST00000458851 63 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 Y_RNA.648-201ENST00000459455 110 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 RNU7-13P-201ENST00000516413 62 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 RNA5SP134-201ENST00000516492 96 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 MIR1273G-201ENST00000577677 100 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 MTRNR2L2-201ENST00000604882 87 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 MIR6779-201ENST00000617283 64 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 Y_RNA.818-201ENST00000618813 71 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 AC010487.4-201ENST00000637027 61 ntBASIC0.32□□□□□ -2.36
LIMA1Q9UHB6 MIR548L-201ENST00000408303 86 ntBASIC0.31□□□□□ -2.36
LIMA1Q9UHB6 RNU7-61P-201ENST00000515897 61 ntBASIC0.31□□□□□ -2.36
LIMA1Q9UHB6 Y_RNA.107-201ENST00000363190 121 ntBASIC0.3□□□□□ -2.36
LIMA1Q9UHB6 Y_RNA.205-201ENST00000364128 113 ntBASIC0.3□□□□□ -2.36
LIMA1Q9UHB6 VTRNA1-3-201ENST00000365645 89 ntBASIC0.3□□□□□ -2.36
LIMA1Q9UHB6 RNU6-1113P-201ENST00000384348 107 ntBASIC0.3□□□□□ -2.36
LIMA1Q9UHB6 RNA5SP193-201ENST00000410353 107 ntBASIC0.3□□□□□ -2.36
LIMA1Q9UHB6 AC108740.1-201ENST00000498629 225 ntBASIC0.3□□□□□ -2.36
LIMA1Q9UHB6 SNORA70.25-201ENST00000612741 95 ntBASIC0.3□□□□□ -2.36
LIMA1Q9UHB6 Y_RNA.93-201ENST00000363066 109 ntBASIC0.29□□□□□ -2.36
LIMA1Q9UHB6 RNA5SP62-201ENST00000363457 110 ntBASIC0.29□□□□□ -2.36
LIMA1Q9UHB6 RNU6-147P-201ENST00000383983 107 ntBASIC0.29□□□□□ -2.36
LIMA1Q9UHB6 Y_RNA.540-201ENST00000384638 111 ntBASIC0.29□□□□□ -2.36
LIMA1Q9UHB6 MIR519E-201ENST00000385075 84 ntBASIC0.29□□□□□ -2.36
LIMA1Q9UHB6 RNU6-466P-201ENST00000391224 103 ntBASIC0.29□□□□□ -2.36
LIMA1Q9UHB6 RNU6-1232P-201ENST00000516299 86 ntBASIC0.29□□□□□ -2.36
LIMA1Q9UHB6 Y_RNA.705-201ENST00000516862 110 ntBASIC0.29□□□□□ -2.36
LIMA1Q9UHB6 MIR924-201ENST00000638017 53 ntBASIC0.29□□□□□ -2.36
LIMA1Q9UHB6 SNORD58A-201ENST00000383875 65 ntBASIC0.28□□□□□ -2.36
LIMA1Q9UHB6 Y_RNA.423-201ENST00000384057 113 ntBASIC0.28□□□□□ -2.36
LIMA1Q9UHB6 Y_RNA.596-201ENST00000410462 109 ntBASIC0.28□□□□□ -2.36
LIMA1Q9UHB6 RNU6-887P-201ENST00000410660 100 ntBASIC0.28□□□□□ -2.36
LIMA1Q9UHB6 RNU6-287P-201ENST00000516230 98 ntBASIC0.28□□□□□ -2.36
LIMA1Q9UHB6 SNORA62.5-201ENST00000516634 120 ntBASIC0.28□□□□□ -2.36
LIMA1Q9UHB6 RNU6-158P-201ENST00000517104 100 ntBASIC0.28□□□□□ -2.36
LIMA1Q9UHB6 Y_RNA.207-201ENST00000364142 106 ntBASIC0.27□□□□□ -2.37
LIMA1Q9UHB6 SNORD115-44-201ENST00000365391 82 ntBASIC0.27□□□□□ -2.37
LIMA1Q9UHB6 Y_RNA.544-201ENST00000384650 113 ntBASIC0.27□□□□□ -2.37
LIMA1Q9UHB6 RNU6-972P-201ENST00000391208 107 ntBASIC0.27□□□□□ -2.37
LIMA1Q9UHB6 AC093423.1-201ENST00000440817 142 ntBASIC0.27□□□□□ -2.37
LIMA1Q9UHB6 RNA5SP484-201ENST00000458857 111 ntBASIC0.27□□□□□ -2.37
LIMA1Q9UHB6 MIR2113-201ENST00000459007 91 ntBASIC0.27□□□□□ -2.37
LIMA1Q9UHB6 MIR4696-201ENST00000581431 70 ntBASIC0.27□□□□□ -2.37
LIMA1Q9UHB6 AP001318.4-201ENST00000616637 121 ntBASIC0.27□□□□□ -2.37
LIMA1Q9UHB6 Y_RNA.348-201ENST00000365403 103 ntBASIC0.26□□□□□ -2.37
LIMA1Q9UHB6 RNU6-815P-201ENST00000384080 113 ntBASIC0.26□□□□□ -2.37
LIMA1Q9UHB6 MIR617-201ENST00000385030 97 ntBASIC0.26□□□□□ -2.37
LIMA1Q9UHB6 AC073261.1-201ENST00000429409 121 ntBASIC0.26□□□□□ -2.37
LIMA1Q9UHB6 MTATP8P2-201ENST00000435212 202 ntBASIC0.26□□□□□ -2.37
LIMA1Q9UHB6 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.26□□□□□ -2.37
LIMA1Q9UHB6 U7.3-201ENST00000616123 62 ntBASIC0.26□□□□□ -2.37
LIMA1Q9UHB6 RNU6-664P-201ENST00000362381 107 ntBASIC0.25□□□□□ -2.37
LIMA1Q9UHB6 SNORD101-201ENST00000384027 73 ntBASIC0.25□□□□□ -2.37
LIMA1Q9UHB6 SNORD4B-201ENST00000459083 72 ntBASIC0.25□□□□□ -2.37
LIMA1Q9UHB6 RNU6-162P-201ENST00000516228 103 ntBASIC0.25□□□□□ -2.37
LIMA1Q9UHB6 AC073869.9-201ENST00000641610 120 ntBASIC0.25□□□□□ -2.37
LIMA1Q9UHB6 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
LIMA1Q9UHB6 RNU6-640P-201ENST00000363693 105 ntBASIC0.24□□□□□ -2.37
LIMA1Q9UHB6 Y_RNA.290-201ENST00000364879 114 ntBASIC0.24□□□□□ -2.37
LIMA1Q9UHB6 RNU6-132P-201ENST00000383863 107 ntBASIC0.24□□□□□ -2.37
LIMA1Q9UHB6 MIR760-201ENST00000390220 80 ntBASIC0.24□□□□□ -2.37
LIMA1Q9UHB6 RNU6-848P-201ENST00000515948 107 ntBASIC0.24□□□□□ -2.37
LIMA1Q9UHB6 RNU6-617P-201ENST00000516147 107 ntBASIC0.24□□□□□ -2.37
LIMA1Q9UHB6 RNU6-473P-201ENST00000516164 107 ntBASIC0.24□□□□□ -2.37
LIMA1Q9UHB6 RNU6-1049P-201ENST00000516414 107 ntBASIC0.24□□□□□ -2.37
LIMA1Q9UHB6 NAMPTP3-201ENST00000569273 224 ntBASIC0.24□□□□□ -2.37
LIMA1Q9UHB6 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
LIMA1Q9UHB6 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.24□□□□□ -2.37
LIMA1Q9UHB6 MIRLET7F1-201ENST00000362202 87 ntBASIC0.23□□□□□ -2.37
LIMA1Q9UHB6 RNU6-509P-201ENST00000363519 107 ntBASIC0.23□□□□□ -2.37
LIMA1Q9UHB6 RNA5SP325-201ENST00000363756 130 ntBASIC0.23□□□□□ -2.37
LIMA1Q9UHB6 SNORD116-10-201ENST00000363791 102 ntBASIC0.23□□□□□ -2.37
LIMA1Q9UHB6 RNU1-141P-201ENST00000364623 158 ntBASIC0.23□□□□□ -2.37
LIMA1Q9UHB6 SNORA2A-201ENST00000383885 135 ntBASIC0.23□□□□□ -2.37
LIMA1Q9UHB6 MIR501-201ENST00000390204 84 ntBASIC0.23□□□□□ -2.37
LIMA1Q9UHB6 AC069113.3-201ENST00000521019 150 ntBASIC0.23□□□□□ -2.37
LIMA1Q9UHB6 MIR8087-201ENST00000612745 78 ntBASIC0.23□□□□□ -2.37
LIMA1Q9UHB6 Y_RNA.96-201ENST00000363092 109 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 Y_RNA.190-201ENST00000363964 101 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 RNU6-153P-201ENST00000364422 104 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 RNU6-32P-201ENST00000383948 107 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 RNU6-13P-201ENST00000384248 107 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 RNU6-905P-201ENST00000384434 107 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 Y_RNA.495-201ENST00000384435 112 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 RNU6-12P-201ENST00000384604 107 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 RNU6-41P-201ENST00000384741 107 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 HMGN2P22-201ENST00000427588 175 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 RNU7-74P-201ENST00000459104 62 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 RNU6-65P-201ENST00000516332 98 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 MIR5706-201ENST00000579841 80 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 MIR4536-1-201ENST00000583537 88 ntBASIC0.22□□□□□ -2.37
LIMA1Q9UHB6 RNA5SP457-201ENST00000363657 124 ntBASIC0.21□□□□□ -2.38
LIMA1Q9UHB6 RNA5SP128-201ENST00000365305 116 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 186.1 ms