Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC073261.1-201ENST00000429409 121 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 RNU7-85P-201ENST00000458851 63 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-848P-201ENST00000515948 107 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-617P-201ENST00000516147 107 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-473P-201ENST00000516164 107 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-795P-201ENST00000516323 103 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 RNU7-13P-201ENST00000516413 62 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-1049P-201ENST00000516414 107 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-62P-201ENST00000516526 102 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 AL513043.2-201ENST00000573941 143 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 Y_RNA.283-201ENST00000364798 112 ntBASIC0.13□□□□□ -2.39
ZNF540Q8NDQ6 MIR590-201ENST00000385008 97 ntBASIC0.13□□□□□ -2.39
ZNF540Q8NDQ6 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.13□□□□□ -2.39
ZNF540Q8NDQ6 MIR760-201ENST00000390220 80 ntBASIC0.13□□□□□ -2.39
ZNF540Q8NDQ6 RNY4P18-201ENST00000391107 89 ntBASIC0.13□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-243P-201ENST00000391140 107 ntBASIC0.13□□□□□ -2.39
ZNF540Q8NDQ6 RNA5SP299-201ENST00000391203 116 ntBASIC0.13□□□□□ -2.39
ZNF540Q8NDQ6 MIR1295A-201ENST00000408463 79 ntBASIC0.13□□□□□ -2.39
ZNF540Q8NDQ6 HMGN2P22-201ENST00000427588 175 ntBASIC0.13□□□□□ -2.39
ZNF540Q8NDQ6 Y_RNA.659-201ENST00000515994 113 ntBASIC0.13□□□□□ -2.39
ZNF540Q8NDQ6 Y_RNA.709-201ENST00000516952 92 ntBASIC0.13□□□□□ -2.39
ZNF540Q8NDQ6 SNORA42.1-201ENST00000363515 137 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 Y_RNA.273-201ENST00000364703 102 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 RNA5SP128-201ENST00000365305 116 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-1056P-201ENST00000383996 107 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 SNORA51.5-201ENST00000384126 131 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 MIR617-201ENST00000385030 97 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 Y_RNA.601-201ENST00000410500 113 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 MIR2113-201ENST00000459007 91 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 Y_RNA.648-201ENST00000459455 110 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-287P-201ENST00000516230 98 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-412P-201ENST00000516434 106 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 MIR4439-201ENST00000583746 80 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 AC096720.1-201ENST00000604441 183 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 AC103810.7-201ENST00000607821 91 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 U2.22-201ENST00000636441 106 ntBASIC0.12□□□□□ -2.39
ZNF540Q8NDQ6 Y_RNA.207-201ENST00000364142 106 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 SNORD45B-201ENST00000364617 72 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 RNU1-141P-201ENST00000364623 158 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-813P-201ENST00000384691 107 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 MIR548L-201ENST00000408303 86 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-109P-201ENST00000516364 107 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-184P-201ENST00000516514 107 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-789P-201ENST00000517105 102 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 NAMPTP3-201ENST00000569273 224 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 MIR5706-201ENST00000579841 80 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 MIR4696-201ENST00000581431 70 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 MIR548AD-201ENST00000584780 82 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 MIR499B-201ENST00000636498 73 ntBASIC0.11□□□□□ -2.39
ZNF540Q8NDQ6 Y_RNA.30-201ENST00000362572 97 ntBASIC0.1□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-1290P-201ENST00000362957 109 ntBASIC0.1□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-1125P-201ENST00000363601 107 ntBASIC0.1□□□□□ -2.39
ZNF540Q8NDQ6 SNORD115-44-201ENST00000365391 82 ntBASIC0.1□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-480P-201ENST00000384332 107 ntBASIC0.1□□□□□ -2.39
ZNF540Q8NDQ6 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.1□□□□□ -2.39
ZNF540Q8NDQ6 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.1□□□□□ -2.39
ZNF540Q8NDQ6 MIR4677-201ENST00000584153 80 ntBASIC0.1□□□□□ -2.39
ZNF540Q8NDQ6 MIR3925-201ENST00000584674 77 ntBASIC0.1□□□□□ -2.39
ZNF540Q8NDQ6 MIR4315-1-201ENST00000636800 73 ntBASIC0.1□□□□□ -2.39
ZNF540Q8NDQ6 MIR4315-2-201ENST00000640925 73 ntBASIC0.1□□□□□ -2.39
ZNF540Q8NDQ6 AC073869.9-201ENST00000641610 120 ntBASIC0.1□□□□□ -2.39
ZNF540Q8NDQ6 SNORA9.1-201ENST00000362412 131 ntBASIC0.09□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-215P-201ENST00000365169 102 ntBASIC0.09□□□□□ -2.4
ZNF540Q8NDQ6 Y_RNA.374-201ENST00000365606 101 ntBASIC0.09□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-132P-201ENST00000383863 107 ntBASIC0.09□□□□□ -2.4
ZNF540Q8NDQ6 Y_RNA.596-201ENST00000410462 109 ntBASIC0.09□□□□□ -2.4
ZNF540Q8NDQ6 SCARNA23-201ENST00000516060 130 ntBASIC0.09□□□□□ -2.4
ZNF540Q8NDQ6 Y_RNA.681-201ENST00000516445 113 ntBASIC0.09□□□□□ -2.4
ZNF540Q8NDQ6 MIR4768-201ENST00000585270 74 ntBASIC0.09□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-664P-201ENST00000362381 107 ntBASIC0.08□□□□□ -2.4
ZNF540Q8NDQ6 Y_RNA.125-201ENST00000363371 111 ntBASIC0.08□□□□□ -2.4
ZNF540Q8NDQ6 RNU4-36P-201ENST00000364294 144 ntBASIC0.08□□□□□ -2.4
ZNF540Q8NDQ6 SNORD114-9-201ENST00000364370 72 ntBASIC0.08□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-755P-201ENST00000364400 103 ntBASIC0.08□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-1325P-201ENST00000364905 105 ntBASIC0.08□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-644P-201ENST00000391155 98 ntBASIC0.08□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-466P-201ENST00000391224 103 ntBASIC0.08□□□□□ -2.4
ZNF540Q8NDQ6 Y_RNA.629-201ENST00000411368 105 ntBASIC0.08□□□□□ -2.4
ZNF540Q8NDQ6 MIR548AE1-201ENST00000583292 70 ntBASIC0.08□□□□□ -2.4
ZNF540Q8NDQ6 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 Y_RNA.10-201ENST00000362371 110 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-766P-201ENST00000362478 107 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-509P-201ENST00000363519 107 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 SNORD101-201ENST00000384027 73 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 SNORD20-201ENST00000384550 80 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 SNORD110-201ENST00000408189 75 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 AC006210.1-201ENST00000424882 111 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 SNORD4B-201ENST00000459083 72 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 RNU7-129P-201ENST00000516128 62 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-782P-201ENST00000516852 104 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 AC104408.1-201ENST00000605241 170 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 MIR6718-201ENST00000616153 80 ntBASIC0.07□□□□□ -2.4
ZNF540Q8NDQ6 MIRLET7F1-201ENST00000362202 87 ntBASIC0.06□□□□□ -2.4
ZNF540Q8NDQ6 RNA5SP214-201ENST00000363378 118 ntBASIC0.06□□□□□ -2.4
ZNF540Q8NDQ6 SNORD58A-201ENST00000383875 65 ntBASIC0.06□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-756P-201ENST00000383997 107 ntBASIC0.06□□□□□ -2.4
ZNF540Q8NDQ6 MIR643-201ENST00000385267 97 ntBASIC0.06□□□□□ -2.4
ZNF540Q8NDQ6 MT-TY-201ENST00000387409 66 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 176.3 ms