Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC069271.1-201ENST00000445577 156 ntBASIC0.53□□□□□ -2.32
CLRN3Q8NCR9 MIR6504-201ENST00000613520 61 ntBASIC0.53□□□□□ -2.32
CLRN3Q8NCR9 SNORA25.9-201ENST00000365087 128 ntBASIC0.52□□□□□ -2.33
CLRN3Q8NCR9 MIR548AG2-201ENST00000581228 64 ntBASIC0.52□□□□□ -2.33
CLRN3Q8NCR9 MIRLET7D-201ENST00000362263 87 ntBASIC0.51□□□□□ -2.33
CLRN3Q8NCR9 SNORD44.1-201ENST00000363202 61 ntBASIC0.51□□□□□ -2.33
CLRN3Q8NCR9 MIR488-201ENST00000365739 83 ntBASIC0.51□□□□□ -2.33
CLRN3Q8NCR9 MIR519E-201ENST00000385075 84 ntBASIC0.51□□□□□ -2.33
CLRN3Q8NCR9 AC026421.1-201ENST00000519101 163 ntBASIC0.51□□□□□ -2.33
CLRN3Q8NCR9 MIR4698-201ENST00000577795 80 ntBASIC0.51□□□□□ -2.33
CLRN3Q8NCR9 MIR5706-201ENST00000579841 80 ntBASIC0.51□□□□□ -2.33
CLRN3Q8NCR9 SNORD114-27-201ENST00000363766 70 ntBASIC0.5□□□□□ -2.33
CLRN3Q8NCR9 Y_RNA.191-201ENST00000363972 113 ntBASIC0.5□□□□□ -2.33
CLRN3Q8NCR9 MIR216A-201ENST00000385063 110 ntBASIC0.5□□□□□ -2.33
CLRN3Q8NCR9 MIR1276-201ENST00000408707 83 ntBASIC0.5□□□□□ -2.33
CLRN3Q8NCR9 AC104996.3-201ENST00000590718 94 ntBASIC0.5□□□□□ -2.33
CLRN3Q8NCR9 AC090625.1-201ENST00000357130 210 ntBASIC0.49□□□□□ -2.33
CLRN3Q8NCR9 MIRLET7F1-201ENST00000362202 87 ntBASIC0.49□□□□□ -2.33
CLRN3Q8NCR9 RNU1-93P-201ENST00000364704 169 ntBASIC0.49□□□□□ -2.33
CLRN3Q8NCR9 SNORA2A-201ENST00000383885 135 ntBASIC0.49□□□□□ -2.33
CLRN3Q8NCR9 MIR3973-201ENST00000579824 107 ntBASIC0.49□□□□□ -2.33
CLRN3Q8NCR9 MIR3064-201ENST00000581130 66 ntBASIC0.49□□□□□ -2.33
CLRN3Q8NCR9 U7.6-201ENST00000610841 64 ntBASIC0.49□□□□□ -2.33
CLRN3Q8NCR9 MIR6835-201ENST00000621552 64 ntBASIC0.49□□□□□ -2.33
CLRN3Q8NCR9 Y_RNA.423-201ENST00000384057 113 ntBASIC0.48□□□□□ -2.33
CLRN3Q8NCR9 SNORD116-22-201ENST00000384430 92 ntBASIC0.48□□□□□ -2.33
CLRN3Q8NCR9 RPS29P1-201ENST00000465274 159 ntBASIC0.48□□□□□ -2.33
CLRN3Q8NCR9 MIR8070-201ENST00000616510 88 ntBASIC0.48□□□□□ -2.33
CLRN3Q8NCR9 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
CLRN3Q8NCR9 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.48□□□□□ -2.33
CLRN3Q8NCR9 MIR373-201ENST00000362273 69 ntBASIC0.47□□□□□ -2.33
CLRN3Q8NCR9 RNU4-32P-201ENST00000363404 141 ntBASIC0.47□□□□□ -2.33
CLRN3Q8NCR9 RNU1-141P-201ENST00000364623 158 ntBASIC0.47□□□□□ -2.33
CLRN3Q8NCR9 RNU6-132P-201ENST00000383863 107 ntBASIC0.47□□□□□ -2.33
CLRN3Q8NCR9 Y_RNA.491-201ENST00000384417 107 ntBASIC0.47□□□□□ -2.33
CLRN3Q8NCR9 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
CLRN3Q8NCR9 RNY4P30-201ENST00000410216 95 ntBASIC0.47□□□□□ -2.33
CLRN3Q8NCR9 AC006210.1-201ENST00000424882 111 ntBASIC0.47□□□□□ -2.33
CLRN3Q8NCR9 MIR4452-201ENST00000583004 71 ntBASIC0.47□□□□□ -2.33
CLRN3Q8NCR9 MIR96-201ENST00000362288 78 ntBASIC0.46□□□□□ -2.34
CLRN3Q8NCR9 Y_RNA.164-201ENST00000363709 102 ntBASIC0.46□□□□□ -2.34
CLRN3Q8NCR9 MIR499A-201ENST00000384903 122 ntBASIC0.46□□□□□ -2.34
CLRN3Q8NCR9 MIR451A-201ENST00000385059 72 ntBASIC0.46□□□□□ -2.34
CLRN3Q8NCR9 U3.27-201ENST00000391237 200 ntBASIC0.46□□□□□ -2.34
CLRN3Q8NCR9 MIR1236-201ENST00000408340 102 ntBASIC0.46□□□□□ -2.34
CLRN3Q8NCR9 AL157398.1-201ENST00000452981 186 ntBASIC0.46□□□□□ -2.34
CLRN3Q8NCR9 RNA5SP484-201ENST00000458857 111 ntBASIC0.46□□□□□ -2.34
CLRN3Q8NCR9 RNU6-229P-201ENST00000516614 102 ntBASIC0.46□□□□□ -2.34
CLRN3Q8NCR9 CYP3A137P-201ENST00000562436 69 ntBASIC0.46□□□□□ -2.34
CLRN3Q8NCR9 MIR4752-201ENST00000579672 72 ntBASIC0.46□□□□□ -2.34
CLRN3Q8NCR9 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.46□□□□□ -2.34
CLRN3Q8NCR9 RNU6-1131P-201ENST00000364955 107 ntBASIC0.45□□□□□ -2.34
CLRN3Q8NCR9 SNORD114-22-201ENST00000365423 72 ntBASIC0.45□□□□□ -2.34
CLRN3Q8NCR9 SNORD110-201ENST00000408189 75 ntBASIC0.45□□□□□ -2.34
CLRN3Q8NCR9 AC093423.1-201ENST00000440817 142 ntBASIC0.45□□□□□ -2.34
CLRN3Q8NCR9 NAMPTP3-201ENST00000569273 224 ntBASIC0.45□□□□□ -2.34
CLRN3Q8NCR9 MIR4460-201ENST00000577862 86 ntBASIC0.45□□□□□ -2.34
CLRN3Q8NCR9 MIR4668-201ENST00000582284 70 ntBASIC0.45□□□□□ -2.34
CLRN3Q8NCR9 MIR6767-201ENST00000637302 66 ntBASIC0.45□□□□□ -2.34
CLRN3Q8NCR9 MIR103A1-201ENST00000362165 78 ntBASIC0.44□□□□□ -2.34
CLRN3Q8NCR9 RNU6-1327P-201ENST00000365302 105 ntBASIC0.44□□□□□ -2.34
CLRN3Q8NCR9 AC069503.3-201ENST00000618674 145 ntBASIC0.44□□□□□ -2.34
CLRN3Q8NCR9 MIR6755-201ENST00000619993 66 ntBASIC0.44□□□□□ -2.34
CLRN3Q8NCR9 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.44□□□□□ -2.34
CLRN3Q8NCR9 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.44□□□□□ -2.34
CLRN3Q8NCR9 RNY4P3-201ENST00000365254 95 ntBASIC0.43□□□□□ -2.34
CLRN3Q8NCR9 RNY1P4-201ENST00000384595 115 ntBASIC0.43□□□□□ -2.34
CLRN3Q8NCR9 RNY1P7-201ENST00000384743 110 ntBASIC0.43□□□□□ -2.34
CLRN3Q8NCR9 MIR760-201ENST00000390220 80 ntBASIC0.43□□□□□ -2.34
CLRN3Q8NCR9 Y_RNA.676-201ENST00000516393 96 ntBASIC0.43□□□□□ -2.34
CLRN3Q8NCR9 RNU6-844P-201ENST00000517175 102 ntBASIC0.43□□□□□ -2.34
CLRN3Q8NCR9 RNU1-29P-201ENST00000606574 126 ntBASIC0.43□□□□□ -2.34
CLRN3Q8NCR9 SNORA70.25-201ENST00000612741 95 ntBASIC0.43□□□□□ -2.34
CLRN3Q8NCR9 MIR508-201ENST00000384857 115 ntBASIC0.42□□□□□ -2.34
CLRN3Q8NCR9 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.42□□□□□ -2.34
CLRN3Q8NCR9 SNORA18.5-201ENST00000516616 101 ntBASIC0.42□□□□□ -2.34
CLRN3Q8NCR9 MIR6788-201ENST00000618842 66 ntBASIC0.42□□□□□ -2.34
CLRN3Q8NCR9 SNORA9.1-201ENST00000362412 131 ntBASIC0.41□□□□□ -2.34
CLRN3Q8NCR9 RNA5SP62-201ENST00000363457 110 ntBASIC0.41□□□□□ -2.34
CLRN3Q8NCR9 MIR519C-201ENST00000385053 87 ntBASIC0.41□□□□□ -2.34
CLRN3Q8NCR9 RNA5SP292-201ENST00000390974 118 ntBASIC0.41□□□□□ -2.34
CLRN3Q8NCR9 Y_RNA.620-201ENST00000411009 88 ntBASIC0.41□□□□□ -2.34
CLRN3Q8NCR9 AC073261.1-201ENST00000429409 121 ntBASIC0.41□□□□□ -2.34
CLRN3Q8NCR9 MIR151B-201ENST00000584249 96 ntBASIC0.41□□□□□ -2.34
CLRN3Q8NCR9 RNU6-633P-201ENST00000362612 103 ntBASIC0.4□□□□□ -2.35
CLRN3Q8NCR9 RNU6-1134P-201ENST00000365156 101 ntBASIC0.4□□□□□ -2.35
CLRN3Q8NCR9 RNA5SP128-201ENST00000365305 116 ntBASIC0.4□□□□□ -2.35
CLRN3Q8NCR9 MT-TY-201ENST00000387409 66 ntBASIC0.4□□□□□ -2.35
CLRN3Q8NCR9 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.4□□□□□ -2.35
CLRN3Q8NCR9 AL078603.1-201ENST00000603824 313 ntBASIC0.4□□□□□ -2.35
CLRN3Q8NCR9 SNORA63.2-201ENST00000362603 126 ntBASIC0.39□□□□□ -2.35
CLRN3Q8NCR9 SNORD115-37-201ENST00000363768 82 ntBASIC0.39□□□□□ -2.35
CLRN3Q8NCR9 RNU6-49P-201ENST00000384256 107 ntBASIC0.39□□□□□ -2.35
CLRN3Q8NCR9 RNA5SP220-201ENST00000516298 104 ntBASIC0.39□□□□□ -2.35
CLRN3Q8NCR9 RNU6-1223P-201ENST00000517124 104 ntBASIC0.39□□□□□ -2.35
CLRN3Q8NCR9 MIR5000-201ENST00000577717 103 ntBASIC0.39□□□□□ -2.35
CLRN3Q8NCR9 RNA5SP347-201ENST00000362445 119 ntBASIC0.38□□□□□ -2.35
CLRN3Q8NCR9 Y_RNA.224-201ENST00000364308 111 ntBASIC0.38□□□□□ -2.35
CLRN3Q8NCR9 MIR548J-201ENST00000408833 112 ntBASIC0.38□□□□□ -2.35
CLRN3Q8NCR9 RNU6-402P-201ENST00000410678 103 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 170 ms