Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNU6-65P-201ENST00000516332 98 ntBASIC-1.33□□□□□ -2.62
FOXA3P55318 AC026407.1-201ENST00000518369 204 ntBASIC-1.33□□□□□ -2.62
FOXA3P55318 MIR5591-201ENST00000578248 65 ntBASIC-1.33□□□□□ -2.62
FOXA3P55318 MIR3163-201ENST00000581592 73 ntBASIC-1.33□□□□□ -2.62
FOXA3P55318 Y_RNA.58-201ENST00000362807 102 ntBASIC-1.34□□□□□ -2.62
FOXA3P55318 RNY3P1-201ENST00000365085 102 ntBASIC-1.34□□□□□ -2.62
FOXA3P55318 Y_RNA.318-201ENST00000365131 97 ntBASIC-1.34□□□□□ -2.62
FOXA3P55318 Y_RNA.690-201ENST00000516603 95 ntBASIC-1.34□□□□□ -2.62
FOXA3P55318 AC026421.1-201ENST00000519101 163 ntBASIC-1.34□□□□□ -2.62
FOXA3P55318 MIR4520-1-201ENST00000582609 70 ntBASIC-1.34□□□□□ -2.62
FOXA3P55318 RNU4-32P-201ENST00000363404 141 ntBASIC-1.35□□□□□ -2.63
FOXA3P55318 SNORD115-22-201ENST00000364456 82 ntBASIC-1.35□□□□□ -2.63
FOXA3P55318 Y_RNA.276-201ENST00000364732 109 ntBASIC-1.35□□□□□ -2.63
FOXA3P55318 Y_RNA.292-201ENST00000364904 97 ntBASIC-1.35□□□□□ -2.63
FOXA3P55318 MIR507-201ENST00000385234 94 ntBASIC-1.35□□□□□ -2.63
FOXA3P55318 MIR759-201ENST00000390224 91 ntBASIC-1.35□□□□□ -2.63
FOXA3P55318 AC022028.1-201ENST00000412054 408 ntBASIC-1.35□□□□□ -2.63
FOXA3P55318 SNORD57-201ENST00000448188 72 ntBASIC-1.35□□□□□ -2.63
FOXA3P55318 RNA5SP147-201ENST00000516493 109 ntBASIC-1.35□□□□□ -2.63
FOXA3P55318 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.35□□□□□ -2.63
FOXA3P55318 MIR4643-201ENST00000577473 78 ntBASIC-1.35□□□□□ -2.63
FOXA3P55318 AC091912.2-201ENST00000624798 167 ntBASIC-1.35□□□□□ -2.63
FOXA3P55318 RNA5SP26-201ENST00000362406 119 ntBASIC-1.36□□□□□ -2.63
FOXA3P55318 SNORA63.2-201ENST00000362603 126 ntBASIC-1.36□□□□□ -2.63
FOXA3P55318 Y_RNA.70-201ENST00000362886 110 ntBASIC-1.36□□□□□ -2.63
FOXA3P55318 Y_RNA.121-201ENST00000363309 113 ntBASIC-1.36□□□□□ -2.63
FOXA3P55318 RNU6-275P-201ENST00000364910 107 ntBASIC-1.36□□□□□ -2.63
FOXA3P55318 SNORA33.1-201ENST00000364957 130 ntBASIC-1.36□□□□□ -2.63
FOXA3P55318 SNORA75.5-201ENST00000391291 81 ntBASIC-1.36□□□□□ -2.63
FOXA3P55318 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.36□□□□□ -2.63
FOXA3P55318 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.36□□□□□ -2.63
FOXA3P55318 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-1.36□□□□□ -2.63
FOXA3P55318 Y_RNA.686-201ENST00000516548 134 ntBASIC-1.36□□□□□ -2.63
FOXA3P55318 MIR6874-201ENST00000635894 71 ntBASIC-1.36□□□□□ -2.63
FOXA3P55318 U6.106-201ENST00000636360 105 ntBASIC-1.36□□□□□ -2.63
FOXA3P55318 MIR6844-201ENST00000637122 62 ntBASIC-1.36□□□□□ -2.63
FOXA3P55318 MIR369-201ENST00000362155 70 ntBASIC-1.37□□□□□ -2.63
FOXA3P55318 RNU6-363P-201ENST00000362895 105 ntBASIC-1.37□□□□□ -2.63
FOXA3P55318 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.37□□□□□ -2.63
FOXA3P55318 RNU6-623P-201ENST00000363143 105 ntBASIC-1.37□□□□□ -2.63
FOXA3P55318 RNY1P11-201ENST00000363759 113 ntBASIC-1.37□□□□□ -2.63
FOXA3P55318 Y_RNA.505-201ENST00000384489 102 ntBASIC-1.37□□□□□ -2.63
FOXA3P55318 MIR548A1-201ENST00000385041 97 ntBASIC-1.37□□□□□ -2.63
FOXA3P55318 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.37□□□□□ -2.63
FOXA3P55318 MIR3149-201ENST00000584629 83 ntBASIC-1.37□□□□□ -2.63
FOXA3P55318 MIR6129-201ENST00000616087 109 ntBASIC-1.37□□□□□ -2.63
FOXA3P55318 AC025521.1-201ENST00000621624 286 ntBASIC-1.37□□□□□ -2.63
FOXA3P55318 Y_RNA.155-201ENST00000363632 101 ntBASIC-1.38□□□□□ -2.63
FOXA3P55318 RNU6-132P-201ENST00000383863 107 ntBASIC-1.38□□□□□ -2.63
FOXA3P55318 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.38□□□□□ -2.63
FOXA3P55318 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.38□□□□□ -2.63
FOXA3P55318 RNA5SP266-201ENST00000410273 108 ntBASIC-1.38□□□□□ -2.63
FOXA3P55318 FGF7P6-202ENST00000451282 293 ntBASIC-1.38□□□□□ -2.63
FOXA3P55318 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-1.38□□□□□ -2.63
FOXA3P55318 RNU6-1018P-201ENST00000516577 106 ntBASIC-1.38□□□□□ -2.63
FOXA3P55318 CYP3A54P-201ENST00000566950 75 ntBASIC-1.38□□□□□ -2.63
FOXA3P55318 MIR4770-201ENST00000579149 58 ntBASIC-1.38□□□□□ -2.63
FOXA3P55318 RNU6-409P-201ENST00000384114 104 ntBASIC-1.39□□□□□ -2.63
FOXA3P55318 Y_RNA.527-201ENST00000384573 102 ntBASIC-1.39□□□□□ -2.63
FOXA3P55318 MIR203A-201ENST00000384836 110 ntBASIC-1.39□□□□□ -2.63
FOXA3P55318 RNU6-1009P-201ENST00000390996 107 ntBASIC-1.39□□□□□ -2.63
FOXA3P55318 AL078595.1-201ENST00000404458 226 ntBASIC-1.39□□□□□ -2.63
FOXA3P55318 SNORD75.2-201ENST00000408784 58 ntBASIC-1.39□□□□□ -2.63
FOXA3P55318 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.39□□□□□ -2.63
FOXA3P55318 AL353691.2-201ENST00000443795 59 ntBASIC-1.39□□□□□ -2.63
FOXA3P55318 Z83846.1-201ENST00000446798 265 ntBASIC-1.39□□□□□ -2.63
FOXA3P55318 RNU7-85P-201ENST00000458851 63 ntBASIC-1.39□□□□□ -2.63
FOXA3P55318 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.39□□□□□ -2.63
FOXA3P55318 AL442128.1-201ENST00000615151 90 ntBASIC-1.39□□□□□ -2.63
FOXA3P55318 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.4□□□□□ -2.63
FOXA3P55318 RNU6-164P-201ENST00000364604 103 ntBASIC-1.4□□□□□ -2.63
FOXA3P55318 Y_RNA.395-201ENST00000383945 109 ntBASIC-1.4□□□□□ -2.63
FOXA3P55318 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.4□□□□□ -2.63
FOXA3P55318 RNU6-260P-201ENST00000384092 107 ntBASIC-1.4□□□□□ -2.63
FOXA3P55318 Y_RNA.455-201ENST00000384230 98 ntBASIC-1.4□□□□□ -2.63
FOXA3P55318 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.4□□□□□ -2.63
FOXA3P55318 snoU13.17-201ENST00000458802 104 ntBASIC-1.4□□□□□ -2.63
FOXA3P55318 RNU7-24P-201ENST00000458867 62 ntBASIC-1.4□□□□□ -2.63
FOXA3P55318 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.4□□□□□ -2.63
FOXA3P55318 AC113195.1-201ENST00000579952 141 ntBASIC-1.4□□□□□ -2.63
FOXA3P55318 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.4□□□□□ -2.63
FOXA3P55318 Y_RNA.277-201ENST00000364754 102 ntBASIC-1.41□□□□□ -2.64
FOXA3P55318 Y_RNA.337-201ENST00000365312 102 ntBASIC-1.41□□□□□ -2.64
FOXA3P55318 SNORD50.2-201ENST00000365465 70 ntBASIC-1.41□□□□□ -2.64
FOXA3P55318 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.41□□□□□ -2.64
FOXA3P55318 SNORA24B-201ENST00000384176 131 ntBASIC-1.41□□□□□ -2.64
FOXA3P55318 Y_RNA.529-201ENST00000384586 119 ntBASIC-1.41□□□□□ -2.64
FOXA3P55318 MT-TW-201ENST00000387382 68 ntBASIC-1.41□□□□□ -2.64
FOXA3P55318 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.41□□□□□ -2.64
FOXA3P55318 SNORD127-201ENST00000458892 86 ntBASIC-1.41□□□□□ -2.64
FOXA3P55318 MTND1P19-201ENST00000511780 315 ntBASIC-1.41□□□□□ -2.64
FOXA3P55318 MIR6502-201ENST00000617296 76 ntBASIC-1.41□□□□□ -2.64
FOXA3P55318 Y_RNA.75-201ENST00000362927 97 ntBASIC-1.42□□□□□ -2.64
FOXA3P55318 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.42□□□□□ -2.64
FOXA3P55318 Y_RNA.213-201ENST00000364178 111 ntBASIC-1.42□□□□□ -2.64
FOXA3P55318 RNU6-80P-201ENST00000384195 107 ntBASIC-1.42□□□□□ -2.64
FOXA3P55318 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.42□□□□□ -2.64
FOXA3P55318 MIR548D2-201ENST00000384955 97 ntBASIC-1.42□□□□□ -2.64
FOXA3P55318 RNU6-412P-201ENST00000516434 106 ntBASIC-1.42□□□□□ -2.64
FOXA3P55318 MIR335-201ENST00000362173 94 ntBASIC-1.43□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms