Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 Y_RNA.532-201ENST00000384590 113 ntBASIC1.12□□□□□ -2.23
MSX2P35548 SNORD89-201ENST00000390981 114 ntBASIC1.12□□□□□ -2.23
MSX2P35548 SNORD77.2-201ENST00000391045 68 ntBASIC1.12□□□□□ -2.23
MSX2P35548 SNORA40.6-201ENST00000391153 128 ntBASIC1.12□□□□□ -2.23
MSX2P35548 RNU6-935P-201ENST00000410371 100 ntBASIC1.12□□□□□ -2.23
MSX2P35548 AC002350.1-201ENST00000490759 375 ntBASIC1.12□□□□□ -2.23
MSX2P35548 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
MSX2P35548 Y_RNA.207-201ENST00000364142 106 ntBASIC1.11□□□□□ -2.23
MSX2P35548 MIR889-201ENST00000401280 79 ntBASIC1.11□□□□□ -2.23
MSX2P35548 FABP5P4-201ENST00000437203 171 ntBASIC1.11□□□□□ -2.23
MSX2P35548 snoU13.17-201ENST00000458802 104 ntBASIC1.11□□□□□ -2.23
MSX2P35548 U7.7-201ENST00000459276 60 ntBASIC1.11□□□□□ -2.23
MSX2P35548 SNORD124-201ENST00000459577 104 ntBASIC1.11□□□□□ -2.23
MSX2P35548 OR2A41P-201ENST00000473586 105 ntBASIC1.11□□□□□ -2.23
MSX2P35548 RNU7-161P-201ENST00000517289 62 ntBASIC1.11□□□□□ -2.23
MSX2P35548 MIR4452-201ENST00000583004 71 ntBASIC1.11□□□□□ -2.23
MSX2P35548 AC145423.2-201ENST00000610631 239 ntBASIC1.11□□□□□ -2.23
MSX2P35548 AL136317.1-201ENST00000612653 226 ntBASIC1.11□□□□□ -2.23
MSX2P35548 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.11□□□□□ -2.23
MSX2P35548 RNU6-208P-201ENST00000362431 107 ntBASIC1.1□□□□□ -2.23
MSX2P35548 SNORD115-24-201ENST00000363528 82 ntBASIC1.1□□□□□ -2.23
MSX2P35548 SNORD105-201ENST00000386910 85 ntBASIC1.1□□□□□ -2.23
MSX2P35548 RNA5SP102-201ENST00000516865 106 ntBASIC1.1□□□□□ -2.23
MSX2P35548 MIR3140-201ENST00000583685 90 ntBASIC1.1□□□□□ -2.23
MSX2P35548 MIR3660-201ENST00000584845 100 ntBASIC1.1□□□□□ -2.23
MSX2P35548 AL078603.1-201ENST00000603824 313 ntBASIC1.1□□□□□ -2.23
MSX2P35548 Y_RNA.788-201ENST00000622394 112 ntBASIC1.1□□□□□ -2.23
MSX2P35548 Y_RNA.264-201ENST00000364665 102 ntBASIC1.09□□□□□ -2.23
MSX2P35548 MIR200A-201ENST00000384875 90 ntBASIC1.09□□□□□ -2.23
MSX2P35548 MIR6078-201ENST00000611069 100 ntBASIC1.09□□□□□ -2.23
MSX2P35548 MIR6734-201ENST00000621166 68 ntBASIC1.09□□□□□ -2.23
MSX2P35548 RNU6-1335P-201ENST00000365426 107 ntBASIC1.08□□□□□ -2.24
MSX2P35548 RNU6-42P-201ENST00000384165 107 ntBASIC1.08□□□□□ -2.24
MSX2P35548 SNORA24B-201ENST00000384176 131 ntBASIC1.08□□□□□ -2.24
MSX2P35548 SCARNA18B-201ENST00000458806 135 ntBASIC1.08□□□□□ -2.24
MSX2P35548 RNU6-287P-201ENST00000516230 98 ntBASIC1.08□□□□□ -2.24
MSX2P35548 MIR548AG2-201ENST00000581228 64 ntBASIC1.08□□□□□ -2.24
MSX2P35548 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.08□□□□□ -2.24
MSX2P35548 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
MSX2P35548 RNU5F-1-201ENST00000362507 117 ntBASIC1.07□□□□□ -2.24
MSX2P35548 SNORD115-44-201ENST00000365391 82 ntBASIC1.07□□□□□ -2.24
MSX2P35548 MIR451A-201ENST00000385059 72 ntBASIC1.07□□□□□ -2.24
MSX2P35548 MIR644A-201ENST00000385262 94 ntBASIC1.07□□□□□ -2.24
MSX2P35548 MIR942-201ENST00000401111 86 ntBASIC1.07□□□□□ -2.24
MSX2P35548 RNA5SP220-201ENST00000516298 104 ntBASIC1.07□□□□□ -2.24
MSX2P35548 RNU7-13P-201ENST00000516413 62 ntBASIC1.07□□□□□ -2.24
MSX2P35548 MIR3920-201ENST00000581751 86 ntBASIC1.07□□□□□ -2.24
MSX2P35548 U7.4-201ENST00000614961 63 ntBASIC1.07□□□□□ -2.24
MSX2P35548 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.07□□□□□ -2.24
MSX2P35548 SNORD114-24-201ENST00000365029 72 ntBASIC1.06□□□□□ -2.24
MSX2P35548 RNY4P3-201ENST00000365254 95 ntBASIC1.06□□□□□ -2.24
MSX2P35548 RNA5SP117-201ENST00000365294 118 ntBASIC1.06□□□□□ -2.24
MSX2P35548 SNORD114-22-201ENST00000365423 72 ntBASIC1.06□□□□□ -2.24
MSX2P35548 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.06□□□□□ -2.24
MSX2P35548 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
MSX2P35548 Y_RNA.12-201ENST00000362393 112 ntBASIC1.05□□□□□ -2.24
MSX2P35548 RNU6-1126P-201ENST00000384002 107 ntBASIC1.05□□□□□ -2.24
MSX2P35548 MIR573-201ENST00000384964 99 ntBASIC1.05□□□□□ -2.24
MSX2P35548 RNU6-380P-201ENST00000410207 107 ntBASIC1.05□□□□□ -2.24
MSX2P35548 AC074348.1-201ENST00000426503 132 ntBASIC1.05□□□□□ -2.24
MSX2P35548 MIR2113-201ENST00000459007 91 ntBASIC1.05□□□□□ -2.24
MSX2P35548 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.05□□□□□ -2.24
MSX2P35548 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
MSX2P35548 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
MSX2P35548 RNU7-104P-201ENST00000459398 79 ntBASIC1.04□□□□□ -2.24
MSX2P35548 RNA5SP255-201ENST00000516370 107 ntBASIC1.04□□□□□ -2.24
MSX2P35548 RNU6-135P-201ENST00000516769 101 ntBASIC1.04□□□□□ -2.24
MSX2P35548 RNU6-303P-201ENST00000517091 106 ntBASIC1.04□□□□□ -2.24
MSX2P35548 YWHAEP2-201ENST00000580066 112 ntBASIC1.04□□□□□ -2.24
MSX2P35548 YWHAEP3-201ENST00000582767 121 ntBASIC1.04□□□□□ -2.24
MSX2P35548 SNORD28-201ENST00000384706 75 ntBASIC1.03□□□□□ -2.24
MSX2P35548 RNU6-1052P-201ENST00000411398 104 ntBASIC1.03□□□□□ -2.24
MSX2P35548 RNU6-719P-201ENST00000516671 104 ntBASIC1.03□□□□□ -2.24
MSX2P35548 MIR4484-201ENST00000582855 83 ntBASIC1.03□□□□□ -2.24
MSX2P35548 MIR4639-201ENST00000584938 69 ntBASIC1.03□□□□□ -2.24
MSX2P35548 MIR1297-201ENST00000637311 77 ntBASIC1.03□□□□□ -2.24
MSX2P35548 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
MSX2P35548 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
MSX2P35548 SNORD18A-201ENST00000363753 72 ntBASIC1.02□□□□□ -2.25
MSX2P35548 U3.27-201ENST00000391237 200 ntBASIC1.02□□□□□ -2.25
MSX2P35548 RNU6-523P-201ENST00000516304 54 ntBASIC1.02□□□□□ -2.25
MSX2P35548 MIR3134-201ENST00000579433 74 ntBASIC1.02□□□□□ -2.25
MSX2P35548 MIR3612-201ENST00000579753 87 ntBASIC1.02□□□□□ -2.25
MSX2P35548 SNORD114-21-201ENST00000606412 72 ntBASIC1.02□□□□□ -2.25
MSX2P35548 AC244669.1-204ENST00000621564 178 ntBASIC1.02□□□□□ -2.25
MSX2P35548 RNU6-824P-201ENST00000363724 104 ntBASIC1.01□□□□□ -2.25
MSX2P35548 RNU6-340P-201ENST00000364005 107 ntBASIC1.01□□□□□ -2.25
MSX2P35548 Y_RNA.565-201ENST00000384719 101 ntBASIC1.01□□□□□ -2.25
MSX2P35548 MIR617-201ENST00000385030 97 ntBASIC1.01□□□□□ -2.25
MSX2P35548 RNU2-59P-201ENST00000410482 191 ntBASIC1.01□□□□□ -2.25
MSX2P35548 RNU6-807P-201ENST00000516805 107 ntBASIC1.01□□□□□ -2.25
MSX2P35548 RNU6-1057P-201ENST00000517162 102 ntBASIC1.01□□□□□ -2.25
MSX2P35548 AC025627.3-201ENST00000582078 182 ntBASIC1.01□□□□□ -2.25
MSX2P35548 MIR4661-201ENST00000582720 75 ntBASIC1.01□□□□□ -2.25
MSX2P35548 AC067863.3-201ENST00000624172 122 ntBASIC1.01□□□□□ -2.25
MSX2P35548 MIR96-201ENST00000362288 78 ntBASIC1□□□□□ -2.25
MSX2P35548 Y_RNA.606-201ENST00000410579 103 ntBASIC1□□□□□ -2.25
MSX2P35548 AC097510.1-201ENST00000510945 133 ntBASIC1□□□□□ -2.25
MSX2P35548 RNU6-469P-201ENST00000516253 101 ntBASIC1□□□□□ -2.25
MSX2P35548 RNA5SP47-201ENST00000517230 109 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 234.9 ms