Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 Y_RNA.68-201ENST00000362881 102 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 RNU6-1255P-201ENST00000363434 112 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 RNA5SP517-201ENST00000364724 117 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 Y_RNA.369-201ENST00000365568 117 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 RNU6-132P-201ENST00000383863 107 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 MIR508-201ENST00000384857 115 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 MIR140-201ENST00000385282 100 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.61□□□□□ -2.31
HOXD3P31249 RNU6-65P-201ENST00000516332 98 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 RNU6-135P-201ENST00000516769 101 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 MIR3920-201ENST00000581751 86 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 AC067863.3-201ENST00000624172 122 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 MIR6866-201ENST00000638146 69 ntBASIC0.61□□□□□ -2.31
HOXD3P31249 RNU6-110P-201ENST00000384508 104 ntBASIC0.6□□□□□ -2.31
HOXD3P31249 MIR146A-201ENST00000385201 99 ntBASIC0.6□□□□□ -2.31
HOXD3P31249 RNU6-351P-201ENST00000516097 100 ntBASIC0.6□□□□□ -2.31
HOXD3P31249 SCARNA16.5-201ENST00000517114 183 ntBASIC0.6□□□□□ -2.31
HOXD3P31249 MIR4696-201ENST00000581431 70 ntBASIC0.6□□□□□ -2.31
HOXD3P31249 MIR4668-201ENST00000582284 70 ntBASIC0.6□□□□□ -2.31
HOXD3P31249 AL590095.2-201ENST00000604136 117 ntBASIC0.6□□□□□ -2.31
HOXD3P31249 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.6□□□□□ -2.31
HOXD3P31249 MIR6835-201ENST00000621552 64 ntBASIC0.6□□□□□ -2.31
HOXD3P31249 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.59□□□□□ -2.31
HOXD3P31249 RNU4-32P-201ENST00000363404 141 ntBASIC0.59□□□□□ -2.31
HOXD3P31249 RNA5SP457-201ENST00000363657 124 ntBASIC0.59□□□□□ -2.31
HOXD3P31249 SNORD115-27-201ENST00000364430 82 ntBASIC0.59□□□□□ -2.31
HOXD3P31249 RNU6-726P-201ENST00000364680 107 ntBASIC0.59□□□□□ -2.31
HOXD3P31249 RNU6-294P-201ENST00000364999 102 ntBASIC0.59□□□□□ -2.31
HOXD3P31249 RNU4-45P-201ENST00000365469 141 ntBASIC0.59□□□□□ -2.31
HOXD3P31249 RNU6-402P-201ENST00000410678 103 ntBASIC0.59□□□□□ -2.31
HOXD3P31249 RNU6-287P-201ENST00000516230 98 ntBASIC0.59□□□□□ -2.31
HOXD3P31249 RNA5SP268-201ENST00000516828 124 ntBASIC0.59□□□□□ -2.31
HOXD3P31249 MIR548AG2-201ENST00000581228 64 ntBASIC0.59□□□□□ -2.31
HOXD3P31249 SNORA25.18-201ENST00000607153 114 ntBASIC0.59□□□□□ -2.31
HOXD3P31249 MIR6828-201ENST00000636181 60 ntBASIC0.59□□□□□ -2.31
HOXD3P31249 Y_RNA.17-201ENST00000362433 111 ntBASIC0.58□□□□□ -2.32
HOXD3P31249 Y_RNA.43-201ENST00000362670 111 ntBASIC0.58□□□□□ -2.32
HOXD3P31249 RNU6-1134P-201ENST00000365156 101 ntBASIC0.58□□□□□ -2.32
HOXD3P31249 RNA5SP292-201ENST00000390974 118 ntBASIC0.58□□□□□ -2.32
HOXD3P31249 MIR548L-201ENST00000408303 86 ntBASIC0.58□□□□□ -2.32
HOXD3P31249 Y_RNA.596-201ENST00000410462 109 ntBASIC0.58□□□□□ -2.32
HOXD3P31249 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.58□□□□□ -2.32
HOXD3P31249 RNA5SP227-201ENST00000516184 113 ntBASIC0.58□□□□□ -2.32
HOXD3P31249 RNU7-13P-201ENST00000516413 62 ntBASIC0.58□□□□□ -2.32
HOXD3P31249 RNU4-54P-201ENST00000516428 129 ntBASIC0.58□□□□□ -2.32
HOXD3P31249 RNU6-664P-201ENST00000362381 107 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 Y_RNA.207-201ENST00000364142 106 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 RNU6-219P-201ENST00000364728 107 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 SNORD101-201ENST00000384027 73 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 SNORA8.2-201ENST00000384372 139 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 SNORD116-22-201ENST00000384430 92 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 Y_RNA.593-201ENST00000410292 98 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 Y_RNA.620-201ENST00000411009 88 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 RNU7-153P-201ENST00000516455 62 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 MTRNR2L2-201ENST00000604882 87 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 MIR7107-201ENST00000611489 80 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 AC092634.7-201ENST00000621022 103 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 MIR6513-201ENST00000621188 64 ntBASIC0.57□□□□□ -2.32
HOXD3P31249 Y_RNA.115-201ENST00000363272 98 ntBASIC0.56□□□□□ -2.32
HOXD3P31249 MIR3064-201ENST00000581130 66 ntBASIC0.56□□□□□ -2.32
HOXD3P31249 MIR924-201ENST00000638017 53 ntBASIC0.56□□□□□ -2.32
HOXD3P31249 RNU6-1126P-201ENST00000384002 107 ntBASIC0.55□□□□□ -2.32
HOXD3P31249 Y_RNA.433-201ENST00000384089 102 ntBASIC0.55□□□□□ -2.32
HOXD3P31249 SNORD41.1-201ENST00000391000 69 ntBASIC0.55□□□□□ -2.32
HOXD3P31249 RNU6-269P-201ENST00000391077 97 ntBASIC0.55□□□□□ -2.32
HOXD3P31249 AC069271.1-201ENST00000445577 156 ntBASIC0.55□□□□□ -2.32
HOXD3P31249 Y_RNA.681-201ENST00000516445 113 ntBASIC0.55□□□□□ -2.32
HOXD3P31249 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.55□□□□□ -2.32
HOXD3P31249 RNA5SP62-201ENST00000363457 110 ntBASIC0.54□□□□□ -2.32
HOXD3P31249 SNORD114-23-201ENST00000363536 72 ntBASIC0.54□□□□□ -2.32
HOXD3P31249 SNORD90-201ENST00000391145 111 ntBASIC0.54□□□□□ -2.32
HOXD3P31249 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
HOXD3P31249 MIR936-201ENST00000401264 98 ntBASIC0.54□□□□□ -2.32
HOXD3P31249 RNU6-1052P-201ENST00000411398 104 ntBASIC0.54□□□□□ -2.32
HOXD3P31249 MIR2113-201ENST00000459007 91 ntBASIC0.54□□□□□ -2.32
HOXD3P31249 RNU6-719P-201ENST00000516671 104 ntBASIC0.54□□□□□ -2.32
HOXD3P31249 MIR4752-201ENST00000579672 72 ntBASIC0.54□□□□□ -2.32
HOXD3P31249 AC104996.3-201ENST00000590718 94 ntBASIC0.54□□□□□ -2.32
HOXD3P31249 RNU6-633P-201ENST00000362612 103 ntBASIC0.53□□□□□ -2.32
HOXD3P31249 SNORD118-201ENST00000363593 134 ntBASIC0.53□□□□□ -2.32
HOXD3P31249 Y_RNA.239-201ENST00000364444 113 ntBASIC0.53□□□□□ -2.32
HOXD3P31249 RNU6-945P-201ENST00000383947 107 ntBASIC0.53□□□□□ -2.32
HOXD3P31249 RNU6-811P-201ENST00000384069 107 ntBASIC0.53□□□□□ -2.32
HOXD3P31249 SNORA18.5-201ENST00000516616 101 ntBASIC0.53□□□□□ -2.32
HOXD3P31249 RNU6-762P-201ENST00000517107 102 ntBASIC0.53□□□□□ -2.32
HOXD3P31249 AC010487.4-201ENST00000637027 61 ntBASIC0.53□□□□□ -2.32
HOXD3P31249 MIR494-201ENST00000349529 81 ntBASIC0.52□□□□□ -2.33
HOXD3P31249 Y_RNA.73-201ENST00000362910 113 ntBASIC0.52□□□□□ -2.33
HOXD3P31249 MIR519E-201ENST00000385075 84 ntBASIC0.52□□□□□ -2.33
HOXD3P31249 SNORA40.8-201ENST00000411034 126 ntBASIC0.52□□□□□ -2.33
HOXD3P31249 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.52□□□□□ -2.33
HOXD3P31249 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.52□□□□□ -2.33
HOXD3P31249 MIR4679-1-201ENST00000637619 75 ntBASIC0.52□□□□□ -2.33
HOXD3P31249 RNU6-509P-201ENST00000363519 107 ntBASIC0.51□□□□□ -2.33
HOXD3P31249 SNORD73B-201ENST00000364394 72 ntBASIC0.51□□□□□ -2.33
HOXD3P31249 SNORD115-44-201ENST00000365391 82 ntBASIC0.51□□□□□ -2.33
HOXD3P31249 RNU6-675P-201ENST00000384236 104 ntBASIC0.51□□□□□ -2.33
HOXD3P31249 Y_RNA.491-201ENST00000384417 107 ntBASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 230.5 ms