Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC025033.1-201ENST00000463883 194 ntBASIC1.84□□□□□ -2.11
COL8A1P27658 RNU7-161P-201ENST00000517289 62 ntBASIC1.84□□□□□ -2.11
COL8A1P27658 MIR6132-201ENST00000622083 109 ntBASIC1.84□□□□□ -2.11
COL8A1P27658 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.83□□□□□ -2.12
COL8A1P27658 Y_RNA.250-201ENST00000364542 110 ntBASIC1.83□□□□□ -2.12
COL8A1P27658 RNA5SP190-201ENST00000365222 118 ntBASIC1.83□□□□□ -2.12
COL8A1P27658 RNU6V-201ENST00000384105 107 ntBASIC1.83□□□□□ -2.12
COL8A1P27658 MIR630-201ENST00000384957 97 ntBASIC1.83□□□□□ -2.12
COL8A1P27658 RNU7-40P-201ENST00000516397 64 ntBASIC1.83□□□□□ -2.12
COL8A1P27658 RNA5SP147-201ENST00000516493 109 ntBASIC1.83□□□□□ -2.12
COL8A1P27658 BX248123.2-201ENST00000606318 124 ntBASIC1.83□□□□□ -2.12
COL8A1P27658 MIR8074-201ENST00000615081 81 ntBASIC1.83□□□□□ -2.12
COL8A1P27658 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.82□□□□□ -2.12
COL8A1P27658 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
COL8A1P27658 Y_RNA.174-201ENST00000363781 105 ntBASIC1.82□□□□□ -2.12
COL8A1P27658 SNORD113-2-201ENST00000391082 72 ntBASIC1.82□□□□□ -2.12
COL8A1P27658 AP1B1P2-201ENST00000416196 106 ntBASIC1.82□□□□□ -2.12
COL8A1P27658 RNU6-1162P-201ENST00000384443 104 ntBASIC1.81□□□□□ -2.12
COL8A1P27658 RNA5SP200-201ENST00000516360 103 ntBASIC1.81□□□□□ -2.12
COL8A1P27658 SNORA31.14-201ENST00000516728 116 ntBASIC1.81□□□□□ -2.12
COL8A1P27658 AC018659.1-201ENST00000551083 169 ntBASIC1.81□□□□□ -2.12
COL8A1P27658 MIR548AD-201ENST00000584780 82 ntBASIC1.81□□□□□ -2.12
COL8A1P27658 AC106800.4-201ENST00000614905 153 ntBASIC1.81□□□□□ -2.12
COL8A1P27658 DLEU2_4.2-201ENST00000616613 58 ntBASIC1.81□□□□□ -2.12
COL8A1P27658 uc_338.16-201ENST00000621804 95 ntBASIC1.81□□□□□ -2.12
COL8A1P27658 Y_RNA.32-201ENST00000362589 110 ntBASIC1.8□□□□□ -2.12
COL8A1P27658 RNA5SP325-201ENST00000363756 130 ntBASIC1.8□□□□□ -2.12
COL8A1P27658 RNU6-990P-201ENST00000364385 104 ntBASIC1.8□□□□□ -2.12
COL8A1P27658 AC003989.2-201ENST00000440224 169 ntBASIC1.8□□□□□ -2.12
COL8A1P27658 AL157398.1-201ENST00000452981 186 ntBASIC1.8□□□□□ -2.12
COL8A1P27658 RNU7-104P-201ENST00000459398 79 ntBASIC1.8□□□□□ -2.12
COL8A1P27658 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.8□□□□□ -2.12
COL8A1P27658 MIR8081-201ENST00000611533 95 ntBASIC1.8□□□□□ -2.12
COL8A1P27658 RNA5SP276-201ENST00000362580 94 ntBASIC1.79□□□□□ -2.12
COL8A1P27658 RNU6-698P-201ENST00000363523 107 ntBASIC1.79□□□□□ -2.12
COL8A1P27658 RNU6-34P-201ENST00000364874 107 ntBASIC1.79□□□□□ -2.12
COL8A1P27658 MIR521-2-201ENST00000384818 87 ntBASIC1.79□□□□□ -2.12
COL8A1P27658 SNORD23.1-201ENST00000408212 104 ntBASIC1.79□□□□□ -2.12
COL8A1P27658 RNU7-74P-201ENST00000459104 62 ntBASIC1.79□□□□□ -2.12
COL8A1P27658 SNORA25.15-201ENST00000516487 89 ntBASIC1.79□□□□□ -2.12
COL8A1P27658 RNU6-165P-201ENST00000517170 99 ntBASIC1.79□□□□□ -2.12
COL8A1P27658 MIR4804-201ENST00000581683 73 ntBASIC1.79□□□□□ -2.12
COL8A1P27658 MIR8063-201ENST00000621930 81 ntBASIC1.79□□□□□ -2.12
COL8A1P27658 AC067863.3-201ENST00000624172 122 ntBASIC1.79□□□□□ -2.12
COL8A1P27658 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.79□□□□□ -2.12
COL8A1P27658 MIR302D-201ENST00000362275 68 ntBASIC1.78□□□□□ -2.12
COL8A1P27658 MIR548C-201ENST00000384815 97 ntBASIC1.78□□□□□ -2.12
COL8A1P27658 MIR517B-201ENST00000385102 67 ntBASIC1.78□□□□□ -2.12
COL8A1P27658 RNU1-119P-201ENST00000391122 165 ntBASIC1.78□□□□□ -2.12
COL8A1P27658 RNU7-56P-201ENST00000458744 62 ntBASIC1.78□□□□□ -2.12
COL8A1P27658 RNU6-980P-201ENST00000516925 103 ntBASIC1.78□□□□□ -2.12
COL8A1P27658 SNORD33-201ENST00000362761 85 ntBASIC1.77□□□□□ -2.13
COL8A1P27658 RNA5SP37-201ENST00000365420 130 ntBASIC1.77□□□□□ -2.13
COL8A1P27658 SNORA75.2-201ENST00000391138 150 ntBASIC1.77□□□□□ -2.13
COL8A1P27658 SNORA75.3-201ENST00000391231 150 ntBASIC1.77□□□□□ -2.13
COL8A1P27658 RNU1-123P-201ENST00000458950 160 ntBASIC1.77□□□□□ -2.13
COL8A1P27658 RNU7-119P-201ENST00000459279 63 ntBASIC1.77□□□□□ -2.13
COL8A1P27658 AC079804.2-201ENST00000490376 200 ntBASIC1.77□□□□□ -2.13
COL8A1P27658 RNA5SP182-201ENST00000516064 82 ntBASIC1.77□□□□□ -2.13
COL8A1P27658 RNA5SP480-201ENST00000516840 109 ntBASIC1.77□□□□□ -2.13
COL8A1P27658 MIR4303-201ENST00000581299 66 ntBASIC1.77□□□□□ -2.13
COL8A1P27658 AL773524.1-201ENST00000614065 229 ntBASIC1.77□□□□□ -2.13
COL8A1P27658 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.77□□□□□ -2.13
COL8A1P27658 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
COL8A1P27658 RNU4-52P-201ENST00000384209 138 ntBASIC1.76□□□□□ -2.13
COL8A1P27658 RNU6-1065P-201ENST00000384513 106 ntBASIC1.76□□□□□ -2.13
COL8A1P27658 MT-TY-201ENST00000387409 66 ntBASIC1.76□□□□□ -2.13
COL8A1P27658 AL356379.1-201ENST00000414105 126 ntBASIC1.76□□□□□ -2.13
COL8A1P27658 HMGN2P38-201ENST00000423806 265 ntBASIC1.76□□□□□ -2.13
COL8A1P27658 RNU7-174P-201ENST00000516248 59 ntBASIC1.76□□□□□ -2.13
COL8A1P27658 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
COL8A1P27658 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL8A1P27658 SNORD114-4-201ENST00000363962 75 ntBASIC1.75□□□□□ -2.13
COL8A1P27658 SNORD1A-201ENST00000364968 72 ntBASIC1.75□□□□□ -2.13
COL8A1P27658 AC104435.1-201ENST00000483483 166 ntBASIC1.75□□□□□ -2.13
COL8A1P27658 AC079140.2-201ENST00000506193 142 ntBASIC1.75□□□□□ -2.13
COL8A1P27658 MIR4713-201ENST00000582691 75 ntBASIC1.75□□□□□ -2.13
COL8A1P27658 ZNF355P-201ENST00000427301 3216 ntBASIC1.74□□□□□ -2.13
COL8A1P27658 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.74□□□□□ -2.13
COL8A1P27658 Y_RNA.540-201ENST00000384638 111 ntBASIC1.74□□□□□ -2.13
COL8A1P27658 MIR17-201ENST00000385012 84 ntBASIC1.74□□□□□ -2.13
COL8A1P27658 snoU13.9-201ENST00000458927 103 ntBASIC1.74□□□□□ -2.13
COL8A1P27658 AC019176.1-201ENST00000518519 225 ntBASIC1.74□□□□□ -2.13
COL8A1P27658 AC023827.1-201ENST00000569247 97 ntBASIC1.74□□□□□ -2.13
COL8A1P27658 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC1.74□□□□□ -2.13
COL8A1P27658 U4.4-201ENST00000620626 117 ntBASIC1.74□□□□□ -2.13
COL8A1P27658 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
COL8A1P27658 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
COL8A1P27658 MIR1276-201ENST00000408707 83 ntBASIC1.73□□□□□ -2.13
COL8A1P27658 AC048334.1-201ENST00000477975 159 ntBASIC1.73□□□□□ -2.13
COL8A1P27658 AC021146.9-201ENST00000512503 156 ntBASIC1.73□□□□□ -2.13
COL8A1P27658 U2.7-201ENST00000619197 100 ntBASIC1.73□□□□□ -2.13
COL8A1P27658 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
COL8A1P27658 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
COL8A1P27658 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.73□□□□□ -2.13
COL8A1P27658 RNU6-35P-201ENST00000384530 107 ntBASIC1.72□□□□□ -2.13
COL8A1P27658 RNA5SP233-201ENST00000459153 113 ntBASIC1.72□□□□□ -2.13
COL8A1P27658 MIR4460-201ENST00000577862 86 ntBASIC1.72□□□□□ -2.13
COL8A1P27658 MIR3937-201ENST00000580135 106 ntBASIC1.72□□□□□ -2.13
COL8A1P27658 AL157834.3-201ENST00000615543 103 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 177.6 ms