Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 MIR6828-201ENST00000636181 60 ntBASIC0.72□□□□□ -2.29
PCDHA1Q9Y5I3 SNORD115-24-201ENST00000363528 82 ntBASIC0.71□□□□□ -2.3
PCDHA1Q9Y5I3 RNU6-1229P-201ENST00000364295 107 ntBASIC0.71□□□□□ -2.3
PCDHA1Q9Y5I3 RNY1P8-201ENST00000383970 114 ntBASIC0.71□□□□□ -2.3
PCDHA1Q9Y5I3 Y_RNA.540-201ENST00000384638 111 ntBASIC0.71□□□□□ -2.3
PCDHA1Q9Y5I3 RNU6-813P-201ENST00000384691 107 ntBASIC0.71□□□□□ -2.3
PCDHA1Q9Y5I3 SCARNA16.5-201ENST00000517114 183 ntBASIC0.71□□□□□ -2.3
PCDHA1Q9Y5I3 AC012531.4-201ENST00000616509 177 ntBASIC0.71□□□□□ -2.3
PCDHA1Q9Y5I3 AC244669.1-204ENST00000621564 178 ntBASIC0.71□□□□□ -2.3
PCDHA1Q9Y5I3 Y_RNA.93-201ENST00000363066 109 ntBASIC0.7□□□□□ -2.3
PCDHA1Q9Y5I3 RNA5SP403-201ENST00000363598 108 ntBASIC0.7□□□□□ -2.3
PCDHA1Q9Y5I3 Y_RNA.466-201ENST00000384294 113 ntBASIC0.7□□□□□ -2.3
PCDHA1Q9Y5I3 MIR181B2-201ENST00000385004 89 ntBASIC0.7□□□□□ -2.3
PCDHA1Q9Y5I3 RNU6-243P-201ENST00000391140 107 ntBASIC0.7□□□□□ -2.3
PCDHA1Q9Y5I3 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.7□□□□□ -2.3
PCDHA1Q9Y5I3 SNORA63.4-201ENST00000362763 126 ntBASIC0.69□□□□□ -2.3
PCDHA1Q9Y5I3 Y_RNA.96-201ENST00000363092 109 ntBASIC0.69□□□□□ -2.3
PCDHA1Q9Y5I3 Y_RNA.544-201ENST00000384650 113 ntBASIC0.69□□□□□ -2.3
PCDHA1Q9Y5I3 RNU6-795P-201ENST00000516323 103 ntBASIC0.69□□□□□ -2.3
PCDHA1Q9Y5I3 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.69□□□□□ -2.3
PCDHA1Q9Y5I3 SNORA36.1-201ENST00000363424 132 ntBASIC0.68□□□□□ -2.3
PCDHA1Q9Y5I3 RNU6-158P-201ENST00000517104 100 ntBASIC0.68□□□□□ -2.3
PCDHA1Q9Y5I3 RNU7-161P-201ENST00000517289 62 ntBASIC0.68□□□□□ -2.3
PCDHA1Q9Y5I3 AC018659.1-201ENST00000551083 169 ntBASIC0.68□□□□□ -2.3
PCDHA1Q9Y5I3 MIR450A1-201ENST00000362262 91 ntBASIC0.67□□□□□ -2.3
PCDHA1Q9Y5I3 RNA5SP347-201ENST00000362445 119 ntBASIC0.67□□□□□ -2.3
PCDHA1Q9Y5I3 Y_RNA.221-201ENST00000364248 96 ntBASIC0.67□□□□□ -2.3
PCDHA1Q9Y5I3 Y_RNA.467-201ENST00000384297 102 ntBASIC0.67□□□□□ -2.3
PCDHA1Q9Y5I3 MIR548Z-201ENST00000584743 97 ntBASIC0.67□□□□□ -2.3
PCDHA1Q9Y5I3 AC092634.7-201ENST00000621022 103 ntBASIC0.67□□□□□ -2.3
PCDHA1Q9Y5I3 RNA5SP517-201ENST00000364724 117 ntBASIC0.66□□□□□ -2.3
PCDHA1Q9Y5I3 MIR936-201ENST00000401264 98 ntBASIC0.66□□□□□ -2.3
PCDHA1Q9Y5I3 RNU6-109P-201ENST00000516364 107 ntBASIC0.66□□□□□ -2.3
PCDHA1Q9Y5I3 RNU6-184P-201ENST00000516514 107 ntBASIC0.66□□□□□ -2.3
PCDHA1Q9Y5I3 Y_RNA.705-201ENST00000516862 110 ntBASIC0.66□□□□□ -2.3
PCDHA1Q9Y5I3 Y_RNA.107-201ENST00000363190 121 ntBASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 RNA5SP499-201ENST00000363982 119 ntBASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-147P-201ENST00000383983 107 ntBASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-524P-201ENST00000384270 107 ntBASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 MIR216A-201ENST00000385063 110 ntBASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-644P-201ENST00000391155 98 ntBASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-972P-201ENST00000391208 107 ntBASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 RN7SKP12-201ENST00000516275 143 ntBASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 RNA5SP268-201ENST00000516828 124 ntBASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 RNA5SP480-201ENST00000516840 109 ntBASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 AC103810.7-201ENST00000607821 91 ntBASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
PCDHA1Q9Y5I3 Y_RNA.81-201ENST00000362997 102 ntBASIC0.64□□□□□ -2.31
PCDHA1Q9Y5I3 SNORA8.2-201ENST00000384372 139 ntBASIC0.64□□□□□ -2.31
PCDHA1Q9Y5I3 SNORA40.8-201ENST00000411034 126 ntBASIC0.64□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-1265P-201ENST00000516342 103 ntBASIC0.64□□□□□ -2.31
PCDHA1Q9Y5I3 AL513043.2-201ENST00000573941 143 ntBASIC0.64□□□□□ -2.31
PCDHA1Q9Y5I3 AC025521.1-201ENST00000621624 286 ntBASIC0.64□□□□□ -2.31
PCDHA1Q9Y5I3 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.64□□□□□ -2.31
PCDHA1Q9Y5I3 Y_RNA.36-201ENST00000362602 112 ntBASIC0.63□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-945P-201ENST00000383947 107 ntBASIC0.63□□□□□ -2.31
PCDHA1Q9Y5I3 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.63□□□□□ -2.31
PCDHA1Q9Y5I3 AC067863.3-201ENST00000624172 122 ntBASIC0.63□□□□□ -2.31
PCDHA1Q9Y5I3 MIR2052-201ENST00000636055 55 ntBASIC0.63□□□□□ -2.31
PCDHA1Q9Y5I3 SNORD114-26-201ENST00000363543 72 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 SNORD118-201ENST00000363593 134 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-726P-201ENST00000364680 107 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-32P-201ENST00000383948 107 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-13P-201ENST00000384248 107 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-12P-201ENST00000384604 107 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-41P-201ENST00000384741 107 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 MIR92A1-201ENST00000385233 78 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 SNORD41.1-201ENST00000391000 69 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-887P-201ENST00000410660 100 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 AC098934.3-201ENST00000430450 190 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 MTATP8P2-201ENST00000435212 202 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 Y_RNA.648-201ENST00000459455 110 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 RNU4-54P-201ENST00000516428 129 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 RN7SL793P-201ENST00000583259 296 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 AP001318.4-201ENST00000616637 121 ntBASIC0.62□□□□□ -2.31
PCDHA1Q9Y5I3 SNORD58A-201ENST00000383875 65 ntBASIC0.61□□□□□ -2.31
PCDHA1Q9Y5I3 RNU7-104P-201ENST00000459398 79 ntBASIC0.61□□□□□ -2.31
PCDHA1Q9Y5I3 RNA5SP227-201ENST00000516184 113 ntBASIC0.61□□□□□ -2.31
PCDHA1Q9Y5I3 RNA5SP121-201ENST00000516537 101 ntBASIC0.61□□□□□ -2.31
PCDHA1Q9Y5I3 MIR518A1-201ENST00000385068 85 ntBASIC0.6□□□□□ -2.31
PCDHA1Q9Y5I3 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.6□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-229P-201ENST00000516614 102 ntBASIC0.6□□□□□ -2.31
PCDHA1Q9Y5I3 MIR4711-201ENST00000578274 70 ntBASIC0.6□□□□□ -2.31
PCDHA1Q9Y5I3 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.6□□□□□ -2.31
PCDHA1Q9Y5I3 SNORD115-44-201ENST00000365391 82 ntBASIC0.59□□□□□ -2.31
PCDHA1Q9Y5I3 RNY1P4-201ENST00000384595 115 ntBASIC0.59□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-466P-201ENST00000391224 103 ntBASIC0.59□□□□□ -2.31
PCDHA1Q9Y5I3 RNA5SP193-201ENST00000410353 107 ntBASIC0.59□□□□□ -2.31
PCDHA1Q9Y5I3 SNORD71-201ENST00000411292 86 ntBASIC0.59□□□□□ -2.31
PCDHA1Q9Y5I3 RNU7-61P-201ENST00000515897 61 ntBASIC0.59□□□□□ -2.31
PCDHA1Q9Y5I3 MIR7107-201ENST00000611489 80 ntBASIC0.59□□□□□ -2.31
PCDHA1Q9Y5I3 TRDV1-202ENST00000621643 102 ntBASIC0.59□□□□□ -2.31
PCDHA1Q9Y5I3 AC243829.3-201ENST00000622177 108 ntBASIC0.59□□□□□ -2.31
PCDHA1Q9Y5I3 RNU6-957P-201ENST00000363652 99 ntBASIC0.58□□□□□ -2.32
PCDHA1Q9Y5I3 RNU6-153P-201ENST00000364422 104 ntBASIC0.58□□□□□ -2.32
PCDHA1Q9Y5I3 Y_RNA.495-201ENST00000384435 112 ntBASIC0.58□□□□□ -2.32
PCDHA1Q9Y5I3 SNORA40.13-201ENST00000516379 120 ntBASIC0.58□□□□□ -2.32
PCDHA1Q9Y5I3 RNU7-13P-201ENST00000516413 62 ntBASIC0.58□□□□□ -2.32
PCDHA1Q9Y5I3 MIR3920-201ENST00000581751 86 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 250 ms