Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 SNORA31.25-201ENST00000517242 134 ntBASIC2.81□□□□□ -1.96
TRIM35Q9UPQ4 MIR3664-201ENST00000579074 99 ntBASIC2.81□□□□□ -1.96
TRIM35Q9UPQ4 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
TRIM35Q9UPQ4 RPS26P5-201ENST00000418544 335 ntBASIC2.8□□□□□ -1.96
TRIM35Q9UPQ4 RNU7-174P-201ENST00000516248 59 ntBASIC2.8□□□□□ -1.96
TRIM35Q9UPQ4 RNU7-161P-201ENST00000517289 62 ntBASIC2.8□□□□□ -1.96
TRIM35Q9UPQ4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
TRIM35Q9UPQ4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
TRIM35Q9UPQ4 SNORA48.3-201ENST00000391081 134 ntBASIC2.79□□□□□ -1.96
TRIM35Q9UPQ4 MIR938-201ENST00000401216 83 ntBASIC2.79□□□□□ -1.96
TRIM35Q9UPQ4 MIR548F3-201ENST00000408509 87 ntBASIC2.79□□□□□ -1.96
TRIM35Q9UPQ4 RNU7-102P-201ENST00000458948 62 ntBASIC2.79□□□□□ -1.96
TRIM35Q9UPQ4 AC036111.3-201ENST00000526389 112 ntBASIC2.79□□□□□ -1.96
TRIM35Q9UPQ4 U4.4-201ENST00000620626 117 ntBASIC2.79□□□□□ -1.96
TRIM35Q9UPQ4 AC027335.2-201ENST00000624030 375 ntBASIC2.79□□□□□ -1.96
TRIM35Q9UPQ4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
TRIM35Q9UPQ4 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
TRIM35Q9UPQ4 MIR4648-201ENST00000580107 72 ntBASIC2.78□□□□□ -1.96
TRIM35Q9UPQ4 SNORA6-201ENST00000384033 151 ntBASIC2.77□□□□□ -1.97
TRIM35Q9UPQ4 SNORA77B-201ENST00000578179 125 ntBASIC2.77□□□□□ -1.97
TRIM35Q9UPQ4 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.76□□□□□ -1.97
TRIM35Q9UPQ4 RNU7-104P-201ENST00000459398 79 ntBASIC2.76□□□□□ -1.97
TRIM35Q9UPQ4 AC021146.9-201ENST00000512503 156 ntBASIC2.76□□□□□ -1.97
TRIM35Q9UPQ4 MIR6873-201ENST00000622788 63 ntBASIC2.76□□□□□ -1.97
TRIM35Q9UPQ4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
TRIM35Q9UPQ4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
TRIM35Q9UPQ4 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
TRIM35Q9UPQ4 SNORD56.5-201ENST00000364281 72 ntBASIC2.75□□□□□ -1.97
TRIM35Q9UPQ4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC2.75□□□□□ -1.97
TRIM35Q9UPQ4 RNU7-40P-201ENST00000516397 64 ntBASIC2.75□□□□□ -1.97
TRIM35Q9UPQ4 SNORA31.14-201ENST00000516728 116 ntBASIC2.75□□□□□ -1.97
TRIM35Q9UPQ4 U2.7-201ENST00000619197 100 ntBASIC2.75□□□□□ -1.97
TRIM35Q9UPQ4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.75□□□□□ -1.97
TRIM35Q9UPQ4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
TRIM35Q9UPQ4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
TRIM35Q9UPQ4 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
TRIM35Q9UPQ4 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
TRIM35Q9UPQ4 Y_RNA.32-201ENST00000362589 110 ntBASIC2.74□□□□□ -1.97
TRIM35Q9UPQ4 RNU6-231P-201ENST00000517122 103 ntBASIC2.74□□□□□ -1.97
TRIM35Q9UPQ4 uc_338.16-201ENST00000621804 95 ntBASIC2.74□□□□□ -1.97
TRIM35Q9UPQ4 MIR219B-201ENST00000637023 88 ntBASIC2.74□□□□□ -1.97
TRIM35Q9UPQ4 Y_RNA.174-201ENST00000363781 105 ntBASIC2.73□□□□□ -1.97
TRIM35Q9UPQ4 MIR6132-201ENST00000622083 109 ntBASIC2.73□□□□□ -1.97
TRIM35Q9UPQ4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
TRIM35Q9UPQ4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
TRIM35Q9UPQ4 SNORD111-201ENST00000408139 94 ntBASIC2.72□□□□□ -1.97
TRIM35Q9UPQ4 ZNF355P-201ENST00000427301 3216 ntBASIC2.72□□□□□ -1.97
TRIM35Q9UPQ4 RNU1-123P-201ENST00000458950 160 ntBASIC2.72□□□□□ -1.97
TRIM35Q9UPQ4 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.72□□□□□ -1.97
TRIM35Q9UPQ4 RNU7-74P-201ENST00000459104 62 ntBASIC2.71□□□□□ -1.98
TRIM35Q9UPQ4 AC067863.3-201ENST00000624172 122 ntBASIC2.71□□□□□ -1.98
TRIM35Q9UPQ4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.71□□□□□ -1.98
TRIM35Q9UPQ4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.71□□□□□ -1.98
TRIM35Q9UPQ4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
TRIM35Q9UPQ4 MT-TY-201ENST00000387409 66 ntBASIC2.7□□□□□ -1.98
TRIM35Q9UPQ4 RNA5SP212-201ENST00000391223 107 ntBASIC2.7□□□□□ -1.98
TRIM35Q9UPQ4 RNU7-193P-201ENST00000516723 65 ntBASIC2.7□□□□□ -1.98
TRIM35Q9UPQ4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
TRIM35Q9UPQ4 SNORA3A-201ENST00000364113 130 ntBASIC2.69□□□□□ -1.98
TRIM35Q9UPQ4 SNORA41B-201ENST00000384785 128 ntBASIC2.69□□□□□ -1.98
TRIM35Q9UPQ4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
TRIM35Q9UPQ4 Y_RNA.783-201ENST00000613546 102 ntBASIC2.69□□□□□ -1.98
TRIM35Q9UPQ4 SNORD114-4-201ENST00000363962 75 ntBASIC2.68□□□□□ -1.98
TRIM35Q9UPQ4 RNU6ATAC29P-201ENST00000408088 125 ntBASIC2.68□□□□□ -1.98
TRIM35Q9UPQ4 MIR4804-201ENST00000581683 73 ntBASIC2.68□□□□□ -1.98
TRIM35Q9UPQ4 AL359821.1-201ENST00000605519 182 ntBASIC2.68□□□□□ -1.98
TRIM35Q9UPQ4 RNU1-119P-201ENST00000391122 165 ntBASIC2.67□□□□□ -1.98
TRIM35Q9UPQ4 MIR1261-201ENST00000408659 82 ntBASIC2.67□□□□□ -1.98
TRIM35Q9UPQ4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
TRIM35Q9UPQ4 snoU13.13-201ENST00000458842 104 ntBASIC2.67□□□□□ -1.98
TRIM35Q9UPQ4 AC108210.2-201ENST00000503681 201 ntBASIC2.67□□□□□ -1.98
TRIM35Q9UPQ4 RNA5SP160-201ENST00000364866 120 ntBASIC2.66□□□□□ -1.98
TRIM35Q9UPQ4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.66□□□□□ -1.98
TRIM35Q9UPQ4 MIR8074-201ENST00000615081 81 ntBASIC2.66□□□□□ -1.98
TRIM35Q9UPQ4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
TRIM35Q9UPQ4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
TRIM35Q9UPQ4 SNORD114-1-201ENST00000362705 72 ntBASIC2.65□□□□□ -1.99
TRIM35Q9UPQ4 RNU7-56P-201ENST00000458744 62 ntBASIC2.65□□□□□ -1.99
TRIM35Q9UPQ4 snoU13.15-201ENST00000459407 104 ntBASIC2.65□□□□□ -1.99
TRIM35Q9UPQ4 RNU6-165P-201ENST00000517170 99 ntBASIC2.65□□□□□ -1.99
TRIM35Q9UPQ4 MIR4460-201ENST00000577862 86 ntBASIC2.65□□□□□ -1.99
TRIM35Q9UPQ4 MIR548X-201ENST00000580069 75 ntBASIC2.65□□□□□ -1.99
TRIM35Q9UPQ4 MIR8063-201ENST00000621930 81 ntBASIC2.65□□□□□ -1.99
TRIM35Q9UPQ4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
TRIM35Q9UPQ4 MIRLET7G-201ENST00000362280 84 ntBASIC2.64□□□□□ -1.99
TRIM35Q9UPQ4 RNA5SP393-201ENST00000363423 117 ntBASIC2.64□□□□□ -1.99
TRIM35Q9UPQ4 MIR545-201ENST00000385085 106 ntBASIC2.64□□□□□ -1.99
TRIM35Q9UPQ4 RNU4ATAC4P-201ENST00000516307 126 ntBASIC2.64□□□□□ -1.99
TRIM35Q9UPQ4 SNORA40.16-201ENST00000517238 121 ntBASIC2.64□□□□□ -1.99
TRIM35Q9UPQ4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.64□□□□□ -1.99
TRIM35Q9UPQ4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
TRIM35Q9UPQ4 Y_RNA.246-201ENST00000364495 108 ntBASIC2.63□□□□□ -1.99
TRIM35Q9UPQ4 SNORA15B-2-201ENST00000384058 135 ntBASIC2.63□□□□□ -1.99
TRIM35Q9UPQ4 SNORA15B-1-201ENST00000384334 135 ntBASIC2.63□□□□□ -1.99
TRIM35Q9UPQ4 SNORA75.2-201ENST00000391138 150 ntBASIC2.63□□□□□ -1.99
TRIM35Q9UPQ4 SNORA75.3-201ENST00000391231 150 ntBASIC2.63□□□□□ -1.99
TRIM35Q9UPQ4 SNORD116.2-201ENST00000391251 93 ntBASIC2.63□□□□□ -1.99
TRIM35Q9UPQ4 Y_RNA.125-201ENST00000363371 111 ntBASIC2.62□□□□□ -1.99
TRIM35Q9UPQ4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.62□□□□□ -1.99
TRIM35Q9UPQ4 AL157834.3-201ENST00000615543 103 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 181.8 ms