Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.91□□□□□ -2.26
LIMCH1Q9UPQ0 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.91□□□□□ -2.26
LIMCH1Q9UPQ0 RNU6-1298P-201ENST00000362456 101 ntBASIC0.9□□□□□ -2.27
LIMCH1Q9UPQ0 Y_RNA.57-201ENST00000362806 113 ntBASIC0.9□□□□□ -2.27
LIMCH1Q9UPQ0 RNY4P30-201ENST00000410216 95 ntBASIC0.9□□□□□ -2.27
LIMCH1Q9UPQ0 AC138907.6-201ENST00000568401 126 ntBASIC0.9□□□□□ -2.27
LIMCH1Q9UPQ0 AC138869.1-201ENST00000568623 124 ntBASIC0.9□□□□□ -2.27
LIMCH1Q9UPQ0 RNU6-469P-201ENST00000516253 101 ntBASIC0.89□□□□□ -2.27
LIMCH1Q9UPQ0 RN7SL793P-201ENST00000583259 296 ntBASIC0.89□□□□□ -2.27
LIMCH1Q9UPQ0 U7.3-201ENST00000616123 62 ntBASIC0.89□□□□□ -2.27
LIMCH1Q9UPQ0 MALAT1.1-201ENST00000618249 95 ntBASIC0.89□□□□□ -2.27
LIMCH1Q9UPQ0 uc_338.16-201ENST00000621804 95 ntBASIC0.89□□□□□ -2.27
LIMCH1Q9UPQ0 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
LIMCH1Q9UPQ0 Y_RNA.220-201ENST00000364244 109 ntBASIC0.88□□□□□ -2.27
LIMCH1Q9UPQ0 MIR516A2-201ENST00000384888 90 ntBASIC0.88□□□□□ -2.27
LIMCH1Q9UPQ0 MIR516A1-201ENST00000385033 90 ntBASIC0.88□□□□□ -2.27
LIMCH1Q9UPQ0 RNU6-1254P-201ENST00000391266 104 ntBASIC0.88□□□□□ -2.27
LIMCH1Q9UPQ0 SNORD63B-201ENST00000411005 70 ntBASIC0.88□□□□□ -2.27
LIMCH1Q9UPQ0 AC092628.1-201ENST00000436250 252 ntBASIC0.88□□□□□ -2.27
LIMCH1Q9UPQ0 RNU7-106P-201ENST00000459514 67 ntBASIC0.88□□□□□ -2.27
LIMCH1Q9UPQ0 TRAJ51-201ENST00000504127 63 ntBASIC0.88□□□□□ -2.27
LIMCH1Q9UPQ0 MIR6866-201ENST00000638146 69 ntBASIC0.88□□□□□ -2.27
LIMCH1Q9UPQ0 MIR18A-201ENST00000362310 71 ntBASIC0.87□□□□□ -2.27
LIMCH1Q9UPQ0 Y_RNA.290-201ENST00000364879 114 ntBASIC0.87□□□□□ -2.27
LIMCH1Q9UPQ0 Y_RNA.369-201ENST00000365568 117 ntBASIC0.87□□□□□ -2.27
LIMCH1Q9UPQ0 MIR488-201ENST00000365739 83 ntBASIC0.87□□□□□ -2.27
LIMCH1Q9UPQ0 MIR146A-201ENST00000385201 99 ntBASIC0.87□□□□□ -2.27
LIMCH1Q9UPQ0 MIR519A1-201ENST00000385257 85 ntBASIC0.87□□□□□ -2.27
LIMCH1Q9UPQ0 RNU6-243P-201ENST00000391140 107 ntBASIC0.87□□□□□ -2.27
LIMCH1Q9UPQ0 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.87□□□□□ -2.27
LIMCH1Q9UPQ0 RNU6-162P-201ENST00000516228 103 ntBASIC0.87□□□□□ -2.27
LIMCH1Q9UPQ0 SNORA31.14-201ENST00000516728 116 ntBASIC0.87□□□□□ -2.27
LIMCH1Q9UPQ0 MIR5582-201ENST00000579697 68 ntBASIC0.87□□□□□ -2.27
LIMCH1Q9UPQ0 MIR4653-201ENST00000585107 83 ntBASIC0.87□□□□□ -2.27
LIMCH1Q9UPQ0 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
LIMCH1Q9UPQ0 SNORD36A-201ENST00000362874 73 ntBASIC0.86□□□□□ -2.27
LIMCH1Q9UPQ0 SNORD116-10-201ENST00000363791 102 ntBASIC0.86□□□□□ -2.27
LIMCH1Q9UPQ0 Y_RNA.190-201ENST00000363964 101 ntBASIC0.86□□□□□ -2.27
LIMCH1Q9UPQ0 RNA5SP222-201ENST00000411039 105 ntBASIC0.86□□□□□ -2.27
LIMCH1Q9UPQ0 AL513043.2-201ENST00000573941 143 ntBASIC0.86□□□□□ -2.27
LIMCH1Q9UPQ0 Y_RNA.32-201ENST00000362589 110 ntBASIC0.85□□□□□ -2.27
LIMCH1Q9UPQ0 RNA5SP245-201ENST00000364239 121 ntBASIC0.85□□□□□ -2.27
LIMCH1Q9UPQ0 RNY1P4-201ENST00000384595 115 ntBASIC0.85□□□□□ -2.27
LIMCH1Q9UPQ0 PSMC1P5-201ENST00000512850 177 ntBASIC0.85□□□□□ -2.27
LIMCH1Q9UPQ0 AC025521.1-201ENST00000621624 286 ntBASIC0.85□□□□□ -2.27
LIMCH1Q9UPQ0 Y_RNA.43-201ENST00000362670 111 ntBASIC0.84□□□□□ -2.27
LIMCH1Q9UPQ0 MIR216A-201ENST00000385063 110 ntBASIC0.84□□□□□ -2.27
LIMCH1Q9UPQ0 Y_RNA.809-201ENST00000516058 95 ntBASIC0.84□□□□□ -2.27
LIMCH1Q9UPQ0 MIR5000-201ENST00000577717 103 ntBASIC0.84□□□□□ -2.27
LIMCH1Q9UPQ0 RNU6-1260P-201ENST00000362944 107 ntBASIC0.83□□□□□ -2.28
LIMCH1Q9UPQ0 RNU6-1255P-201ENST00000363434 112 ntBASIC0.83□□□□□ -2.28
LIMCH1Q9UPQ0 RNU6-1131P-201ENST00000364955 107 ntBASIC0.83□□□□□ -2.28
LIMCH1Q9UPQ0 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.83□□□□□ -2.28
LIMCH1Q9UPQ0 AC244505.6-201ENST00000452829 130 ntBASIC0.83□□□□□ -2.28
LIMCH1Q9UPQ0 RNU7-195P-201ENST00000458793 62 ntBASIC0.83□□□□□ -2.28
LIMCH1Q9UPQ0 RNU6-844P-201ENST00000517175 102 ntBASIC0.83□□□□□ -2.28
LIMCH1Q9UPQ0 MIR3678-201ENST00000578455 94 ntBASIC0.83□□□□□ -2.28
LIMCH1Q9UPQ0 Y_RNA.178-201ENST00000363832 102 ntBASIC0.82□□□□□ -2.28
LIMCH1Q9UPQ0 RNU6-49P-201ENST00000384256 107 ntBASIC0.82□□□□□ -2.28
LIMCH1Q9UPQ0 RNY1P7-201ENST00000384743 110 ntBASIC0.82□□□□□ -2.28
LIMCH1Q9UPQ0 AL606490.4-201ENST00000423117 127 ntBASIC0.82□□□□□ -2.28
LIMCH1Q9UPQ0 AC097635.1-201ENST00000450678 155 ntBASIC0.82□□□□□ -2.28
LIMCH1Q9UPQ0 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.82□□□□□ -2.28
LIMCH1Q9UPQ0 Y_RNA.30-201ENST00000362572 97 ntBASIC0.81□□□□□ -2.28
LIMCH1Q9UPQ0 MIR599-201ENST00000385069 95 ntBASIC0.81□□□□□ -2.28
LIMCH1Q9UPQ0 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.81□□□□□ -2.28
LIMCH1Q9UPQ0 MIR4639-201ENST00000584938 69 ntBASIC0.81□□□□□ -2.28
LIMCH1Q9UPQ0 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.81□□□□□ -2.28
LIMCH1Q9UPQ0 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.81□□□□□ -2.28
LIMCH1Q9UPQ0 RNU6-1229P-201ENST00000364295 107 ntBASIC0.8□□□□□ -2.28
LIMCH1Q9UPQ0 SNORA36.2-201ENST00000384004 127 ntBASIC0.8□□□□□ -2.28
LIMCH1Q9UPQ0 MIR644A-201ENST00000385262 94 ntBASIC0.8□□□□□ -2.28
LIMCH1Q9UPQ0 Y_RNA.648-201ENST00000459455 110 ntBASIC0.8□□□□□ -2.28
LIMCH1Q9UPQ0 RNA5SP436-201ENST00000516020 115 ntBASIC0.8□□□□□ -2.28
LIMCH1Q9UPQ0 AC026421.1-201ENST00000519101 163 ntBASIC0.8□□□□□ -2.28
LIMCH1Q9UPQ0 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.8□□□□□ -2.28
LIMCH1Q9UPQ0 RNU6-294P-201ENST00000364999 102 ntBASIC0.79□□□□□ -2.28
LIMCH1Q9UPQ0 MIR140-201ENST00000385282 100 ntBASIC0.79□□□□□ -2.28
LIMCH1Q9UPQ0 RNU6-524P-201ENST00000384270 107 ntBASIC0.78□□□□□ -2.28
LIMCH1Q9UPQ0 SNORD116-22-201ENST00000384430 92 ntBASIC0.78□□□□□ -2.28
LIMCH1Q9UPQ0 Y_RNA.609-201ENST00000410669 89 ntBASIC0.78□□□□□ -2.28
LIMCH1Q9UPQ0 AC006254.2-201ENST00000603259 279 ntBASIC0.78□□□□□ -2.28
LIMCH1Q9UPQ0 MIR6835-201ENST00000621552 64 ntBASIC0.78□□□□□ -2.28
LIMCH1Q9UPQ0 SNORD18A-201ENST00000363753 72 ntBASIC0.77□□□□□ -2.29
LIMCH1Q9UPQ0 SNORD28-201ENST00000384706 75 ntBASIC0.77□□□□□ -2.29
LIMCH1Q9UPQ0 MIR193B-201ENST00000384907 83 ntBASIC0.77□□□□□ -2.29
LIMCH1Q9UPQ0 RNU6-519P-201ENST00000410590 108 ntBASIC0.77□□□□□ -2.29
LIMCH1Q9UPQ0 AL161932.1-201ENST00000437408 146 ntBASIC0.77□□□□□ -2.29
LIMCH1Q9UPQ0 SNORD4B-201ENST00000459083 72 ntBASIC0.77□□□□□ -2.29
LIMCH1Q9UPQ0 snoU13.11-201ENST00000459219 104 ntBASIC0.77□□□□□ -2.29
LIMCH1Q9UPQ0 MIR4536-1-201ENST00000583537 88 ntBASIC0.77□□□□□ -2.29
LIMCH1Q9UPQ0 AL590095.2-201ENST00000604136 117 ntBASIC0.77□□□□□ -2.29
LIMCH1Q9UPQ0 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.77□□□□□ -2.29
LIMCH1Q9UPQ0 SNORD115-24-201ENST00000363528 82 ntBASIC0.76□□□□□ -2.29
LIMCH1Q9UPQ0 RNA5SP457-201ENST00000363657 124 ntBASIC0.76□□□□□ -2.29
LIMCH1Q9UPQ0 Y_RNA.221-201ENST00000364248 96 ntBASIC0.76□□□□□ -2.29
LIMCH1Q9UPQ0 RNU6-466P-201ENST00000391224 103 ntBASIC0.76□□□□□ -2.29
LIMCH1Q9UPQ0 CYP3A137P-201ENST00000562436 69 ntBASIC0.76□□□□□ -2.29
LIMCH1Q9UPQ0 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.76□□□□□ -2.29
LIMCH1Q9UPQ0 RNU6-957P-201ENST00000363652 99 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 384.8 ms