Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 MIR516A2-201ENST00000384888 90 ntBASIC0.6□□□□□ -2.31
HIPK3Q9H422 MIR516A1-201ENST00000385033 90 ntBASIC0.6□□□□□ -2.31
HIPK3Q9H422 RNY4P18-201ENST00000391107 89 ntBASIC0.6□□□□□ -2.31
HIPK3Q9H422 MIR1302-5-201ENST00000408164 150 ntBASIC0.6□□□□□ -2.31
HIPK3Q9H422 RNU7-195P-201ENST00000458793 62 ntBASIC0.6□□□□□ -2.31
HIPK3Q9H422 Y_RNA.659-201ENST00000515994 113 ntBASIC0.6□□□□□ -2.31
HIPK3Q9H422 RNA5SP121-201ENST00000516537 101 ntBASIC0.6□□□□□ -2.31
HIPK3Q9H422 Y_RNA.10-201ENST00000362371 110 ntBASIC0.59□□□□□ -2.31
HIPK3Q9H422 Y_RNA.78-201ENST00000362970 110 ntBASIC0.59□□□□□ -2.31
HIPK3Q9H422 SNORD115-24-201ENST00000363528 82 ntBASIC0.59□□□□□ -2.31
HIPK3Q9H422 RNU6-1229P-201ENST00000364295 107 ntBASIC0.59□□□□□ -2.31
HIPK3Q9H422 RNU6-215P-201ENST00000365169 102 ntBASIC0.59□□□□□ -2.31
HIPK3Q9H422 SNORD20-201ENST00000384550 80 ntBASIC0.59□□□□□ -2.31
HIPK3Q9H422 MIR599-201ENST00000385069 95 ntBASIC0.59□□□□□ -2.31
HIPK3Q9H422 RNU6-554P-201ENST00000410466 106 ntBASIC0.59□□□□□ -2.31
HIPK3Q9H422 RNA5SP47-201ENST00000517230 109 ntBASIC0.59□□□□□ -2.31
HIPK3Q9H422 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.59□□□□□ -2.31
HIPK3Q9H422 Y_RNA.57-201ENST00000362806 113 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 SNORA36.1-201ENST00000363424 132 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 SNORD45B-201ENST00000364617 72 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 RNA5SP517-201ENST00000364724 117 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 Y_RNA.601-201ENST00000410500 113 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 SNORA19.1-201ENST00000410656 129 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 AC109327.2-201ENST00000448339 378 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 Y_RNA.809-201ENST00000516058 95 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 RNU6-904P-201ENST00000516206 101 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 uc_338.28-201ENST00000612082 187 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 AC092634.7-201ENST00000621022 103 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 AC244669.1-204ENST00000621564 178 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.58□□□□□ -2.32
HIPK3Q9H422 RNU6-1260P-201ENST00000362944 107 ntBASIC0.57□□□□□ -2.32
HIPK3Q9H422 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
HIPK3Q9H422 RNU4-54P-201ENST00000516428 129 ntBASIC0.57□□□□□ -2.32
HIPK3Q9H422 SCARNA16.5-201ENST00000517114 183 ntBASIC0.57□□□□□ -2.32
HIPK3Q9H422 AC018659.1-201ENST00000551083 169 ntBASIC0.57□□□□□ -2.32
HIPK3Q9H422 MIR4439-201ENST00000583746 80 ntBASIC0.57□□□□□ -2.32
HIPK3Q9H422 AC243829.6-201ENST00000612652 106 ntBASIC0.57□□□□□ -2.32
HIPK3Q9H422 MIR6828-201ENST00000636181 60 ntBASIC0.57□□□□□ -2.32
HIPK3Q9H422 AC091304.10-201ENST00000641554 121 ntBASIC0.57□□□□□ -2.32
HIPK3Q9H422 RNU6-945P-201ENST00000383947 107 ntBASIC0.56□□□□□ -2.32
HIPK3Q9H422 RNU6-1254P-201ENST00000391266 104 ntBASIC0.56□□□□□ -2.32
HIPK3Q9H422 RNU6-919P-201ENST00000516731 104 ntBASIC0.56□□□□□ -2.32
HIPK3Q9H422 RNU6-86P-201ENST00000606534 107 ntBASIC0.56□□□□□ -2.32
HIPK3Q9H422 uc_338.17-201ENST00000619633 179 ntBASIC0.56□□□□□ -2.32
HIPK3Q9H422 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
HIPK3Q9H422 Y_RNA.95-201ENST00000363079 95 ntBASIC0.55□□□□□ -2.32
HIPK3Q9H422 RNU6-1125P-201ENST00000363601 107 ntBASIC0.55□□□□□ -2.32
HIPK3Q9H422 RNU6-1244P-201ENST00000363614 108 ntBASIC0.55□□□□□ -2.32
HIPK3Q9H422 Y_RNA.221-201ENST00000364248 96 ntBASIC0.55□□□□□ -2.32
HIPK3Q9H422 SNORA51.5-201ENST00000384126 131 ntBASIC0.55□□□□□ -2.32
HIPK3Q9H422 RNU6-480P-201ENST00000384332 107 ntBASIC0.55□□□□□ -2.32
HIPK3Q9H422 SNORA8.2-201ENST00000384372 139 ntBASIC0.55□□□□□ -2.32
HIPK3Q9H422 AC114737.2-201ENST00000421583 173 ntBASIC0.55□□□□□ -2.32
HIPK3Q9H422 RNU7-161P-201ENST00000517289 62 ntBASIC0.55□□□□□ -2.32
HIPK3Q9H422 SNORD36A-201ENST00000362874 73 ntBASIC0.54□□□□□ -2.32
HIPK3Q9H422 RNA5SP403-201ENST00000363598 108 ntBASIC0.54□□□□□ -2.32
HIPK3Q9H422 VTRNA1-3-201ENST00000365645 89 ntBASIC0.54□□□□□ -2.32
HIPK3Q9H422 RNU6-1113P-201ENST00000384348 107 ntBASIC0.54□□□□□ -2.32
HIPK3Q9H422 MIR590-201ENST00000385008 97 ntBASIC0.54□□□□□ -2.32
HIPK3Q9H422 SCARNA23-201ENST00000516060 130 ntBASIC0.54□□□□□ -2.32
HIPK3Q9H422 RNA5SP268-201ENST00000516828 124 ntBASIC0.54□□□□□ -2.32
HIPK3Q9H422 RNU6-537P-201ENST00000517277 103 ntBASIC0.54□□□□□ -2.32
HIPK3Q9H422 AC012531.4-201ENST00000616509 177 ntBASIC0.54□□□□□ -2.32
HIPK3Q9H422 RNU6-755P-201ENST00000364400 103 ntBASIC0.53□□□□□ -2.32
HIPK3Q9H422 RNU6-756P-201ENST00000383997 107 ntBASIC0.53□□□□□ -2.32
HIPK3Q9H422 RNU6-524P-201ENST00000384270 107 ntBASIC0.53□□□□□ -2.32
HIPK3Q9H422 MIR181B2-201ENST00000385004 89 ntBASIC0.53□□□□□ -2.32
HIPK3Q9H422 RNU6-243P-201ENST00000391140 107 ntBASIC0.53□□□□□ -2.32
HIPK3Q9H422 SNORA40.8-201ENST00000411034 126 ntBASIC0.53□□□□□ -2.32
HIPK3Q9H422 RN7SKP12-201ENST00000516275 143 ntBASIC0.53□□□□□ -2.32
HIPK3Q9H422 RNU6-795P-201ENST00000516323 103 ntBASIC0.53□□□□□ -2.32
HIPK3Q9H422 MIR4777-201ENST00000583710 86 ntBASIC0.53□□□□□ -2.32
HIPK3Q9H422 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.53□□□□□ -2.33
HIPK3Q9H422 RNA5SP62-201ENST00000363457 110 ntBASIC0.52□□□□□ -2.33
HIPK3Q9H422 MIR518A1-201ENST00000385068 85 ntBASIC0.52□□□□□ -2.33
HIPK3Q9H422 AL035461.1-201ENST00000421490 332 ntBASIC0.52□□□□□ -2.33
HIPK3Q9H422 AL157398.1-201ENST00000452981 186 ntBASIC0.52□□□□□ -2.33
HIPK3Q9H422 RNA5SP227-201ENST00000516184 113 ntBASIC0.52□□□□□ -2.33
HIPK3Q9H422 MIR548Z-201ENST00000584743 97 ntBASIC0.52□□□□□ -2.33
HIPK3Q9H422 SNORA25.18-201ENST00000607153 114 ntBASIC0.52□□□□□ -2.33
HIPK3Q9H422 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.52□□□□□ -2.33
HIPK3Q9H422 RNU6-766P-201ENST00000362478 107 ntBASIC0.51□□□□□ -2.33
HIPK3Q9H422 SNORD118-201ENST00000363593 134 ntBASIC0.51□□□□□ -2.33
HIPK3Q9H422 Y_RNA.467-201ENST00000384297 102 ntBASIC0.51□□□□□ -2.33
HIPK3Q9H422 AL031737.1-201ENST00000450125 223 ntBASIC0.51□□□□□ -2.33
HIPK3Q9H422 RNU7-104P-201ENST00000459398 79 ntBASIC0.51□□□□□ -2.33
HIPK3Q9H422 MIR7107-201ENST00000611489 80 ntBASIC0.51□□□□□ -2.33
HIPK3Q9H422 MIR2909-201ENST00000617113 69 ntBASIC0.51□□□□□ -2.33
HIPK3Q9H422 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.51□□□□□ -2.33
HIPK3Q9H422 RNU6-726P-201ENST00000364680 107 ntBASIC0.5□□□□□ -2.33
HIPK3Q9H422 RNU6-813P-201ENST00000384691 107 ntBASIC0.5□□□□□ -2.33
HIPK3Q9H422 SNORD71-201ENST00000411292 86 ntBASIC0.5□□□□□ -2.33
HIPK3Q9H422 AC067863.3-201ENST00000624172 122 ntBASIC0.5□□□□□ -2.33
HIPK3Q9H422 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.5□□□□□ -2.33
HIPK3Q9H422 SNORA63.4-201ENST00000362763 126 ntBASIC0.49□□□□□ -2.33
HIPK3Q9H422 Y_RNA.433-201ENST00000384089 102 ntBASIC0.49□□□□□ -2.33
HIPK3Q9H422 RNU6-1265P-201ENST00000516342 103 ntBASIC0.49□□□□□ -2.33
HIPK3Q9H422 RNU6-109P-201ENST00000516364 107 ntBASIC0.49□□□□□ -2.33
HIPK3Q9H422 RNU6-184P-201ENST00000516514 107 ntBASIC0.49□□□□□ -2.33
HIPK3Q9H422 MIR4514-201ENST00000581410 57 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 165.1 ms