Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SNORD114-26-201ENST00000363543 72 ntBASIC0.72□□□□□ -2.29
MMP28Q9H239 SNORD58A-201ENST00000383875 65 ntBASIC0.72□□□□□ -2.29
MMP28Q9H239 RNU6-49P-201ENST00000384256 107 ntBASIC0.72□□□□□ -2.29
MMP28Q9H239 ACA64.5-201ENST00000516207 127 ntBASIC0.72□□□□□ -2.29
MMP28Q9H239 RNA5SP170-201ENST00000517150 101 ntBASIC0.72□□□□□ -2.29
MMP28Q9H239 CYP3A137P-201ENST00000562436 69 ntBASIC0.72□□□□□ -2.29
MMP28Q9H239 AC011195.1-201ENST00000578177 177 ntBASIC0.72□□□□□ -2.29
MMP28Q9H239 MIR3612-201ENST00000579753 87 ntBASIC0.72□□□□□ -2.29
MMP28Q9H239 AC025627.3-201ENST00000582078 182 ntBASIC0.72□□□□□ -2.29
MMP28Q9H239 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.72□□□□□ -2.29
MMP28Q9H239 Y_RNA.36-201ENST00000362602 112 ntBASIC0.71□□□□□ -2.3
MMP28Q9H239 SNORD36A-201ENST00000362874 73 ntBASIC0.71□□□□□ -2.3
MMP28Q9H239 Y_RNA.96-201ENST00000363092 109 ntBASIC0.71□□□□□ -2.3
MMP28Q9H239 Y_RNA.190-201ENST00000363964 101 ntBASIC0.71□□□□□ -2.3
MMP28Q9H239 MIR644A-201ENST00000385262 94 ntBASIC0.71□□□□□ -2.3
MMP28Q9H239 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.71□□□□□ -2.3
MMP28Q9H239 AC244098.3-201ENST00000424803 96 ntBASIC0.71□□□□□ -2.3
MMP28Q9H239 RNU6-351P-201ENST00000516097 100 ntBASIC0.71□□□□□ -2.3
MMP28Q9H239 Y_RNA.694-201ENST00000516677 117 ntBASIC0.71□□□□□ -2.3
MMP28Q9H239 MIR4653-201ENST00000585107 83 ntBASIC0.71□□□□□ -2.3
MMP28Q9H239 RNU7-10P-201ENST00000607194 63 ntBASIC0.71□□□□□ -2.3
MMP28Q9H239 RNA5SP117-201ENST00000365294 118 ntBASIC0.7□□□□□ -2.3
MMP28Q9H239 MIR599-201ENST00000385069 95 ntBASIC0.7□□□□□ -2.3
MMP28Q9H239 RNU6-1254P-201ENST00000391266 104 ntBASIC0.7□□□□□ -2.3
MMP28Q9H239 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.7□□□□□ -2.3
MMP28Q9H239 snoU13.11-201ENST00000459219 104 ntBASIC0.7□□□□□ -2.3
MMP28Q9H239 PSMC1P5-201ENST00000512850 177 ntBASIC0.7□□□□□ -2.3
MMP28Q9H239 Y_RNA.809-201ENST00000516058 95 ntBASIC0.7□□□□□ -2.3
MMP28Q9H239 AC138907.6-201ENST00000568401 126 ntBASIC0.7□□□□□ -2.3
MMP28Q9H239 AC138869.1-201ENST00000568623 124 ntBASIC0.7□□□□□ -2.3
MMP28Q9H239 MIR5582-201ENST00000579697 68 ntBASIC0.7□□□□□ -2.3
MMP28Q9H239 AL353765.1-201ENST00000605514 183 ntBASIC0.7□□□□□ -2.3
MMP28Q9H239 MIR6779-201ENST00000617283 64 ntBASIC0.7□□□□□ -2.3
MMP28Q9H239 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.7□□□□□ -2.3
MMP28Q9H239 Y_RNA.174-201ENST00000363781 105 ntBASIC0.69□□□□□ -2.3
MMP28Q9H239 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
MMP28Q9H239 MIR519A1-201ENST00000385257 85 ntBASIC0.69□□□□□ -2.3
MMP28Q9H239 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
MMP28Q9H239 RNU6-243P-201ENST00000391140 107 ntBASIC0.69□□□□□ -2.3
MMP28Q9H239 AC097635.1-201ENST00000450678 155 ntBASIC0.69□□□□□ -2.3
MMP28Q9H239 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.69□□□□□ -2.3
MMP28Q9H239 SNORD116-10-201ENST00000363791 102 ntBASIC0.68□□□□□ -2.3
MMP28Q9H239 Y_RNA.220-201ENST00000364244 109 ntBASIC0.68□□□□□ -2.3
MMP28Q9H239 Y_RNA.221-201ENST00000364248 96 ntBASIC0.68□□□□□ -2.3
MMP28Q9H239 AL606490.4-201ENST00000423117 127 ntBASIC0.68□□□□□ -2.3
MMP28Q9H239 AL161932.1-201ENST00000437408 146 ntBASIC0.68□□□□□ -2.3
MMP28Q9H239 AC244505.6-201ENST00000452829 130 ntBASIC0.68□□□□□ -2.3
MMP28Q9H239 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.68□□□□□ -2.3
MMP28Q9H239 RNU6-1260P-201ENST00000362944 107 ntBASIC0.67□□□□□ -2.3
MMP28Q9H239 RNU6-524P-201ENST00000384270 107 ntBASIC0.67□□□□□ -2.3
MMP28Q9H239 MIR608-201ENST00000384820 100 ntBASIC0.67□□□□□ -2.3
MMP28Q9H239 RNA5SP222-201ENST00000411039 105 ntBASIC0.67□□□□□ -2.3
MMP28Q9H239 MIR3678-201ENST00000578455 94 ntBASIC0.67□□□□□ -2.3
MMP28Q9H239 MIR18A-201ENST00000362310 71 ntBASIC0.66□□□□□ -2.3
MMP28Q9H239 SNORD115-24-201ENST00000363528 82 ntBASIC0.66□□□□□ -2.3
MMP28Q9H239 RNU6-957P-201ENST00000363652 99 ntBASIC0.66□□□□□ -2.3
MMP28Q9H239 RNY1P8-201ENST00000383970 114 ntBASIC0.66□□□□□ -2.3
MMP28Q9H239 RNU7-85P-201ENST00000458851 63 ntBASIC0.66□□□□□ -2.3
MMP28Q9H239 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.66□□□□□ -2.3
MMP28Q9H239 RNU6-1255P-201ENST00000363434 112 ntBASIC0.65□□□□□ -2.31
MMP28Q9H239 Y_RNA.609-201ENST00000410669 89 ntBASIC0.65□□□□□ -2.31
MMP28Q9H239 Y_RNA.648-201ENST00000459455 110 ntBASIC0.65□□□□□ -2.31
MMP28Q9H239 RNU6-469P-201ENST00000516253 101 ntBASIC0.65□□□□□ -2.31
MMP28Q9H239 RNU6-844P-201ENST00000517175 102 ntBASIC0.65□□□□□ -2.31
MMP28Q9H239 AC026421.1-201ENST00000519101 163 ntBASIC0.65□□□□□ -2.31
MMP28Q9H239 MIR4714-201ENST00000580728 77 ntBASIC0.65□□□□□ -2.31
MMP28Q9H239 Y_RNA.43-201ENST00000362670 111 ntBASIC0.64□□□□□ -2.31
MMP28Q9H239 SNORD18A-201ENST00000363753 72 ntBASIC0.64□□□□□ -2.31
MMP28Q9H239 Y_RNA.283-201ENST00000364798 112 ntBASIC0.64□□□□□ -2.31
MMP28Q9H239 TRDV1-202ENST00000621643 102 ntBASIC0.64□□□□□ -2.31
MMP28Q9H239 MIR6866-201ENST00000638146 69 ntBASIC0.64□□□□□ -2.31
MMP28Q9H239 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.63□□□□□ -2.31
MMP28Q9H239 RNA5SP325-201ENST00000363756 130 ntBASIC0.63□□□□□ -2.31
MMP28Q9H239 Y_RNA.205-201ENST00000364128 113 ntBASIC0.63□□□□□ -2.31
MMP28Q9H239 Y_RNA.369-201ENST00000365568 117 ntBASIC0.63□□□□□ -2.31
MMP28Q9H239 RNY1P4-201ENST00000384595 115 ntBASIC0.63□□□□□ -2.31
MMP28Q9H239 MIR216A-201ENST00000385063 110 ntBASIC0.63□□□□□ -2.31
MMP28Q9H239 RNU6-466P-201ENST00000391224 103 ntBASIC0.63□□□□□ -2.31
MMP28Q9H239 RNU6-519P-201ENST00000410590 108 ntBASIC0.63□□□□□ -2.31
MMP28Q9H239 RNU6-75P-201ENST00000515944 104 ntBASIC0.63□□□□□ -2.31
MMP28Q9H239 RNU7-161P-201ENST00000517289 62 ntBASIC0.63□□□□□ -2.31
MMP28Q9H239 RN7SL793P-201ENST00000583259 296 ntBASIC0.63□□□□□ -2.31
MMP28Q9H239 U6.100-201ENST00000636230 99 ntBASIC0.63□□□□□ -2.31
MMP28Q9H239 RNA5SP403-201ENST00000363598 108 ntBASIC0.62□□□□□ -2.31
MMP28Q9H239 RNU6-294P-201ENST00000364999 102 ntBASIC0.62□□□□□ -2.31
MMP28Q9H239 RNU6-1134P-201ENST00000365156 101 ntBASIC0.62□□□□□ -2.31
MMP28Q9H239 SNORA36.2-201ENST00000384004 127 ntBASIC0.62□□□□□ -2.31
MMP28Q9H239 SNORD28-201ENST00000384706 75 ntBASIC0.62□□□□□ -2.31
MMP28Q9H239 SNORD4B-201ENST00000459083 72 ntBASIC0.62□□□□□ -2.31
MMP28Q9H239 RNU7-104P-201ENST00000459398 79 ntBASIC0.62□□□□□ -2.31
MMP28Q9H239 RNU6-1265P-201ENST00000516342 103 ntBASIC0.62□□□□□ -2.31
MMP28Q9H239 AC244669.1-204ENST00000621564 178 ntBASIC0.62□□□□□ -2.31
MMP28Q9H239 RNU6-1229P-201ENST00000364295 107 ntBASIC0.61□□□□□ -2.31
MMP28Q9H239 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.61□□□□□ -2.31
MMP28Q9H239 MIR4639-201ENST00000584938 69 ntBASIC0.61□□□□□ -2.31
MMP28Q9H239 MIR6835-201ENST00000621552 64 ntBASIC0.61□□□□□ -2.31
MMP28Q9H239 RNU6-402P-201ENST00000410678 103 ntBASIC0.6□□□□□ -2.31
MMP28Q9H239 RNU6-65P-201ENST00000516332 98 ntBASIC0.6□□□□□ -2.31
MMP28Q9H239 RNU6-267P-201ENST00000516714 103 ntBASIC0.6□□□□□ -2.31
MMP28Q9H239 RNU6-135P-201ENST00000516769 101 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 228.7 ms