Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 MIR3163-201ENST00000581592 73 ntBASIC-0.25□□□□□ -2.45
ZNF560Q96MR9 AC069503.3-201ENST00000618674 145 ntBASIC-0.25□□□□□ -2.45
ZNF560Q96MR9 RNU6-1313P-201ENST00000362622 102 ntBASIC-0.26□□□□□ -2.45
ZNF560Q96MR9 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.26□□□□□ -2.45
ZNF560Q96MR9 SNORD114-11-201ENST00000363738 75 ntBASIC-0.26□□□□□ -2.45
ZNF560Q96MR9 Y_RNA.398-201ENST00000383952 99 ntBASIC-0.26□□□□□ -2.45
ZNF560Q96MR9 Y_RNA.785-201ENST00000384290 109 ntBASIC-0.26□□□□□ -2.45
ZNF560Q96MR9 MIR548D2-201ENST00000384955 97 ntBASIC-0.26□□□□□ -2.45
ZNF560Q96MR9 MIR759-201ENST00000390224 91 ntBASIC-0.26□□□□□ -2.45
ZNF560Q96MR9 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.26□□□□□ -2.45
ZNF560Q96MR9 Y_RNA.662-201ENST00000516028 97 ntBASIC-0.26□□□□□ -2.45
ZNF560Q96MR9 RNU6-1271P-201ENST00000517049 105 ntBASIC-0.26□□□□□ -2.45
ZNF560Q96MR9 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 SNORA18.1-201ENST00000363418 128 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 Y_RNA.198-201ENST00000364013 98 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 RNU6-46P-201ENST00000383860 107 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 Y_RNA.489-201ENST00000384410 101 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 MIR181B2-201ENST00000385004 89 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 MIR569-201ENST00000385228 96 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 MT-TY-201ENST00000387409 66 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 RNU6-394P-201ENST00000410735 107 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 MIR4460-201ENST00000577862 86 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 AL590491.3-201ENST00000610731 82 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 AC004792.1-201ENST00000614523 137 ntBASIC-0.27□□□□□ -2.45
ZNF560Q96MR9 Y_RNA.8-201ENST00000362353 102 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 RNU6-235P-201ENST00000362644 107 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 Y_RNA.173-201ENST00000363776 113 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 Y_RNA.188-201ENST00000363952 111 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 RNU6-154P-201ENST00000384306 106 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 SNORA49-201ENST00000386157 136 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 MIR548G-201ENST00000408442 89 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 SPINT5P-201ENST00000448174 155 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 snoU13.11-201ENST00000459219 104 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 RNA5SP285-201ENST00000516619 119 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.28□□□□□ -2.45
ZNF560Q96MR9 SNORD115-44-201ENST00000365391 82 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.528-201ENST00000384575 108 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.580-201ENST00000391004 95 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 RNA5SP300-201ENST00000391197 107 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 AL158147.1-201ENST00000443970 75 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 AC097510.1-201ENST00000510945 133 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 AP001328.1-201ENST00000528550 176 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 AC007012.1-201ENST00000567192 175 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 AL353621.2-201ENST00000605340 133 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 AC145423.2-201ENST00000610631 239 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 MIR6759-201ENST00000638110 65 ntBASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.29□□□□□ -2.46
ZNF560Q96MR9 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.29-201ENST00000362570 113 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 RNU6-363P-201ENST00000362895 105 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.213-201ENST00000364178 111 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 MIR214-201ENST00000385214 110 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 RNU6-243P-201ENST00000391140 107 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 RNU7-74P-201ENST00000459104 62 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 RNU6-426P-201ENST00000516464 97 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 MIR3144-201ENST00000579460 79 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 MIR3666-201ENST00000607845 111 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 AL035470.1-201ENST00000622571 220 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 MIR4788-201ENST00000639104 80 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 AL512310.12-203ENST00000640543 90 ntBASIC-0.3□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.150-201ENST00000363562 102 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 SNORD38.1-201ENST00000363863 68 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 RNU6-647P-201ENST00000364243 107 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 SNORD58C-201ENST00000365223 64 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 MIR582-201ENST00000365731 98 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 MIR652-201ENST00000385278 98 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 RNU6-75P-201ENST00000515944 104 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 MIR548X2-201ENST00000579776 100 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 MIR4696-201ENST00000581431 70 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 uc_338.10-201ENST00000621872 182 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 AP001340.1-201ENST00000624405 217 ntBASIC-0.31□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.155-201ENST00000363632 101 ntBASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 RNU6-54P-201ENST00000365563 107 ntBASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 SNORD38.2-201ENST00000384470 69 ntBASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 MIR9-2-201ENST00000384838 87 ntBASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 MIR513C-201ENST00000401352 84 ntBASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 MIR3613-201ENST00000579844 87 ntBASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 RNU6-90P-201ENST00000606352 106 ntBASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 AL162726.3-218ENST00000636401 95 ntBASIC-0.32□□□□□ -2.46
ZNF560Q96MR9 RNA5SP98-201ENST00000363158 137 ntBASIC-0.33□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 197.5 ms