Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNU6-295P-201ENST00000516901 104 ntBASIC2.21□□□□□ -2.06
NPAS3Q8IXF0 U1.36-201ENST00000620684 176 ntBASIC2.21□□□□□ -2.06
NPAS3Q8IXF0 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.2□□□□□ -2.06
NPAS3Q8IXF0 RNA5SP264-201ENST00000363115 107 ntBASIC2.2□□□□□ -2.06
NPAS3Q8IXF0 RNU6-930P-201ENST00000390938 100 ntBASIC2.2□□□□□ -2.06
NPAS3Q8IXF0 SNORA48.3-201ENST00000391081 134 ntBASIC2.2□□□□□ -2.06
NPAS3Q8IXF0 MIR4771-2-201ENST00000577758 74 ntBASIC2.2□□□□□ -2.06
NPAS3Q8IXF0 MIR4771-1-201ENST00000582617 74 ntBASIC2.2□□□□□ -2.06
NPAS3Q8IXF0 SNRPGP19-201ENST00000603826 189 ntBASIC2.2□□□□□ -2.06
NPAS3Q8IXF0 GHRLOS.1-201ENST00000610995 70 ntBASIC2.2□□□□□ -2.06
NPAS3Q8IXF0 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.2□□□□□ -2.06
NPAS3Q8IXF0 MIR7-2-201ENST00000384970 110 ntBASIC2.19□□□□□ -2.06
NPAS3Q8IXF0 SNORA26.9-201ENST00000391322 122 ntBASIC2.19□□□□□ -2.06
NPAS3Q8IXF0 AL157398.1-201ENST00000452981 186 ntBASIC2.19□□□□□ -2.06
NPAS3Q8IXF0 AL133373.1-201ENST00000497098 94 ntBASIC2.19□□□□□ -2.06
NPAS3Q8IXF0 RNA5SP458-201ENST00000516188 119 ntBASIC2.19□□□□□ -2.06
NPAS3Q8IXF0 RNU6-980P-201ENST00000516925 103 ntBASIC2.19□□□□□ -2.06
NPAS3Q8IXF0 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.18□□□□□ -2.06
NPAS3Q8IXF0 MIRLET7G-201ENST00000362280 84 ntBASIC2.18□□□□□ -2.06
NPAS3Q8IXF0 RNU6-934P-201ENST00000365154 107 ntBASIC2.18□□□□□ -2.06
NPAS3Q8IXF0 RNU6-520P-201ENST00000384717 104 ntBASIC2.18□□□□□ -2.06
NPAS3Q8IXF0 MIR125B2-201ENST00000385128 89 ntBASIC2.18□□□□□ -2.06
NPAS3Q8IXF0 SNORA40.17-201ENST00000517256 115 ntBASIC2.18□□□□□ -2.06
NPAS3Q8IXF0 AP003716.2-201ENST00000528260 108 ntBASIC2.18□□□□□ -2.06
NPAS3Q8IXF0 AC008608.1-201ENST00000603910 127 ntBASIC2.18□□□□□ -2.06
NPAS3Q8IXF0 AL645939.4-201ENST00000604495 135 ntBASIC2.18□□□□□ -2.06
NPAS3Q8IXF0 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
NPAS3Q8IXF0 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
NPAS3Q8IXF0 SNORA2.1-201ENST00000363089 137 ntBASIC2.17□□□□□ -2.06
NPAS3Q8IXF0 RNU6-1126P-201ENST00000384002 107 ntBASIC2.17□□□□□ -2.06
NPAS3Q8IXF0 RNU6-439P-201ENST00000384188 106 ntBASIC2.17□□□□□ -2.06
NPAS3Q8IXF0 MIR6845-201ENST00000613182 61 ntBASIC2.17□□□□□ -2.06
NPAS3Q8IXF0 MIR6895-201ENST00000613497 78 ntBASIC2.17□□□□□ -2.06
NPAS3Q8IXF0 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.17□□□□□ -2.06
NPAS3Q8IXF0 RNU6V-201ENST00000384105 107 ntBASIC2.16□□□□□ -2.06
NPAS3Q8IXF0 snoU13.13-201ENST00000458842 104 ntBASIC2.16□□□□□ -2.06
NPAS3Q8IXF0 MIR4658-201ENST00000584344 65 ntBASIC2.16□□□□□ -2.06
NPAS3Q8IXF0 MIR548O2-201ENST00000616090 70 ntBASIC2.16□□□□□ -2.06
NPAS3Q8IXF0 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
NPAS3Q8IXF0 SNORD113-2-201ENST00000391082 72 ntBASIC2.15□□□□□ -2.07
NPAS3Q8IXF0 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.15□□□□□ -2.07
NPAS3Q8IXF0 Y_RNA.783-201ENST00000613546 102 ntBASIC2.15□□□□□ -2.07
NPAS3Q8IXF0 MIR6739-201ENST00000622461 75 ntBASIC2.15□□□□□ -2.07
NPAS3Q8IXF0 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.14□□□□□ -2.07
NPAS3Q8IXF0 Y_RNA.330-201ENST00000365230 109 ntBASIC2.14□□□□□ -2.07
NPAS3Q8IXF0 RNA5SP270-201ENST00000411361 118 ntBASIC2.14□□□□□ -2.07
NPAS3Q8IXF0 AC244505.6-201ENST00000452829 130 ntBASIC2.14□□□□□ -2.07
NPAS3Q8IXF0 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
NPAS3Q8IXF0 SNORD115-24-201ENST00000363528 82 ntBASIC2.13□□□□□ -2.07
NPAS3Q8IXF0 RNU4-33P-201ENST00000364316 85 ntBASIC2.13□□□□□ -2.07
NPAS3Q8IXF0 RNU6-364P-201ENST00000384387 107 ntBASIC2.13□□□□□ -2.07
NPAS3Q8IXF0 MIR517B-201ENST00000385102 67 ntBASIC2.13□□□□□ -2.07
NPAS3Q8IXF0 AL161935.2-201ENST00000414627 60 ntBASIC2.13□□□□□ -2.07
NPAS3Q8IXF0 AC067940.1-201ENST00000458411 300 ntBASIC2.13□□□□□ -2.07
NPAS3Q8IXF0 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
NPAS3Q8IXF0 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.12□□□□□ -2.07
NPAS3Q8IXF0 Y_RNA.338-201ENST00000365320 114 ntBASIC2.12□□□□□ -2.07
NPAS3Q8IXF0 MIR583-201ENST00000384846 75 ntBASIC2.12□□□□□ -2.07
NPAS3Q8IXF0 MIR216B-201ENST00000390186 82 ntBASIC2.12□□□□□ -2.07
NPAS3Q8IXF0 RNA5SP450-201ENST00000411206 102 ntBASIC2.12□□□□□ -2.07
NPAS3Q8IXF0 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
NPAS3Q8IXF0 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.11□□□□□ -2.07
NPAS3Q8IXF0 RNU1-52P-201ENST00000384190 164 ntBASIC2.11□□□□□ -2.07
NPAS3Q8IXF0 MIR519E-201ENST00000385075 84 ntBASIC2.11□□□□□ -2.07
NPAS3Q8IXF0 JTBP1-201ENST00000441314 247 ntBASIC2.11□□□□□ -2.07
NPAS3Q8IXF0 RNU7-104P-201ENST00000459398 79 ntBASIC2.11□□□□□ -2.07
NPAS3Q8IXF0 AC104435.1-201ENST00000483483 166 ntBASIC2.11□□□□□ -2.07
NPAS3Q8IXF0 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.11□□□□□ -2.07
NPAS3Q8IXF0 U4.4-201ENST00000620626 117 ntBASIC2.11□□□□□ -2.07
NPAS3Q8IXF0 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
NPAS3Q8IXF0 RNU1-17P-201ENST00000363022 152 ntBASIC2.1□□□□□ -2.07
NPAS3Q8IXF0 RNU6-1162P-201ENST00000384443 104 ntBASIC2.1□□□□□ -2.07
NPAS3Q8IXF0 MIR617-201ENST00000385030 97 ntBASIC2.1□□□□□ -2.07
NPAS3Q8IXF0 MIR545-201ENST00000385085 106 ntBASIC2.1□□□□□ -2.07
NPAS3Q8IXF0 MIR524-201ENST00000385242 87 ntBASIC2.1□□□□□ -2.07
NPAS3Q8IXF0 SNORD116.2-201ENST00000391251 93 ntBASIC2.1□□□□□ -2.07
NPAS3Q8IXF0 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.1□□□□□ -2.07
NPAS3Q8IXF0 MIR5694-201ENST00000581190 76 ntBASIC2.1□□□□□ -2.07
NPAS3Q8IXF0 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
NPAS3Q8IXF0 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
NPAS3Q8IXF0 SNORA6-201ENST00000384033 151 ntBASIC2.09□□□□□ -2.07
NPAS3Q8IXF0 RNU7-102P-201ENST00000458948 62 ntBASIC2.09□□□□□ -2.07
NPAS3Q8IXF0 MIR4676-201ENST00000583078 72 ntBASIC2.09□□□□□ -2.07
NPAS3Q8IXF0 AC245884.12-201ENST00000615364 59 ntBASIC2.09□□□□□ -2.07
NPAS3Q8IXF0 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
NPAS3Q8IXF0 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.09□□□□□ -2.08
NPAS3Q8IXF0 RNU6-698P-201ENST00000363523 107 ntBASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 Y_RNA.226-201ENST00000364337 114 ntBASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 RNU6-34P-201ENST00000364874 107 ntBASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 SNORA41B-201ENST00000384785 128 ntBASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 MIR548F3-201ENST00000408509 87 ntBASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 RNU7-119P-201ENST00000459279 63 ntBASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 RNA5SP182-201ENST00000516064 82 ntBASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 RNU7-174P-201ENST00000516248 59 ntBASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 RNU6-250P-201ENST00000516958 103 ntBASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 RNU7-161P-201ENST00000517289 62 ntBASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 AC018659.1-201ENST00000551083 169 ntBASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
NPAS3Q8IXF0 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 208.8 ms